data_8EK # _chem_comp.id 8EK _chem_comp.name "2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H13 N3 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-09 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.444 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8EK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PWY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8EK C10 C1 C 0 1 Y N N 4.253 28.841 59.698 3.183 -0.757 2.119 C10 8EK 1 8EK C11 C2 C 0 1 Y N N 4.540 27.502 59.235 4.545 -0.850 2.340 C11 8EK 2 8EK C12 C3 C 0 1 Y N N 4.323 27.158 57.866 5.429 -0.663 1.295 C12 8EK 3 8EK C13 C4 C 0 1 Y N N 3.812 28.128 56.918 4.952 -0.384 0.027 C13 8EK 4 8EK C14 C5 C 0 1 Y N N 3.542 29.443 57.428 3.591 -0.293 -0.194 C14 8EK 5 8EK C15 C6 C 0 1 N N N 3.135 29.189 54.618 6.284 1.284 -1.197 C15 8EK 6 8EK O17 O1 O 0 1 N N N 4.034 29.920 54.151 5.811 2.073 -0.413 O17 8EK 7 8EK C18 C7 C 0 1 N N N 10.604 31.278 61.018 -5.135 -0.650 -0.566 C18 8EK 8 8EK C01 C8 C 0 1 N N N 9.109 31.380 61.006 -3.756 -0.994 -0.394 C01 8EK 9 8EK C02 C9 C 0 1 N N N 8.449 32.661 60.421 -3.309 -2.324 -0.595 C02 8EK 10 8EK C04 C10 C 0 1 N N N 6.213 31.641 60.956 -1.129 -1.614 -0.059 C04 8EK 11 8EK C06 C11 C 0 1 N N N 8.267 30.351 61.504 -2.806 -0.017 -0.026 C06 8EK 12 8EK C08 C12 C 0 1 N N N 3.420 31.322 59.259 1.222 -0.385 0.609 C08 8EK 13 8EK C09 C13 C 0 1 Y N N 3.751 29.841 58.816 2.706 -0.485 0.851 C09 8EK 14 8EK C21 C14 C 0 1 Y N N 8.869 28.983 62.138 -3.220 1.375 0.189 C21 8EK 15 8EK C22 C15 C 0 1 Y N N 10.029 28.598 62.818 -2.393 2.402 0.545 C22 8EK 16 8EK C23 C16 C 0 1 Y N N 10.115 27.145 63.199 -3.046 3.606 0.679 C23 8EK 17 8EK C24 C17 C 0 1 Y N N 9.031 26.434 62.808 -4.362 3.566 0.440 C24 8EK 18 8EK C26 C18 C 0 1 N N N 3.549 27.825 55.388 5.917 -0.175 -1.112 C26 8EK 19 8EK N03 N1 N 0 1 N N N 6.965 32.723 60.429 -1.999 -2.599 -0.421 N03 8EK 20 8EK N05 N2 N 0 1 N N N 6.795 30.531 61.455 -1.524 -0.371 0.127 N05 8EK 21 8EK N19 N3 N 0 1 N N N 11.770 31.192 61.030 -6.229 -0.376 -0.703 N19 8EK 22 8EK O16 O2 O 0 1 N N N 1.923 29.429 54.552 7.137 1.707 -2.143 O16 8EK 23 8EK O20 O3 O 0 1 N N N 9.078 33.611 59.961 -4.091 -3.202 -0.918 O20 8EK 24 8EK S07 S1 S 0 1 N N N 4.249 31.796 60.934 0.573 -2.013 0.159 S07 8EK 25 8EK S25 S2 S 0 1 Y N N 7.935 27.496 62.004 -4.859 1.989 0.019 S25 8EK 26 8EK H1 H1 H 0 1 N N N 4.423 29.089 60.735 2.492 -0.902 2.936 H1 8EK 27 8EK H2 H2 H 0 1 N N N 4.919 26.762 59.924 4.917 -1.067 3.331 H2 8EK 28 8EK H3 H3 H 0 1 N N N 4.544 26.155 57.531 6.493 -0.735 1.468 H3 8EK 29 8EK H4 H4 H 0 1 N N N 3.160 30.184 56.741 3.219 -0.075 -1.184 H4 8EK 30 8EK H5 H5 H 0 1 N N N 3.779 32.011 58.481 0.729 -0.035 1.516 H5 8EK 31 8EK H6 H6 H 0 1 N N N 2.330 31.423 59.364 1.033 0.319 -0.201 H6 8EK 32 8EK H7 H7 H 0 1 N N N 10.814 29.300 63.055 -1.332 2.281 0.707 H7 8EK 33 8EK H8 H8 H 0 1 N N N 10.952 26.715 63.728 -2.535 4.515 0.956 H8 8EK 34 8EK H9 H9 H 0 1 N N N 8.878 25.378 62.972 -5.020 4.420 0.500 H9 8EK 35 8EK H10 H10 H 0 1 N N N 2.733 27.093 55.296 6.816 -0.767 -0.940 H10 8EK 36 8EK H11 H11 H 0 1 N N N 4.463 27.414 54.935 5.450 -0.488 -2.046 H11 8EK 37 8EK H12 H12 H 0 1 N N N 6.496 33.527 60.063 -1.675 -3.504 -0.554 H12 8EK 38 8EK H13 H13 H 0 1 N N N 1.787 30.250 54.094 7.342 2.652 -2.159 H13 8EK 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8EK O17 C15 DOUB N N 1 8EK O16 C15 SING N N 2 8EK C15 C26 SING N N 3 8EK C26 C13 SING N N 4 8EK C13 C14 DOUB Y N 5 8EK C13 C12 SING Y N 6 8EK C14 C09 SING Y N 7 8EK C12 C11 DOUB Y N 8 8EK C09 C08 SING N N 9 8EK C09 C10 DOUB Y N 10 8EK C11 C10 SING Y N 11 8EK C08 S07 SING N N 12 8EK O20 C02 DOUB N N 13 8EK C02 N03 SING N N 14 8EK C02 C01 SING N N 15 8EK N03 C04 SING N N 16 8EK S07 C04 SING N N 17 8EK C04 N05 DOUB N N 18 8EK C01 C18 SING N N 19 8EK C01 C06 DOUB N N 20 8EK C18 N19 TRIP N N 21 8EK N05 C06 SING N N 22 8EK C06 C21 SING N N 23 8EK S25 C21 SING Y N 24 8EK S25 C24 SING Y N 25 8EK C21 C22 DOUB Y N 26 8EK C24 C23 DOUB Y N 27 8EK C22 C23 SING Y N 28 8EK C10 H1 SING N N 29 8EK C11 H2 SING N N 30 8EK C12 H3 SING N N 31 8EK C14 H4 SING N N 32 8EK C08 H5 SING N N 33 8EK C08 H6 SING N N 34 8EK C22 H7 SING N N 35 8EK C23 H8 SING N N 36 8EK C24 H9 SING N N 37 8EK C26 H10 SING N N 38 8EK C26 H11 SING N N 39 8EK N03 H12 SING N N 40 8EK O16 H13 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8EK InChI InChI 1.06 "InChI=1S/C18H13N3O3S2/c19-9-13-16(14-5-2-6-25-14)20-18(21-17(13)24)26-10-12-4-1-3-11(7-12)8-15(22)23/h1-7H,8,10H2,(H,22,23)(H,20,21,24)" 8EK InChIKey InChI 1.06 RJQYGCGMQYVVIB-UHFFFAOYSA-N 8EK SMILES_CANONICAL CACTVS 3.385 "OC(=O)Cc1cccc(CSC2=NC(=C(C#N)C(=O)N2)c3sccc3)c1" 8EK SMILES CACTVS 3.385 "OC(=O)Cc1cccc(CSC2=NC(=C(C#N)C(=O)N2)c3sccc3)c1" 8EK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSC2=NC(=C(C(=O)N2)C#N)c3cccs3)CC(=O)O" 8EK SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSC2=NC(=C(C(=O)N2)C#N)c3cccs3)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id 8EK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1~{H}-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8EK "Create component" 2021-10-09 PDBE 8EK "Initial release" 2022-04-20 RCSB 8EK "Modify descriptor" 2022-08-22 RCSB #