data_7DB # _chem_comp.id 7DB _chem_comp.name ;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{S})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H46 N6 O15" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-10-10 _chem_comp.pdbx_modified_date 2017-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 754.739 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7DB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LZI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7DB C4 C1 C 0 1 N N R 100.633 92.801 9.648 9.778 1.833 1.268 C4 7DB 1 7DB C5 C2 C 0 1 N N R 99.349 93.052 8.942 8.928 0.561 1.305 C5 7DB 2 7DB C6 C3 C 0 1 N N N 98.115 92.652 9.773 8.849 0.041 2.742 C6 7DB 3 7DB C3 C4 C 0 1 N N R 101.793 93.339 8.813 9.804 2.381 -0.162 C3 7DB 4 7DB O2 O1 O 0 1 N N N 102.534 95.107 7.467 8.374 3.074 -1.985 O2 7DB 5 7DB C2 C5 C 0 1 N N R 101.418 94.739 8.366 8.366 2.631 -0.627 C2 7DB 6 7DB O3 O2 O 0 1 N N N 103.020 93.271 9.508 10.536 3.608 -0.191 O3 7DB 7 7DB O4 O3 O 0 1 N N N 100.655 93.410 10.902 9.214 2.811 2.144 O4 7DB 8 7DB O6 O4 O 0 1 N N N 96.899 92.912 9.072 8.154 -1.208 2.760 O6 7DB 9 7DB O5 O5 O 0 1 N N N 99.092 94.410 8.533 7.612 0.855 0.832 O5 7DB 10 7DB C1 C6 C 0 1 N N S 100.125 94.765 7.652 7.569 1.328 -0.518 C1 7DB 11 7DB CBQ C7 C 0 1 N N N 99.770 96.182 7.120 6.116 1.584 -0.924 CBQ 7DB 12 7DB CBE C8 C 0 1 N N N 98.675 95.955 6.062 5.350 0.259 -0.935 CBE 7DB 13 7DB NAA N1 N 0 1 N N N 97.943 97.187 5.666 3.958 0.504 -1.324 NAA 7DB 14 7DB C C9 C 0 1 N N N 98.586 98.068 4.824 3.090 -0.524 -1.402 C 7DB 15 7DB O O6 O 0 1 N N N 99.716 97.836 4.430 3.460 -1.651 -1.151 O 7DB 16 7DB CA C10 C 0 1 N N S 97.813 99.255 4.346 1.659 -0.273 -1.802 CA 7DB 17 7DB N N2 N 0 1 N N N 96.521 99.440 5.018 1.057 -1.522 -2.273 N 7DB 18 7DB CBS C11 C 0 1 N N N 95.351 99.150 4.399 0.983 -2.587 -1.451 CBS 7DB 19 7DB OBV O7 O 0 1 N N N 95.356 98.853 3.227 1.415 -2.511 -0.320 OBV 7DB 20 7DB CBT C12 C 0 1 N N N 94.031 99.313 5.181 0.363 -3.872 -1.936 CBT 7DB 21 7DB CBU C13 C 0 1 Y N N 93.641 100.644 4.860 0.404 -4.897 -0.832 CBU 7DB 22 7DB CBW C14 C 0 1 Y N N 94.089 101.746 5.643 -0.649 -4.996 0.058 CBW 7DB 23 7DB CBX C15 C 0 1 Y N N 93.736 103.067 5.299 -0.611 -5.936 1.071 CBX 7DB 24 7DB CBY C16 C 0 1 Y N N 92.932 103.314 4.168 0.479 -6.777 1.194 CBY 7DB 25 7DB CBZ C17 C 0 1 Y N N 