data_7VM # _chem_comp.id 7VM _chem_comp.name "N-methyl-N-[(2-{1-[2-(methylamino)ethyl]piperidin-4-yl}pyridin-4-yl)methyl]-3-phenoxybenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-12-08 _chem_comp.pdbx_modified_date 2016-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7VM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5U4X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7VM C4 C1 C 0 1 N N N 8.722 29.921 20.613 -4.762 0.215 -1.634 C4 7VM 1 7VM C5 C2 C 0 1 N N N 8.410 29.251 21.945 -3.302 -0.029 -2.023 C5 7VM 2 7VM C6 C3 C 0 1 Y N N 7.563 28.022 21.709 -2.493 1.213 -1.749 C6 7VM 3 7VM N1 N1 N 0 1 N N N 10.919 30.697 21.472 -4.998 -2.150 -1.043 N1 7VM 4 7VM C7 C4 C 0 1 Y N N 5.542 26.978 21.952 -1.579 3.179 -2.527 C7 7VM 5 7VM C8 C5 C 0 1 Y N N 5.975 25.856 21.265 -1.038 3.464 -1.288 C8 7VM 6 7VM N2 N2 N 0 1 Y N N 6.311 28.056 22.186 -2.280 2.079 -2.720 N2 7VM 7 7VM C9 C6 C 0 1 Y N N 7.270 25.826 20.766 -1.245 2.579 -0.241 C9 7VM 8 7VM C10 C7 C 0 1 N N N 7.843 24.648 20.007 -0.678 2.856 1.128 C10 7VM 9 7VM C11 C8 C 0 1 N N N 5.993 24.141 18.455 1.837 3.057 0.850 C11 7VM 10 7VM C12 C9 C 0 1 N N N 6.810 22.378 19.918 0.811 1.005 1.670 C12 7VM 11 7VM N3 N3 N 0 1 N N N 6.852 23.666 19.530 0.661 2.269 1.229 N3 7VM 12 7VM C13 C10 C 0 1 Y N N 7.669 21.956 21.063 2.166 0.448 1.871 C13 7VM 13 7VM C14 C11 C 0 1 Y N N 8.645 20.984 20.884 2.440 -0.340 2.990 C14 7VM 14 7VM C15 C12 C 0 1 Y N N 9.412 20.562 21.953 3.705 -0.859 3.175 C15 7VM 15 7VM O1 O1 O 0 1 N N N 6.152 21.535 19.332 -0.167 0.322 1.903 O1 7VM 16 7VM C24 C13 C 0 1 Y N N 7.479 22.519 22.325 3.173 0.704 0.941 C24 7VM 17 7VM C17 C14 C 0 1 Y N N 8.265 22.101 23.390 4.440 0.179 1.136 C17 7VM 18 7VM O O2 O 0 1 N N N 8.127 22.647 24.679 5.424 0.426 0.233 O 7VM 19 7VM C18 C15 C 0 1 Y N N 7.148 23.614 24.916 5.846 -0.603 -0.549 C18 7VM 20 7VM C23 C16 C 0 1 Y N N 5.913 23.222 25.408 6.927 -0.430 -1.401 C23 7VM 21 7VM C22 C17 C 0 1 Y N N 4.936 24.177 25.632 7.354 -1.477 -2.194 C22 7VM 22 7VM C21 C18 C 0 1 Y N N 5.183 25.509 25.353 6.704 -2.697 -2.140 C21 7VM 23 7VM C20 C19 C 0 1 Y N N 6.412 25.889 24.853 5.626 -2.871 -1.292 C20 7VM 24 7VM C19 C20 C 0 1 Y N N 7.404 24.945 24.635 5.199 -1.829 -0.492 C19 7VM 25 7VM C16 C21 C 0 1 Y N N 9.231 21.116 23.210 4.705 -0.599 2.256 C16 7VM 26 7VM C25 C22 C 0 1 Y N N 8.068 26.937 21.000 -1.988 1.433 -0.482 C25 7VM 27 7VM C3 C23 C 0 1 N N N 9.688 31.088 20.777 -5.566 -1.068 -1.857 C3 7VM 28 7VM C26 C24 C 0 1 N N N 9.706 28.912 22.678 -2.749 -1.192 -1.196 C26 7VM 29 7VM C27 C25 C 0 1 N N N 10.623 30.123 22.789 -3.611 -2.435 -1.431 C27 7VM 30 7VM C2 C26 C 0 1 N N N 11.854 29.913 20.654 -5.090 -1.836 0.389 C2 7VM 31 7VM C1 C27 C 0 1 N N N 13.127 30.668 20.388 -6.561 -1.791 0.808 C1 7VM 32 7VM N N4 N 0 1 N N N 14.163 