data_7R3 # _chem_comp.id 7R3 _chem_comp.name "(2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 Cl O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Empagliflozin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-14 _chem_comp.pdbx_modified_date 2021-10-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.909 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7R3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7R3 C10 C1 C 0 1 N N R 37.651 47.348 43.225 -4.407 0.397 0.910 C10 7R3 1 7R3 C13 C2 C 0 1 N N R 40.496 47.623 42.829 -4.460 -2.111 -0.517 C13 7R3 2 7R3 C15 C3 C 0 1 N N N 41.264 48.815 43.359 -4.753 -2.893 -1.799 C15 7R3 3 7R3 C17 C4 C 0 1 Y N N 39.126 46.618 46.761 -2.298 1.423 -1.270 C17 7R3 4 7R3 C20 C5 C 0 1 N N N 35.636 49.519 47.531 1.000 2.327 1.292 C20 7R3 5 7R3 C21 C6 C 0 1 Y N N 38.829 47.095 48.196 -1.376 2.382 -1.645 C21 7R3 6 7R3 C22 C7 C 0 1 Y N N 37.668 48.060 48.441 -0.307 2.674 -0.816 C22 7R3 7 7R3 C24 C8 C 0 1 N N N 40.013 55.510 50.131 6.444 -1.753 1.295 C24 7R3 8 7R3 C26 C9 C 0 1 Y N N 36.160 50.911 48.024 2.231 1.607 0.805 C26 7R3 9 7R3 C28 C10 C 0 1 Y N N 37.060 51.742 47.117 2.514 0.335 1.268 C28 7R3 10 7R3 C09 C11 C 0 1 N N R 38.226 47.260 41.896 -5.447 -0.670 1.265 C09 7R3 11 7R3 C11 C12 C 0 1 N N S 39.411 48.142 41.884 -5.758 -1.500 0.017 C11 7R3 12 7R3 C12 C13 C 0 1 N N S 38.576 46.629 44.202 -3.160 -0.287 0.342 C12 7R3 13 7R3 C14 C14 C 0 1 Y N N 38.268 47.106 45.599 -2.155 0.759 -0.066 C14 7R3 14 7R3 C16 C15 C 0 1 Y N N 37.128 48.057 45.836 -1.090 1.055 0.765 C16 7R3 15 7R3 C18 C16 C 0 1 Y N N 36.822 48.540 47.275 -0.161 2.006 0.386 C18 7R3 16 7R3 C19 C17 C 0 1 N N S 39.043 55.091 48.937 5.776 -1.716 -0.093 C19 7R3 17 7R3 C23 C18 C 0 1 N N N 39.075 56.039 48.110 6.774 -2.456 -1.015 C23 7R3 18 7R3 C25 C19 C 0 1 N N N 39.865 57.304 48.824 7.601 -3.286 0.001 C25 7R3 19 7R3 C27 C20 C 0 1 Y N N 37.170 53.658 49.028 4.490 0.284 -0.088 C27 7R3 20 7R3 C29 C21 C 0 1 Y N N 35.745 51.443 49.444 3.072 2.217 -0.107 C29 7R3 21 7R3 C30 C22 C 0 1 Y N N 37.580 53.137 47.616 3.642 -0.327 0.823 C30 7R3 22 7R3 C31 C23 C 0 1 Y N N 36.261 52.828 49.943 4.200 1.558 -0.555 C31 7R3 23 7R3 O2 O1 O 0 1 N N N 40.040 46.813 43.962 -3.525 -1.067 -0.799 O2 7R3 24 7R3 O3 O2 O 0 1 N N N 37.253 47.677 40.848 -6.641 -0.037 1.730 O3 7R3 25 7R3 O4 O3 O 0 1 N N N 36.335 46.714 43.254 -4.055 1.131 2.084 O4 7R3 26 7R3 O5 O4 O 0 1 N N N 39.957 48.189 40.565 -6.674 -2.545 0.353 O5 7R3 27 7R3 