data_7KD # _chem_comp.id 7KD _chem_comp.name "~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H21 F3 N8 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-11-04 _chem_comp.pdbx_modified_date 2017-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7KD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5MAH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7KD C1 C1 C 0 1 Y N N -16.205 7.682 -5.579 -0.041 2.129 0.427 C1 7KD 1 7KD C2 C2 C 0 1 Y N N -15.511 8.836 -5.148 -0.570 1.025 -0.246 C2 7KD 2 7KD C8 C3 C 0 1 N N N -16.759 7.493 -6.912 -0.934 3.258 0.874 C8 7KD 3 7KD C13 C4 C 0 1 Y N N -13.893 9.008 -1.257 3.750 -0.817 -0.607 C13 7KD 4 7KD C14 C5 C 0 1 Y N N -13.781 9.041 0.137 4.372 0.419 -0.754 C14 7KD 5 7KD C15 C6 C 0 1 Y N N -13.105 10.056 0.798 5.735 0.529 -0.595 C15 7KD 6 7KD C16 C7 C 0 1 Y N N -12.517 11.110 0.100 6.494 -0.604 -0.285 C16 7KD 7 7KD C19 C8 C 0 1 N N N -11.829 12.158 0.762 7.955 -0.490 -0.112 C19 7KD 8 7KD C22 C9 C 0 1 N N N -13.810 12.609 2.289 10.135 -1.469 0.358 C22 7KD 9 7KD C24 C10 C 0 1 Y N N -13.596 11.381 -6.367 -3.957 -0.047 -1.396 C24 7KD 10 7KD N26 N1 N 0 1 Y N N -12.216 12.266 -8.113 -6.131 -0.277 -0.526 N26 7KD 11 7KD C27 C11 C 0 1 Y N N -11.081 11.639 -7.552 -6.610 0.227 -1.651 C27 7KD 12 7KD N29 N2 N 0 1 Y N N -12.533 10.765 -5.839 -4.442 0.465 -2.511 N29 7KD 13 7KD C32 C12 C 0 1 N N N -14.315 14.164 -8.462 -4.061 -0.083 1.954 C32 7KD 14 7KD C33 C13 C 0 1 N N N -13.810 11.645 -10.698 -5.546 -3.304 1.526 C33 7KD 15 7KD N20 N3 N 0 1 N N N -12.435 12.859 1.769 8.685 -1.582 0.187 N20 7KD 16 7KD O21 O1 O 0 1 N N N -10.707 12.490 0.382 8.500 0.590 -0.241 O21 7KD 17 7KD C17 C14 C 0 1 Y N N -12.601 11.088 -1.295 5.865 -1.844 -0.137 C17 7KD 18 7KD C18 C15 C 0 1 Y N N -13.269 10.055 -1.977 4.502 -1.946 -0.298 C18 7KD 19 7KD N12 N4 N 0 1 N N N -14.604 7.950 -1.758 2.370 -0.923 -0.764 N12 7KD 20 7KD C4 C16 C 0 1 Y N N -15.123 7.920 -2.993 1.545 0.114 -0.360 C4 7KD 21 7KD N3 N5 N 0 1 Y N N -15.011 8.902 -3.898 0.248 0.046 -0.620 N3 7KD 22 7KD N5 N6 N 0 1 Y N N -15.773 6.797 -3.352 2.073 1.149 0.276 N5 7KD 23 7KD C6 C17 C 0 1 Y N N -16.304 6.670 -4.634 1.317 2.160 0.678 C6 7KD 24 7KD F10 F1 F 0 1 N N N -17.323 6.264 -7.039 -0.165 4.233 1.519 F10 7KD 25 7KD F11 F2 F 0 1 N N N -17.627 8.396 -7.218 -1.564 3.823 -0.239 