29.844 19.710 -6.653 -1.477 2.240 N 7VM 33 7VM C C28 C 0 1 N N N 13.882 29.460 18.331 -8.054 -1.426 2.679 C 7VM 34 7VM H1 H1 H 0 1 N N N 7.785 30.294 20.174 -4.816 0.500 -0.583 H1 7VM 35 7VM H2 H2 H 0 1 N N N 9.173 29.178 19.938 -5.175 1.015 -2.250 H2 7VM 36 7VM H3 H3 H 0 1 N N N 7.837 29.958 22.563 -3.244 -0.276 -3.083 H3 7VM 37 7VM H5 H5 H 0 1 N N N 4.527 26.988 22.321 -1.426 3.866 -3.347 H5 7VM 38 7VM H6 H6 H 0 1 N N N 5.313 25.015 21.119 -0.464 4.366 -1.136 H6 7VM 39 7VM H7 H7 H 0 1 N N N 8.547 24.126 20.671 -0.615 3.933 1.284 H7 7VM 40 7VM H8 H8 H 0 1 N N N 8.384 25.038 19.132 -1.325 2.416 1.886 H8 7VM 41 7VM H9 H9 H 0 1 N N N 6.174 25.213 18.287 2.043 2.915 -0.211 H9 7VM 42 7VM H10 H10 H 0 1 N N N 6.216 23.583 17.534 1.645 4.113 1.045 H10 7VM 43 7VM H11 H11 H 0 1 N N N 4.940 23.986 18.732 2.697 2.730 1.434 H11 7VM 44 7VM H12 H12 H 0 1 N N N 8.805 20.556 19.905 1.662 -0.544 3.711 H12 7VM 45 7VM H13 H13 H 0 1 N N N 10.158 19.795 21.808 3.916 -1.469 4.041 H13 7VM 46 7VM H14 H14 H 0 1 N N N 6.724 23.277 22.473 2.966 1.309 0.071 H14 7VM 47 7VM H15 H15 H 0 1 N N N 5.715 22.181 25.615 7.435 0.522 -1.444 H15 7VM 48 7VM H16 H16 H 0 1 N N N 3.976 23.880 26.027 8.196 -1.344 -2.858 H16 7VM 49 7VM H17 H17 H 0 1 N N N 4.416 26.250 25.526 7.039 -3.514 -2.762 H17 7VM 50 7VM H18 H18 H 0 1 N N N 6.602 26.928 24.630 5.120 -3.825 -1.252 H18 7VM 51 7VM H19 H19 H 0 1 N N N 8.367 25.245 24.250 4.358 -1.966 0.171 H19 7VM 52 7VM H20 H20 H 0 1 N N N 9.834 20.786 24.043 5.693 -1.007 2.406 H20 7VM 53 7VM H21 H21 H 0 1 N N N 9.083 26.959 20.631 -2.170 0.723 0.311 H21 7VM 54 7VM H22 H22 H 0 1 N N N 9.951 31.472 19.780 -6.604 -0.901 -1.567 H22 7VM 55 7VM H23 H23 H 0 1 N N N 9.191 31.880 21.356 -5.523 -1.344 -2.910 H23 7VM 56 7VM H24 H24 H 0 1 N N N 9.461 28.556 23.690 -1.722 -1.399 -1.499 H24 7VM 57 7VM H25 H25 H 0 1 N N N 10.230 28.117 22.127 -2.771 -0.930 -0.138 H25 7VM 58 7VM H26 H26 H 0 1 N N N 11.566 29.815 23.264 -3.228 -3.261 -0.833 H26 7VM 59 7VM H27 H27 H 0 1 N N N 10.132 30.887 23.410 -3.578 -2.705 -2.487 H27 7VM 60 7VM H28 H28 H 0 1 N N N 11.374 29.674 19.694 -4.572 -2.604 0.963 H28 7VM 61 7VM H29 H29 H 0 1 N N N 12.097 28.981 21.185 -4.629 -0.867 0.579 H29 7VM 62 7VM H30 H30 H 0 1 N N N 13.533 31.020 21.348 -7.079 -1.024 0.234 H30 7VM 63 7VM H31 H31 H 0 1 N N N 12.894 31.533 19.749 -7.022 -2.761 0.618 H31 7VM 64 7VM H32 H32 H 0 1 N N N 14.282 29.005 20.242 -6.176 -0.614 2.452 H32 7VM 65 7VM H34 H34 H 0 1 N N N 14.715 28.857 17.941 -8.093 -1.192 3.743 H34 7VM 66 7VM H35 H35 H 0 1 N N N 12.955 28.869 18.297 -8.582 -0.656 2.118 H35 7VM 67 7VM H36 H36 H 0 1 N N N 13.764 30.364 17.716 -8.526 -2.393 2.502 H36 7VM 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7VM C N SING N N 1 7VM C11 N3 SING N N 2 7VM O1 C12 DOUB N N 3 