data_7MO # _chem_comp.id 7MO _chem_comp.name "5'-O-[(R)-amino(3-aminopropoxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N7 O6 P" _chem_comp.mon_nstd_parent_comp_id 7MD _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-15 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 403.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7MO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FSQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7MO N43 N1 N 0 1 N N N N N N 74.042 16.770 43.550 3.483 -0.521 2.266 N43 7MO 1 7MO P44 P1 P 0 1 N N R N N N 73.209 15.314 42.938 3.701 0.356 0.846 P44 7MO 2 7MO O69 O1 O 0 1 N N N N N N 71.784 15.460 43.316 4.350 1.649 1.160 O69 7MO 3 7MO O45 O2 O 0 1 N N N N N N 73.347 15.249 41.322 4.633 -0.481 -0.164 O45 7MO 4 7MO C46 C1 C 0 1 N N N N N N 72.058 15.312 40.702 6.026 -0.702 0.064 C46 7MO 5 7MO C47 C2 C 0 1 N N N N N N 71.334 14.014 41.072 6.606 -1.531 -1.084 C47 7MO 6 7MO C48 C3 C 0 1 N N N N N N 69.830 13.927 40.514 8.098 -1.767 -0.839 C48 7MO 7 7MO N49 N2 N 0 1 N N N N N N 69.517 12.566 40.173 8.655 -2.563 -1.941 N49 7MO 8 7MO O50 O3 O 0 1 N N N N N N 73.998 14.112 43.910 2.271 0.627 0.158 O50 7MO 9 7MO C51 C4 C 0 1 N N N N N N 75.115 14.446 44.967 1.340 1.593 0.650 C51 7MO 10 7MO C52 C5 C 0 1 N N R N N N 74.998 14.217 46.612 0.091 1.594 -0.232 C52 7MO 11 7MO C53 C6 C 0 1 N N S N N N 75.628 13.174 47.042 -0.877 2.716 0.206 C53 7MO 12 7MO O54 O4 O 0 1 N N N N N N 77.037 13.589 47.098 -0.725 3.863 -0.633 O54 7MO 13 7MO C55 C7 C 0 1 N N R N N N 75.053 12.902 48.509 -2.279 2.095 0.024 C55 7MO 14 7MO O56 O5 O 0 1 N N N N N N 75.561 13.779 49.503 -3.037 2.839 -0.932 O56 7MO 15 7MO C57 C8 C 0 1 N N R N N N 73.577 13.059 48.080 -1.994 0.670 -0.502 C57 7MO 16 7MO O68 O6 O 0 1 N N N N N N 73.505 14.183 47.411 -0.656 0.371 -0.049 O68 7MO 17 7MO N58 N3 N 0 1 Y N N N N N 72.593 12.085 47.371 -2.951 -0.283 0.064 N58 7MO 18 7MO C67 C9 C 0 1 Y N N N N N 72.321 11.317 46.287 -2.764 -1.052 1.174 C67 7MO 19 7MO N66 N4 N 0 1 Y N N N N N 71.108 10.613 46.500 -3.819 -1.784 1.391 N66 7MO 20 7MO C65 C10 C 0 1 Y N N N N N 70.603 10.908 47.741 -4.746 -1.532 0.436 C65 7MO 21 7MO C59 C11 C 0 1 Y N N N N N 71.521 11.828 48.276 -4.203 -0.563 -0.424 C59 7MO 22 7MO C63 C12 C 0 1 Y N N N N N 69.407 10.599 48.587 -6.040 -2.010 0.165 C63 7MO 23 7MO N64 N5 N 0 1 N N N N N N 68.362 9.639 48.090 -6.629 -2.960 0.979 N64 7MO 24 7MO N62 N6 N 0 1 Y N N N N N 69.303 11.162 49.821 -6.684 -1.527 -0.892 N62 7MO 25 7MO C61 C13 C 0 1 Y N N N N N 70.235 12.043 50.291 -6.130 -0.619 -1.675 C61 7MO 26 7MO N60 N7 N 0 1 Y N N N N N 71.311 12.339 49.529 -4.926 -0.135 -1.454 N60 7MO 27 7MO H1 H1 H 0 1 N N N N N N 73.957 16.810 44.546 3.041 -1.408 2.078 H1 7MO 28 7MO H2 H2 H 0 1 N N N N N N 75.009 16.730 43.300 4.359 -0.649 2.750 H2 7MO 29 7MO H3 H3 H 0 1 N N N N N N 72.165 15.390 39.610 6.542 0.257 0.116 H3 7MO 30 7MO H4 H4 H 0 1 N N N N N N 71.497 16.180 41.078 6.160 -1.238 1.003 H4 7MO 31 7MO H5 H5 H 0 1 N N N N N N 71.302 13.936 42.169 6.090 -2.490 -1.136 H5 7MO 32 7MO H6 H6 H 0 1 N N N N N N 71.906 13.169 40.661 6.472 -0.994 -2.023 H6 7MO 33 7MO H7 H7 H 0 1 N N N N N N 69.735 14.559 39.619 8.614 -0.809 -0.787 H7 7MO 34 7MO H8 H8 H 0 1 N N N N N N 69.132 14.280 41.288 8.232 -2.304 0.100 H8 7MO 35 7MO H9 H9 H 0 1 N N N N N N 68.580 12.516 39.826 8.486 -2.117 -2.831 H9 7MO 36 7MO H10 H10 H 0 1 N N N N N N 70.151 12.245 