F11 7KD 26 7KD F9 F3 F 0 1 N N N -15.762 7.617 -7.875 -1.900 2.766 1.758 F9 7KD 27 7KD N7 N7 N 0 1 N N N -15.365 9.859 -6.006 -1.926 0.951 -0.519 N7 7KD 28 7KD C23 C18 C 0 1 N N N -14.806 11.180 -5.670 -2.468 -0.212 -1.226 C23 7KD 29 7KD C28 C19 C 0 1 Y N N -11.251 10.879 -6.414 -5.747 0.610 -2.661 C28 7KD 30 7KD C25 C20 C 0 1 Y N N -13.434 12.153 -7.535 -4.822 -0.429 -0.373 C25 7KD 31 7KD N30 N8 N 0 1 N N N -14.513 12.750 -8.093 -4.315 -0.959 0.808 N30 7KD 32 7KD S31 S1 S 0 1 N N N -15.049 11.782 -9.423 -3.998 -2.580 0.919 S31 7KD 33 7KD O34 O2 O 0 1 N N N -15.372 10.405 -8.853 -2.983 -2.672 1.909 O34 7KD 34 7KD O35 O3 O 0 1 N N N -16.278 12.353 -10.101 -3.751 -2.982 -0.422 O35 7KD 35 7KD H1 H1 H 0 1 N N N -14.235 8.251 0.717 3.785 1.293 -0.994 H1 7KD 36 7KD H2 H2 H 0 1 N N N -13.033 10.029 1.875 6.217 1.488 -0.710 H2 7KD 37 7KD H3 H3 H 0 1 N N N -14.033 13.322 3.096 10.582 -1.099 -0.565 H3 7KD 38 7KD H4 H4 H 0 1 N N N -14.539 12.737 1.475 10.353 -0.776 1.171 H4 7KD 39 7KD H5 H5 H 0 1 N N N -13.873 11.583 2.679 10.551 -2.449 0.595 H5 7KD 40 7KD H6 H6 H 0 1 N N N -10.106 11.752 -8.003 -7.675 0.351 -1.776 H6 7KD 41 7KD H7 H7 H 0 1 N N N -13.976 14.729 -7.581 -4.922 -0.100 2.622 H7 7KD 42 7KD H8 H8 H 0 1 N N N -13.557 14.233 -9.256 -3.178 -0.432 2.489 H8 7KD 43 7KD H9 H9 H 0 1 N N N -15.265 14.585 -8.824 -3.894 0.936 1.603 H9 7KD 44 7KD H10 H10 H 0 1 N N N -12.885 11.233 -10.268 -5.795 -2.871 2.494 H10 7KD 45 7KD H11 H11 H 0 1 N N N -14.174 10.977 -11.493 -6.348 -3.094 0.817 H11 7KD 46 7KD H12 H12 H 0 1 N N N -13.607 12.640 -11.120 -5.427 -4.383 1.630 H12 7KD 47 7KD H13 H13 H 0 1 N N N -11.913 13.600 2.191 8.250 -2.443 0.289 H13 7KD 48 7KD H14 H14 H 0 1 N N N -12.142 11.884 -1.863 6.449 -2.720 0.103 H14 7KD 49 7KD H15 H15 H 0 1 N N N -13.306 10.061 -3.056 4.016 -2.904 -0.184 H15 7KD 50 7KD H16 H16 H 0 1 N N N -14.744 7.154 -1.168 1.987 -1.724 -1.156 H16 7KD 51 7KD H17 H17 H 0 1 N N N -16.809 5.754 -4.901 1.757 2.999 1.196 H17 7KD 52 7KD H18 H18 H 0 1 N N N -16.282 10.042 -6.359 -2.516 1.669 -0.243 H18 7KD 53 7KD H19 H19 H 0 1 N N N -14.616 11.231 -4.588 -2.266 -1.114 -0.649 H19 7KD 54 7KD H20 H20 H 0 1 N N N -15.525 11.963 -5.954 -1.997 -0.294 -2.205 H20 7KD 55 7KD H21 H21 H 0 1 N N N -10.408 10.374 -5.966 -6.141 1.029 -3.575 H21 7KD 