7VM N3 C12 SING N N 4 7VM N3 C10 SING N N 5 7VM N C1 SING N N 6 7VM C12 C13 SING N N 7 7VM C10 C9 SING N N 8 7VM C1 C2 SING N N 9 7VM C4 C3 SING N N 10 7VM C4 C5 SING N N 11 7VM C2 N1 SING N N 12 7VM C9 C25 DOUB Y N 13 7VM C9 C8 SING Y N 14 7VM C3 N1 SING N N 15 7VM C14 C13 DOUB Y N 16 7VM C14 C15 SING Y N 17 7VM C25 C6 SING Y N 18 7VM C13 C24 SING Y N 19 7VM C8 C7 DOUB Y N 20 7VM N1 C27 SING N N 21 7VM C6 C5 SING N N 22 7VM C6 N2 DOUB Y N 23 7VM C5 C26 SING N N 24 7VM C7 N2 SING Y N 25 7VM C15 C16 DOUB Y N 26 7VM C24 C17 DOUB Y N 27 7VM C26 C27 SING N N 28 7VM C16 C17 SING Y N 29 7VM C17 O SING N N 30 7VM C19 C20 DOUB Y N 31 7VM C19 C18 SING Y N 32 7VM O C18 SING N N 33 7VM C20 C21 SING Y N 34 7VM C18 C23 DOUB Y N 35 7VM C21 C22 DOUB Y N 36 7VM C23 C22 SING Y N 37 7VM C4 H1 SING N N 38 7VM C4 H2 SING N N 39 7VM C5 H3 SING N N 40 7VM C7 H5 SING N N 41 7VM C8 H6 SING N N 42 7VM C10 H7 SING N N 43 7VM C10 H8 SING N N 44 7VM C11 H9 SING N N 45 7VM C11 H10 SING N N 46 7VM C11 H11 SING N N 47 7VM C14 H12 SING N N 48 7VM C15 H13 SING N N 49 7VM C24 H14 SING N N 50 7VM C23 H15 SING N N 51 7VM C22 H16 SING N N 52 7VM C21 H17 SING N N 53 7VM C20 H18 SING N N 54 7VM C19 H19 SING N N 55 7VM C16 H20 SING N N 56 7VM C25 H21 SING N N 57 7VM C3 H22 SING N N 58 7VM C3 H23 SING N N 59 7VM C26 H24 SING N N 60 7VM C26 H25 SING N N 61 7VM C27 H26 SING N N 62 7VM C27 H27 SING N N 63 7VM C2 H28 SING N N 64 7VM C2 H29 SING N N 65 7VM C1 H30 SING N N 66 7VM C1 H31 SING N N 67 7VM N H32 SING N N 68 7VM C H34 SING N N 69 7VM C H35 SING N N 70 7VM C H36 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7VM SMILES ACDLabs 12.01 "C1CN(CCC1c2nccc(c2)CN(C)C(c4cc(Oc3ccccc3)ccc4)=O)CCNC" 7VM InChI InChI 1.03 "InChI=1S/C28H34N4O2/c1-29-15-18-32-16-12-23(13-17-32)27-19-22(11-14-30-27)21-31(2)28(33)24-7-6-10-26(20-24)34-25-8-4-3-5-9-25/h3-11,14,19-20,23,29H,12-13,15-18,21H2,1-2H3" 7VM InChIKey InChI 1.03 VUIITYLFSAXKIQ-UHFFFAOYSA-N 7VM SMILES_CANONICAL CACTVS 3.385 "CNCCN1CCC(CC1)c2cc(CN(C)C(=O)c3cccc(Oc4ccccc4)c3)ccn2" 7VM SMILES CACTVS 3.385 "CNCCN1CCC(CC1)c2cc(CN(C)C(=O)c3cccc(Oc4ccccc4)c3)ccn2" 7VM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CNCCN1CCC(CC1)c2cc(ccn2)CN(C)C(=O)c3cccc(c3)Oc4ccccc4" 7VM SMILES "OpenEye OEToolkits" 2.0.6 "CNCCN1CCC(CC1)c2cc(ccn2)CN(C)C(=O)c3cccc(c3)Oc4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7VM "SYSTEMATIC NAME" ACDLabs 12.01 "N-methyl-N-[(2-{1-[2-(methylamino)ethyl]piperidin-4-yl}pyridin-4-yl)methyl]-3-phenoxybenzamide" 7VM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-methyl-~{N}-[[2-[1-[2-(methylamino)ethyl]piperidin-4-yl]pyridin-4-yl]methyl]-3-phenoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7VM "Create component" 2016-12-08 RCSB 7VM "Initial release" 2016-12-21 RCSB #