92.480 102.245 3.380 1.532 -6.679 0.303 CBZ 7DB 26 7DB CCA C18 C 0 1 Y N N 92.836 100.925 3.723 1.492 -5.743 -0.713 CCA 7DB 27 7DB CB C19 C 0 1 N N N 98.703 100.466 4.591 0.876 0.247 -0.594 CB 7DB 28 7DB CG C20 C 0 1 Y N N 98.130 101.739 3.994 -0.522 0.614 -1.022 CG 7DB 29 7DB CD1 C21 C 0 1 Y N N 98.428 102.343 2.795 -1.678 0.160 -0.486 CD1 7DB 30 7DB ND2 N3 N 0 1 Y N N 97.286 102.541 4.643 -0.863 1.458 -2.002 ND2 7DB 31 7DB NAJ N4 N 0 1 Y N N 97.042 103.581 3.847 -2.146 1.518 -2.072 NAJ 7DB 32 7DB NAI N5 N 0 1 Y N N 97.745 103.434 2.721 -2.675 0.755 -1.181 NAI 7DB 33 7DB CAR C22 C 0 1 N N R 97.702 104.504 1.763 -4.110 0.566 -0.956 CAR 7DB 34 7DB CBA C23 C 0 1 N N N 98.961 105.360 2.086 -4.462 -0.886 -1.147 CBA 7DB 35 7DB OBC O8 O 0 1 N N N 98.775 106.266 2.866 -4.319 -1.751 -0.131 OBC 7DB 36 7DB OBB O9 O 0 1 N N N 99.986 105.083 1.498 -4.873 -1.273 -2.216 OBB 7DB 37 7DB OAS O10 O 0 1 N N N 97.918 103.878 0.561 -4.440 0.965 0.376 OAS 7DB 38 7DB CAQ C24 C 0 1 N N N 96.398 105.249 1.876 -4.900 1.419 -1.952 CAQ 7DB 39 7DB CAP C25 C 0 1 N N S 96.302 106.146 0.657 -6.398 1.262 -1.672 CAP 7DB 40 7DB OBD O11 O 0 1 N N N 94.953 106.787 0.741 -7.140 2.111 -2.550 OBD 7DB 41 7DB CAO C26 C 0 1 N N R 96.485 105.474 -0.610 -6.678 1.658 -0.219 CAO 7DB 42 7DB NAN N6 N 0 1 N N N 96.425 106.478 -1.707 -8.095 1.441 0.083 NAN 7DB 43 7DB CAL C27 C 0 1 N N N 95.704 106.308 -2.795 -9.000 2.397 -0.208 CAL 7DB 44 7DB OAM O12 O 0 1 N N N 95.148 105.239 -3.082 -8.641 3.436 -0.721 OAM 7DB 45 7DB CAK C28 C 0 1 N N N 95.618 107.505 -3.800 -10.458 2.174 0.102 CAK 7DB 46 7DB CAT C29 C 0 1 N N R 97.821 104.755 -0.580 -5.819 0.796 0.711 CAT 7DB 47 7DB CAU C30 C 0 1 N N R 98.203 103.908 -1.763 -6.049 1.226 2.161 CAU 7DB 48 7DB OAZ O13 O 0 1 N N N 97.148 102.999 -2.126 -5.796 2.627 2.289 OAZ 7DB 49 7DB CAV C31 C 0 1 N N R 99.515 103.126 -1.558 -5.100 0.452 3.079 CAV 7DB 50 7DB OAY O14 O 0 1 N N N 100.602 104.023 -1.101 -5.352 -0.949 2.952 OAY 7DB 51 7DB CAW C32 C 0 1 N N N 99.969 102.455 -2.870 -5.329 0.882 4.529 CAW 7DB 52 7DB OAX O15 O 0 1 N N N 100.920 101.454 -2.606 -4.366 0.246 5.372 OAX 7DB 53 7DB H1 H1 H 0 1 N N N 100.766 91.715 9.758 10.794 1.601 1.588 H1 7DB 54 7DB H2 H2 H 0 1 N N N 99.342 92.421 8.041 9.382 -0.199 0.668 H2 7DB 55 7DB H3 H3 H 0 1 N N N 98.172 91.577 10.001 9.857 -0.098 3.134 H3 7DB 56 