39.469 9.640 -2.733 -1.803 H10 7MO 37 7MO H12 H12 H 0 1 N N N N N N 75.993 13.861 44.655 1.062 1.340 1.674 H12 7MO 38 7MO H13 H13 H 0 1 N N N N N N 75.324 15.518 44.838 1.799 2.582 0.632 H13 7MO 39 7MO H14 H14 H 0 1 N N N N N N 75.493 15.104 47.034 0.367 1.718 -1.279 H14 7MO 40 7MO H15 H15 H 0 1 N N N N N N 75.499 12.274 46.422 -0.706 2.982 1.249 H15 7MO 41 7MO H16 H16 H 0 1 N N N N N N 77.569 12.866 47.409 -1.309 4.599 -0.402 H16 7MO 42 7MO H17 H17 H 0 1 N N N N N N 75.245 11.851 48.772 -2.805 2.053 0.978 H17 7MO 43 7MO H18 H18 H 0 1 N N N N N N 75.178 13.560 50.344 -3.194 3.759 -0.679 H18 7MO 44 7MO H19 H19 H 0 1 N N N N N N 73.068 13.262 49.034 -2.039 0.652 -1.590 H19 7MO 45 7MO H20 H20 H 0 1 N N N N N N 72.933 11.251 45.399 -1.873 -1.054 1.783 H20 7MO 46 7MO H21 H21 H 0 1 N N N N N N 67.657 9.522 48.789 -6.149 -3.305 1.748 H21 7MO 47 7MO H22 H22 H 0 1 N N N N N N 67.947 10.001 47.255 -7.523 -3.282 0.782 H22 7MO 48 7MO H23 H23 H 0 1 N N N N N N 70.113 12.499 51.263 -6.689 -0.254 -2.524 H23 7MO 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7MO N49 C48 SING N N 1 7MO C48 C47 SING N N 2 7MO C46 C47 SING N N 3 7MO C46 O45 SING N N 4 7MO O45 P44 SING N N 5 7MO P44 O69 DOUB N N 6 7MO P44 N43 SING N N 7 7MO P44 O50 SING N N 8 7MO O50 C51 SING N N 9 7MO C51 C52 SING N N 10 7MO C67 N66 DOUB Y N 11 7MO C67 N58 SING Y N 12 7MO N66 C65 SING Y N 13 7MO C52 C53 SING N N 14 7MO C52 O68 SING N N 15 7MO C53 O54 SING N N 16 7MO C53 C55 SING N N 17 7MO N58 C57 SING N N 18 7MO N58 C59 SING Y N 19 7MO O68 C57 SING N N 20 7MO C65 C59 DOUB Y N 21 7MO C65 C63 SING Y N 22 7MO C57 C55 SING N N 23 7MO N64 C63 SING N N 24 7MO C59 N60 SING Y N 25 7MO C55 O56 SING N N 26 7MO C63 N62 DOUB Y N 27 7MO N60 C61 DOUB Y N 28 7MO N62 C61 SING Y N 29 7MO N43 H1 SING N N 30 7MO N43 H2 SING N N 31 7MO C46 H3 SING N N 32 7MO C46 H4 SING N N 33 7MO C47 H5 SING N N 34 7MO C47 H6 SING N N 35 7MO C48 H7 SING N N 36 7MO C48 H8 SING N N 37 7MO N49 H9 SING N N 38 7MO N49 H10 SING N N 39 7MO C51 H12 SING N N 40 7MO C51 H13 SING N N 41 7MO C52 H14 SING N N 42 7MO C53 H15 SING N N 43 7MO O54 H16 SING N N 44 7MO C55 H17 SING N N 45 7MO O56 H18 SING N N 46 7MO C57 H19 SING N N 47 7MO C67 H20 SING N N 48 7MO N64 H21 SING N N 49 7MO N64 H22 SING N N 50 7MO C61 H23 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7MO SMILES ACDLabs 12.01 "NP(=O)(OCCCN)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" 7MO InChI InChI 1.06 "InChI=1S/C13H22N7O6P/c14-2-1-3-24-27(16,23)25-4-7-9(21)10(22)13(26-7)20-6-19-8-11(15)17-5-18-12(8)20/h5-7,9-10,13,21-22H,1-4,14H2,(H2,16,23)(H2,15,17,18)/t7-,9-,10-,13-,27-/m1/s1" 7MO InChIKey InChI 1.06 MBMBAANIBYMPLC-LGVJOIAUSA-N 7MO SMILES_CANONICAL CACTVS 3.385 "NCCCO[P@@](N)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 7MO SMILES CACTVS 3.385 "NCCCO[P](N)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 7MO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(N)OCCCN)O)O)N" 7MO SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(N)OCCCN)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7MO "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-amino(3-aminopropoxy)phosphoryl]adenosine" 7MO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[azanyl(3-azanylpropoxy)phosphoryl]oxymethyl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7MO "Create component" 2023-02-15 RCSB 7MO "Initial release" 2024-02-07 RCSB #