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7KD C33 S31 SING N N 1 7KD O35 S31 DOUB N N 2 7KD S31 O34 DOUB N N 3 7KD S31 N30 SING N N 4 7KD C32 N30 SING N N 5 7KD N26 C27 DOUB Y N 6 7KD N26 C25 SING Y N 7 7KD N30 C25 SING N N 8 7KD F9 C8 SING N N 9 7KD C27 C28 SING Y N 10 7KD C25 C24 DOUB Y N 11 7KD F11 C8 SING N N 12 7KD F10 C8 SING N N 13 7KD C8 C1 SING N N 14 7KD C28 N29 DOUB Y N 15 7KD C24 N29 SING Y N 16 7KD C24 C23 SING N N 17 7KD N7 C23 SING N N 18 7KD N7 C2 SING N N 19 7KD C1 C2 DOUB Y N 20 7KD C1 C6 SING Y N 21 7KD C2 N3 SING Y N 22 7KD C6 N5 DOUB Y N 23 7KD N3 C4 DOUB Y N 24 7KD N5 C4 SING Y N 25 7KD C4 N12 SING N N 26 7KD C18 C17 DOUB Y N 27 7KD C18 C13 SING Y N 28 7KD N12 C13 SING N N 29 7KD C17 C16 SING Y N 30 7KD C13 C14 DOUB Y N 31 7KD C16 C19 SING N N 32 7KD C16 C15 DOUB Y N 33 7KD C14 C15 SING Y N 34 7KD O21 C19 DOUB N N 35 7KD C19 N20 SING N N 36 7KD N20 C22 SING N N 37 7KD C14 H1 SING N N 38 7KD C15 H2 SING N N 39 7KD C22 H3 SING N N 40 7KD C22 H4 SING N N 41 7KD C22 H5 SING N N 42 7KD C27 H6 SING N N 43 7KD C32 H7 SING N N 44 7KD C32 H8 SING N N 45 7KD C32 H9 SING N N 46 7KD C33 H10 SING N N 47 7KD C33 H11 SING N N 48 7KD C33 H12 SING N N 49 7KD N20 H13 SING N N 50 7KD C17 H14 SING N N 51 7KD C18 H15 SING N N 52 7KD N12 H16 SING N N 53 7KD C6 H17 SING N N 54 7KD N7 H18 SING N N 55 7KD C23 H19 SING N N 56 7KD C23 H20 SING N N 57 7KD C28 H21 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7KD InChI InChI 1.03 "InChI=1S/C20H21F3N8O3S/c1-24-18(32)12-4-6-13(7-5-12)29-19-28-10-14(20(21,22)23)16(30-19)27-11-15-17(26-9-8-25-15)31(2)35(3,33)34/h4-10H,11H2,1-3H3,(H,24,32)(H2,27,28,29,30)" 7KD InChIKey InChI 1.03 FWLMVFUGMHIOAA-UHFFFAOYSA-N 7KD SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1ccc(Nc2ncc(c(NCc3nccnc3N(C)[S](C)(=O)=O)n2)C(F)(F)F)cc1" 7KD SMILES CACTVS 3.385 "CNC(=O)c1ccc(Nc2ncc(c(NCc3nccnc3N(C)[S](C)(=O)=O)n2)C(F)(F)F)cc1" 7KD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CNC(=O)c1ccc(cc1)Nc2ncc(c(n2)NCc3c(nccn3)N(C)S(=O)(=O)C)C(F)(F)F" 7KD SMILES "OpenEye OEToolkits" 2.0.6 "CNC(=O)c1ccc(cc1)Nc2ncc(c(n2)NCc3c(nccn3)N(C)S(=O)(=O)C)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7KD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7KD "Create component" 2016-11-04 RCSB 7KD "Initial release" 2017-12-06 RCSB #