7DB H4 H4 H 0 1 N N N 98.115 93.227 10.711 8.316 0.762 3.361 H4 7DB 57 7DB H5 H5 H 0 1 N N N 101.863 92.714 7.911 10.281 1.656 -0.822 H5 7DB 58 7DB H6 H6 H 0 1 N N N 103.352 95.082 7.950 8.866 3.894 -2.129 H6 7DB 59 7DB H7 H7 H 0 1 N N N 101.389 95.413 9.235 7.907 3.393 0.002 H7 7DB 60 7DB H8 H8 H 0 1 N N N 103.194 92.371 9.758 11.455 3.525 0.099 H8 7DB 61 7DB H9 H9 H 0 1 N N N 99.936 93.080 11.427 9.165 2.529 3.068 H9 7DB 62 7DB H10 H10 H 0 1 N N N 96.161 92.654 9.611 8.067 -1.597 3.641 H10 7DB 63 7DB H11 H11 H 0 1 N N N 100.162 94.071 6.799 8.005 0.579 -1.179 H11 7DB 64 7DB H12 H12 H 0 1 N N N 100.653 96.655 6.666 5.654 2.265 -0.210 H12 7DB 65 7DB H13 H13 H 0 1 N N N 99.393 96.816 7.935 6.089 2.027 -1.919 H13 7DB 66 7DB H14 H14 H 0 1 N N N 97.947 95.237 6.468 5.812 -0.422 -1.649 H14 7DB 67 7DB H15 H15 H 0 1 N N N 99.147 95.531 5.163 5.376 -0.184 0.060 H15 7DB 68 7DB H16 H16 H 0 1 N N N 97.018 97.370 5.999 3.662 1.405 -1.525 H16 7DB 69 7DB H17 H17 H 0 1 N N N 97.647 99.158 3.263 1.630 0.469 -2.600 H17 7DB 70 7DB H18 H18 H 0 1 N N N 96.504 99.788 5.955 0.712 -1.583 -3.178 H18 7DB 71 7DB H19 H19 H 0 1 N N N 93.277 98.586 4.843 -0.672 -3.690 -2.225 H19 7DB 72 7DB H20 H20 H 0 1 N N N 94.194 99.197 6.263 0.921 -4.242 -2.796 H20 7DB 73 7DB H21 H21 H 0 1 N N N 94.707 101.568 6.511 -1.500 -4.339 -0.037 H21 7DB 74 7DB H22 H22 H 0 1 N N N 94.083 103.892 5.904 -1.434 -6.013 1.767 H22 7DB 75 7DB H23 H23 H 0 1 N N N 92.664 104.327 3.908 0.508 -7.512 1.985 H23 7DB 76 7DB H24 H24 H 0 1 N N N 91.862 102.433 2.514 2.381 -7.339 0.396 H24 7DB 77 7DB H25 H25 H 0 1 N N N 92.489 100.108 3.108 2.314 -5.665 -1.409 H25 7DB 78 7DB H26 H26 H 0 1 N N N 99.688 100.277 4.139 0.830 -0.529 0.170 H26 7DB 79 7DB H27 H27 H 0 1 N N N 98.818 100.606 5.676 1.375 1.127 -0.189 H27 7DB 80 7DB H28 H28 H 0 1 N N N 99.113 101.970 2.048 -1.785 -0.538 0.331 H28 7DB 81 7DB H29 H29 H 0 1 N N N 99.577 106.765 2.969 -4.558 -2.673 -0.302 H29 7DB 82 7DB H30 H30 H 0 1 N N N 96.386 105.855 2.794 -4.616 2.465 -1.842 H30 7DB 83 7DB H31 H31 H 0 1 N N N 95.557 104.540 1.893 -4.682 1.087 -2.968 H31 7DB 84 7DB H32 H32 H 0 1 N N N 97.063 106.934 0.755 -6.693 0.225 -1.832 H32 7DB 85 7DB H33 H33 H 0 1 N N N 94.860 107.220 1.581 -7.005 1.921 -3.488 H33 7DB 86 7DB H34 H34 H 0 1 N N N 95.686 104.732 -0.756 -6.430 2.709 -0.073 H34 7DB 87 7DB