O6 O5 O 0 1 N N N 42.301 48.350 44.229 -3.565 -3.557 -2.234 O6 7R3 28 7R3 O7 O6 O 0 1 N N N 39.943 57.019 50.103 7.715 -2.408 1.143 O7 7R3 29 7R3 O8 O7 O 0 1 N N N 37.659 54.937 49.464 5.600 -0.366 -0.527 O8 7R3 30 7R3 CL1 CL1 CL 0 0 N N N 37.304 48.621 50.088 0.852 3.878 -1.286 CL1 7R3 31 7R3 H1 H1 H 0 1 N N N 37.563 48.402 43.527 -4.821 1.077 0.165 H1 7R3 32 7R3 H2 H2 H 0 1 N N N 41.192 47.017 42.231 -4.040 -2.783 0.231 H2 7R3 33 7R3 H3 H3 H 0 1 N N N 41.708 49.371 42.520 -5.531 -3.631 -1.605 H3 7R3 34 7R3 H4 H4 H 0 1 N N N 40.583 49.475 43.916 -5.090 -2.205 -2.575 H4 7R3 35 7R3 H5 H5 H 0 1 N N N 39.944 45.937 46.578 -3.132 1.195 -1.917 H5 7R3 36 7R3 H6 H6 H 0 1 N N N 35.073 49.656 46.596 0.768 2.006 2.307 H6 7R3 37 7R3 H7 H7 H 0 1 N N N 34.974 49.091 48.298 1.180 3.402 1.283 H7 7R3 38 7R3 H8 H8 H 0 1 N N N 39.435 46.751 49.021 -1.490 2.903 -2.584 H8 7R3 39 7R3 H9 H9 H 0 1 N N N 39.653 55.114 51.092 6.592 -0.738 1.663 H9 7R3 40 7R3 H10 H10 H 0 1 N N N 41.039 55.157 49.951 5.820 -2.312 1.992 H10 7R3 41 7R3 H11 H11 H 0 1 N N N 37.338 51.375 46.140 1.853 -0.141 1.977 H11 7R3 42 7R3 H12 H12 H 0 1 N N N 38.543 46.225 41.700 -5.051 -1.319 2.046 H12 7R3 43 7R3 H13 H13 H 0 1 N N N 39.117 49.152 42.206 -6.200 -0.859 -0.746 H13 7R3 44 7R3 H14 H14 H 0 1 N N N 38.351 45.553 44.151 -2.723 -0.935 1.101 H14 7R3 45 7R3 H15 H15 H 0 1 N N N 36.526 48.401 45.008 -0.980 0.536 1.706 H15 7R3 46 7R3 H16 H16 H 0 1 N N N 39.393 54.134 48.524 4.818 -2.236 -0.069 H16 7R3 47 7R3 H17 H17 H 0 1 N N N 38.051 56.339 47.845 6.251 -3.107 -1.714 H17 7R3 48 7R3 H18 H18 H 0 1 N N N 39.612 55.726 47.202 7.410 -1.748 -1.546 H18 7R3 49 7R3 H19 H19 H 0 1 N N N 40.873 57.413 48.397 7.070 -4.199 0.272 H19 7R3 50 7R3 H20 H20 H 0 1 N N N 39.301 58.237 48.676 8.585 -3.519 -0.405 H20 7R3 51 7R3 H21 H21 H 0 1 N N N 35.101 50.848 50.075 2.846 3.208 -0.470 H21 7R3 52 7R3 H22 H22 H 0 1 N N N 38.220 53.734 46.983 3.863 -1.321 1.186 H22 7R3 53 7R3 H23 H23 H 0 1 N N N 35.982 53.197 50.919 4.860 2.036 -1.265 H23 7R3 54 7R3 H24 H24 H 0 1 N N N 36.498 47.101 40.869 -7.344 -0.654 1.974 H24 7R3 55 7R3 H25 H25 H 0 1 N N N 35.971 46.779 44.129 -4.798 1.591 2.498 H25 7R3 56 7R3 H26 H26 H 0 1 N N N 40.719 48.756 40.557 -7.518 -2.230 0.704 H26 7R3 57 7R3 H27 H27 H 0 1 N N N 42.788 49.092 44.566 -3.677 -4.074 -3.044 H27 7R3 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7R3 O5 C11 SING N N 1 7R3 O3 C09 SING N N 2 7R3 C11 C09 SING N N 3 7R3 C11 C13 SING N N 