data_86N # _chem_comp.id 86N _chem_comp.name "(2S)-5-[[5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)furan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C15 H17 N6 O10 P" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-04 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.303 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 86N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PPO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 86N C2 C1 C 0 1 Y N N 152.163 133.965 132.328 4.928 -3.045 1.258 C2 86N 1 86N C4 C2 C 0 1 Y N N 151.203 133.347 130.408 5.124 -1.086 0.072 C4 86N 2 86N C5 C3 C 0 1 Y N N 152.429 133.535 129.696 6.357 -1.531 -0.438 C5 86N 3 86N C6 C4 C 0 1 Y N N 153.554 133.969 130.438 6.821 -2.796 -0.039 C6 86N 4 86N N N1 N 0 1 N N N 145.407 129.146 121.410 -7.515 -0.672 -2.366 N 86N 5 86N CA C5 C 0 1 N N S 145.964 128.033 122.101 -7.334 -1.492 -1.160 CA 86N 6 86N C C6 C 0 1 N N N 144.820 127.538 122.959 -8.676 -1.751 -0.523 C 86N 7 86N OXT O1 O 0 1 N Y N 144.708 126.271 123.166 -8.827 -2.776 0.330 OXT 86N 8 86N CB C7 C 0 1 N N N 147.289 128.358 122.785 -6.435 -0.750 -0.169 CB 86N 9 86N CG C8 C 0 1 N N N 148.414 128.198 123.786 -5.035 -0.597 -0.768 CG 86N 10 86N CD C9 C 0 1 N N N 148.699 128.868 125.088 -4.149 0.134 0.208 CD 86N 11 86N OE1 O2 O 0 1 N N N 148.096 128.392 126.067 -2.868 0.383 -0.106 OE1 86N 12 86N OE2 O3 O 0 1 N N N 149.477 129.794 125.009 -4.591 0.495 1.273 OE2 86N 13 86N "C1'" C10 C 0 1 Y N N 148.896 132.605 129.687 3.809 0.984 -0.253 "C1'" 86N 14 86N "C2'" C11 C 0 1 Y N N 147.720 133.310 129.749 3.611 2.207 -0.800 "C2'" 86N 15 86N "C3'" C12 C 0 1 Y N N 146.680 132.326 129.949 2.375 2.685 -0.297 "C3'" 86N 16 86N "C4'" C13 C 0 1 Y N N 147.293 131.091 129.994 1.891 1.730 0.523 "C4'" 86N 17 86N "C5'" C14 C 0 1 N N N 146.767 129.678 130.153 0.593 1.800 1.286 "C5'" 86N 18 86N C8 C15 C 0 1 Y N N 150.933 132.877 128.253 5.983 0.433 -1.279 C8 86N 19 86N N1 N2 N 0 1 Y N N 153.393 134.177 131.777 6.078 -3.507 0.803 N1 86N 20 86N N3 N3 N 0 1 Y N N 151.032 133.555 131.730 4.451 -1.869 0.909 N3 86N 21 86N N6 N4 N 0 1 N N N 154.820 134.192 129.906 8.027 -3.288 -0.507 N6 86N 22 86N N7 N5 N 0 1 Y N N 152.216 133.225 128.346 6.827 -0.558 -1.254 N7 86N 23 86N N9 N6 N 0 1 Y N N 150.243 132.944 129.483 4.915 0.156 -0.477 N9 86N 24 86N "O2'" O4 O 0 1 N N N 147.617 134.646 129.649 4.441 2.855 -1.665 "O2'" 86N 25 86N O2P O5 O 0 1 N N N 147.579 130.734 127.142 -2.042 0.443 2.279 O2P 86N 26 86N "O3'" O6 O 0 1 N N N 145.360 132.557 130.078 1.788 3.879 -0.587 "O3'" 86N 27 86N O3P O7 O 0 1 N N N 149.550 129.023 128.512 -2.572 2.655 1.184 O3P 86N 28 86N "O4'" O8 O 0 1 Y N N 148.631 131.266 129.825 2.763 0.703 0.546 "O4'" 86N 29 86N "O5'" O9 O 0 1 N N N 146.701 128.983 128.948 -0.459 1.254 0.488 "O5'" 86N 30 86N P P1 P 0 1 N N N 147.972 129.202 127.743 -1.986 1.168 0.990 P 86N 31 86N H1 H1 H 0 1 N N N 152.088 134.152 133.389 4.355 -3.656 1.940 H1 86N 32 86N H2 H2 H 0 1 N Y N 144.544 128.876 120.983 -8.052 -1.167 -3.062 H2 86N 33 86N H H3 H 0 1 N N N 145.240 129.890 122.057 -7.943 0.213 -2.140 H 86N 34 86N HA H5 H 0 1 N N N 146.174 127.245 121.363 -6.872 -2.440 -1.431 HA 86N 35 86N HXT H8 H 0 1 N Y N 144.065 125.908 122.568 -9.706 -2.903 0.713 HXT 86N 36 86N HB2 H9 H 0 1 N N N 147.914 128.312 121.881 -6.853 0.236 0.034 HB2 86N 37 86N HB3 H10 H 0 1 N N N 147.059 129.408 123.018 -6.373 -1.317 0.760 HB3 86N 38 86N HG2 H11 H 0 1 N N N 148.375 127.131 124.049 -4.617 -1.583 -0.971 HG2 86N 39 86N HG3 H12 H 0 1 N N N 149.318 128.396 123.191 -5.097 -0.030 -1.697 HG3 86N 40 86N H13 H13 H 0 1 N N N 145.757 129.727 130.585 0.683 1.227 2.209 H13 86N 41 86N H14 H14 H 0 1 N N N 147.433 129.131 130.837 0.367 2.839 1.524 H14 86N 42 86N H15 H15 H 0 1 N N N 150.467 132.573 127.327 6.109 1.341 -1.851 H15 86N 43 86N H16 H16 H 0 1 N N N 155.441 134.485 130.633 8.562 -2.758 -1.118 H16 86N 44 86N H17 H17 H 0 1 N N N 155.163 133.347 129.496 8.337 -4.162 -0.224 H17 86N 45 86N H18 H18 H 0 1 N N N 146.704 134.900 129.721 4.260 2.669 -2.597 H18 86N 46 86N H19 H19 H 0 1 N N N 144.904 131.732 130.199 1.197 3.852 -1.352 H19 86N 47 86N H20 H20 H 0 1 N N N 150.009 129.855 128.492 -2.566 3.189 0.378 H20 86N 48 86N O O O 0 1 N N N ? ? ? -9.615 -1.036 -0.781 O 86N 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 86N N CA SING N N 1 86N CA CB SING N N 2 86N CA C SING N N 3 86N CB CG SING N N 4 86N C OXT SING N N 5 86N CG CD SING N N 6 86N OE2 CD DOUB N N 7 86N CD OE1 SING N N 8 86N OE1 P SING N N 9 86N O2P P DOUB N N 10 86N P O3P SING N N 11 86N P "O5'" SING N N 12 86N C8 N7 DOUB Y N 13 86N C8 N9 SING Y N 14 86N N7 C5 SING Y N 15 86N "O5'" "C5'" SING N N 16 86N N9 "C1'" SING N N 17 86N N9 C4 SING Y N 18 86N "O2'" "C2'" SING N N 19 86N "C1'" "C2'" DOUB Y N 20 86N "C1'" "O4'" SING Y N 21 86N C5 C4 DOUB Y N 22 86N C5 C6 SING Y N 23 86N "C2'" "C3'" SING Y N 24 86N "O4'" "C4'" SING Y N 25 86N N6 C6 SING N N 26 86N "C3'" "C4'" DOUB Y N 27 86N "C3'" "O3'" SING N N 28 86N "C4'" "C5'" SING N N 29 86N C4 N3 SING Y N 30 86N C6 N1 DOUB Y N 31 86N N3 C2 DOUB Y N 32 86N N1 C2 SING Y N 33 86N C2 H1 SING N N 34 86N N H2 SING N N 35 86N N H SING N N 36 86N CA HA SING N N 37 86N OXT HXT SING N N 38 86N CB HB2 SING N N 39 86N CB HB3 SING N N 40 86N CG HG2 SING N N 41 86N CG HG3 SING N N 42 86N "C5'" H13 SING N N 43 86N "C5'" H14 SING N N 44 86N C8 H15 SING N N 45 86N N6 H16 SING N N 46 86N N6 H17 SING N N 47 86N "O2'" H18 SING N N 48 86N "O3'" H19 SING N N 49 86N O3P H20 SING N N 50 86N C O DOUB N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 86N InChI InChI 1.06 "InChI=1S/C15H17N6O10P/c16-6(15(25)26)1-2-8(22)31-32(27,28)29-3-7-10(23)11(24)14(30-7)21-5-20-9-12(17)18-4-19-13(9)21/h4-6,23-24H,1-3,16H2,(H,25,26)(H,27,28)(H2,17,18,19)/t6-/m0/s1" 86N InChIKey InChI 1.06 GJGJYVIFESYGRN-LURJTMIESA-N 86N SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)O[P](O)(=O)OCc1oc(n2cnc3c(N)ncnc23)c(O)c1O)C(O)=O" 86N SMILES CACTVS 3.385 "N[CH](CCC(=O)O[P](O)(=O)OCc1oc(n2cnc3c(N)ncnc23)c(O)c1O)C(O)=O" 86N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)c3c(c(c(o3)COP(=O)(O)OC(=O)CC[C@@H](C(=O)O)N)O)O)N" 86N SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)c3c(c(c(o3)COP(=O)(O)OC(=O)CCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id 86N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-[[5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)furan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 86N "Create component" 2021-10-04 PDBE 86N "Modify linking type" 2021-10-12 PDBE 86N "Initial release" 2021-10-27 RCSB 86N "Modify descriptor" 2022-08-22 RCSB #