H35 H35 H 0 1 N N N 96.957 107.320 -1.613 -8.382 0.610 0.493 H35 7DB 88 7DB H36 H36 H 0 1 N N N 95.033 107.203 -4.681 -10.580 2.014 1.173 H36 7DB 89 7DB H37 H37 H 0 1 N N N 95.128 108.360 -3.311 -11.031 3.049 -0.202 H37 7DB 90 7DB H38 H38 H 0 1 N N N 96.632 107.794 -4.114 -10.815 1.299 -0.440 H38 7DB 91 7DB H39 H39 H 0 1 N N N 98.596 105.528 -0.475 -6.096 -0.252 0.594 H39 7DB 92 7DB H40 H40 H 0 1 N N N 98.370 104.590 -2.610 -7.080 1.016 2.444 H40 7DB 93 7DB H41 H41 H 0 1 N N N 96.341 103.484 -2.252 -4.895 2.887 2.053 H41 7DB 94 7DB H42 H42 H 0 1 N N N 99.344 102.344 -0.804 -4.069 0.662 2.796 H42 7DB 95 7DB H43 H43 H 0 1 N N N 100.389 104.368 -0.242 -6.253 -1.209 3.188 H43 7DB 96 7DB H44 H44 H 0 1 N N N 100.415 103.214 -3.529 -5.224 1.964 4.608 H44 7DB 97 7DB H45 H45 H 0 1 N N N 99.097 102.004 -3.367 -6.333 0.591 4.840 H45 7DB 98 7DB H46 H46 H 0 1 N N N 101.190 101.050 -3.422 -4.452 0.474 6.308 H46 7DB 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7DB CAK CAL SING N N 1 7DB OAM CAL DOUB N N 2 7DB CAW OAX SING N N 3 7DB CAW CAV SING N N 4 7DB CAL NAN SING N N 5 7DB OAZ CAU SING N N 6 7DB CAU CAV SING N N 7 7DB CAU CAT SING N N 8 7DB NAN CAO SING N N 9 7DB CAV OAY SING N N 10 7DB CAO CAT SING N N 11 7DB CAO CAP SING N N 12 7DB CAT OAS SING N N 13 7DB OAS CAR SING N N 14 7DB CAP OBD SING N N 15 7DB CAP CAQ SING N N 16 7DB OBB CBA DOUB N N 17 7DB CAR CAQ SING N N 18 7DB CAR CBA SING N N 19 7DB CAR NAI SING N N 20 7DB CBA OBC SING N N 21 7DB NAI CD1 SING Y N 22 7DB NAI NAJ SING Y N 23 7DB CD1 CG DOUB Y N 24 7DB OBV CBS DOUB N N 25 7DB CBZ CCA DOUB Y N 26 7DB CBZ CBY SING Y N 27 7DB CCA CBU SING Y N 28 7DB NAJ ND2 DOUB Y N 29 7DB CG CB SING N N 30 7DB CG ND2 SING Y N 31 7DB CBY CBX DOUB Y N 32 7DB CA CB SING N N 33 7DB CA C SING N N 34 7DB CA N SING N N 35 7DB CBS N SING N N 36 7DB CBS CBT SING N N 37 7DB O C DOUB N N 38 7DB C NAA SING N N 39 7DB CBU CBT SING N N 40 7DB CBU CBW DOUB Y N 41 7DB CBX CBW SING Y N 42 7DB NAA CBE SING N N 43 7DB CBE CBQ SING N N 44 7DB CBQ C1 SING N N 45 7DB O2 C2 SING N N 46 7DB C1 C2 SING N N 47 7DB C1 O5 SING N N 48 7DB C2 C3 SING N N 49 7DB O5 C5 SING N N 50 7DB C3 O3 SING N N 51 7DB C3 C4 SING N N 52 7DB C5 C4 SING N N 53 7DB C5 C6 SING N N 54 7DB O6 C6 SING N N 55 7DB C4 O4 SING N N 56 7DB C4 H1 SING N N 57 7DB C5 H2 SING N N 58 7DB C6 H3 SING