4 7R3 C09 C10 SING N N 5 7R3 C13 C15 SING N N 6 7R3 C13 O2 SING N N 7 7R3 C10 O4 SING N N 8 7R3 C10 C12 SING N N 9 7R3 C15 O6 SING N N 10 7R3 O2 C12 SING N N 11 7R3 C12 C14 SING N N 12 7R3 C14 C16 DOUB Y N 13 7R3 C14 C17 SING Y N 14 7R3 C16 C18 SING Y N 15 7R3 C17 C21 DOUB Y N 16 7R3 C28 C30 DOUB Y N 17 7R3 C28 C26 SING Y N 18 7R3 C18 C20 SING N N 19 7R3 C18 C22 DOUB Y N 20 7R3 C20 C26 SING N N 21 7R3 C30 C27 SING Y N 22 7R3 C26 C29 DOUB Y N 23 7R3 C23 C25 SING N N 24 7R3 C23 C19 SING N N 25 7R3 C21 C22 SING Y N 26 7R3 C22 CL1 SING N N 27 7R3 C25 O7 SING N N 28 7R3 C19 O8 SING N N 29 7R3 C19 C24 SING N N 30 7R3 C27 O8 SING N N 31 7R3 C27 C31 DOUB Y N 32 7R3 C29 C31 SING Y N 33 7R3 O7 C24 SING N N 34 7R3 C10 H1 SING N N 35 7R3 C13 H2 SING N N 36 7R3 C15 H3 SING N N 37 7R3 C15 H4 SING N N 38 7R3 C17 H5 SING N N 39 7R3 C20 H6 SING N N 40 7R3 C20 H7 SING N N 41 7R3 C21 H8 SING N N 42 7R3 C24 H9 SING N N 43 7R3 C24 H10 SING N N 44 7R3 C28 H11 SING N N 45 7R3 C09 H12 SING N N 46 7R3 C11 H13 SING N N 47 7R3 C12 H14 SING N N 48 7R3 C16 H15 SING N N 49 7R3 C19 H16 SING N N 50 7R3 C23 H17 SING N N 51 7R3 C23 H18 SING N N 52 7R3 C25 H19 SING N N 53 7R3 C25 H20 SING N N 54 7R3 C29 H21 SING N N 55 7R3 C30 H22 SING N N 56 7R3 C31 H23 SING N N 57 7R3 O3 H24 SING N N 58 7R3 O4 H25 SING N N 59 7R3 O5 H26 SING N N 60 7R3 O6 H27 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7R3 InChI InChI 1.03 "InChI=1S/C23H27ClO7/c24-18-6-3-14(23-22(28)21(27)20(26)19(11-25)31-23)10-15(18)9-13-1-4-16(5-2-13)30-17-7-8-29-12-17/h1-6,10,17,19-23,25-28H,7-9,11-12H2/t17-,19+,20+,21-,22+,23-/m0/s1" 7R3 InChIKey InChI 1.03 OBWASQILIWPZMG-QZMOQZSNSA-N 7R3 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2ccc(Cl)c(Cc3ccc(O[C@H]4CCOC4)cc3)c2" 7R3 SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2ccc(Cl)c(Cc3ccc(O[CH]4CCOC4)cc3)c2" 7R3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2cc(ccc2Cl)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O[C@H]4CCOC4" 7R3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2cc(ccc2Cl)C3C(C(C(C(O3)CO)O)O)O)OC4CCOC4" # _pdbx_chem_comp_identifier.comp_id 7R3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R},4~{R},5~{S},6~{R})-2-[4-chloranyl-3-[[4-[(3~{S})-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 7R3 _pdbx_chem_comp_synonyms.name Empagliflozin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7R3 "Create component" 2021-10-14 PDBJ 7R3 "Initial release" 2021-10-27 RCSB ##