N N 59 7DB C6 H4 SING N N 60 7DB C3 H5 SING N N 61 7DB O2 H6 SING N N 62 7DB C2 H7 SING N N 63 7DB O3 H8 SING N N 64 7DB O4 H9 SING N N 65 7DB O6 H10 SING N N 66 7DB C1 H11 SING N N 67 7DB CBQ H12 SING N N 68 7DB CBQ H13 SING N N 69 7DB CBE H14 SING N N 70 7DB CBE H15 SING N N 71 7DB NAA H16 SING N N 72 7DB CA H17 SING N N 73 7DB N H18 SING N N 74 7DB CBT H19 SING N N 75 7DB CBT H20 SING N N 76 7DB CBW H21 SING N N 77 7DB CBX H22 SING N N 78 7DB CBY H23 SING N N 79 7DB CBZ H24 SING N N 80 7DB CCA H25 SING N N 81 7DB CB H26 SING N N 82 7DB CB H27 SING N N 83 7DB CD1 H28 SING N N 84 7DB OBC H29 SING N N 85 7DB CAQ H30 SING N N 86 7DB CAQ H31 SING N N 87 7DB CAP H32 SING N N 88 7DB OBD H33 SING N N 89 7DB CAO H34 SING N N 90 7DB NAN H35 SING N N 91 7DB CAK H36 SING N N 92 7DB CAK H37 SING N N 93 7DB CAK H38 SING N N 94 7DB CAT H39 SING N N 95 7DB CAU H40 SING N N 96 7DB OAZ H41 SING N N 97 7DB CAV H42 SING N N 98 7DB OAY H43 SING N N 99 7DB CAW H44 SING N N 100 7DB CAW H45 SING N N 101 7DB OAX H46 SING N N 102 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7DB InChI InChI 1.03 ;InChI=1S/C32H46N6O15/c1-15(41)34-24-19(42)11-32(31(50)51,53-29(24)25(45)20(43)13-39)38-12-17(36-37-38)10-18(35-23(44)9-16-5-3-2-4-6-16)30(49)33-8-7-21-26(46)28(48)27(47)22(14-40)52-21/h2-6,12,18-22,24-29,39-40,42-43,45-48H,7-11,13-14H2,1H3,(H,33,49)(H,34,41)(H,35,44)(H,50,51)/t18-,19-,20+,21-,22+,24+,25+,26-,27-,28+,29+,32+/m0/s1 ; 7DB InChIKey InChI 1.03 VJJPXKHAIAQVCK-WZAWTCGUSA-N 7DB SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@](O[C@H]1[C@H](O)[C@H](O)CO)(n2cc(C[C@H](NC(=O)Cc3ccccc3)C(=O)NCC[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)nn2)C(O)=O" 7DB SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)C[C](O[CH]1[CH](O)[CH](O)CO)(n2cc(C[CH](NC(=O)Cc3ccccc3)C(=O)NCC[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)nn2)C(O)=O" 7DB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)n2cc(nn2)C[C@@H](C(=O)NCC[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)Cc4ccccc4)O" 7DB SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)n2cc(nn2)CC(C(=O)NCCC3C(C(C(C(O3)CO)O)O)O)NC(=O)Cc4ccccc4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{S})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7DB "Create component" 2016-10-10 RCSB 7DB "Initial release" 2017-05-31 RCSB #