data_8LE # _chem_comp.id 8LE _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-methyl-2-oxidanyl-propanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-02-09 _chem_comp.pdbx_modified_date 2019-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8LE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5N43 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8LE C2 C1 C 0 1 Y N N -13.618 -40.207 12.730 6.436 0.769 -1.537 C2 8LE 1 8LE CAA C2 C 0 1 N N N -20.747 -39.334 5.235 -5.660 3.263 -0.231 CAA 8LE 2 8LE CAZ C3 C 0 1 N N N -19.660 -39.163 6.312 -6.107 1.884 -0.720 CAZ 8LE 3 8LE CAB C4 C 0 1 N N N -19.567 -40.434 7.177 -7.610 1.720 -0.483 CAB 8LE 4 8LE OAF O1 O 0 1 N N N -20.023 -38.090 7.170 -5.829 1.760 -2.117 OAF 8LE 5 8LE CAS C5 C 0 1 N N N -18.301 -38.834 5.642 -5.360 0.816 0.037 CAS 8LE 6 8LE OAD O2 O 0 1 N N N -17.678 -37.820 5.948 -5.856 0.310 1.016 OAD 8LE 7 8LE OAQ O3 O 0 1 N N N -17.880 -39.720 4.692 -4.144 0.426 -0.377 OAQ 8LE 8 8LE PBC P1 P 0 1 N N N -16.677 -39.481 3.596 -3.411 -0.719 0.485 PBC 8LE 9 8LE OAI O4 O 0 1 N N N -16.857 -38.043 2.935 -4.249 -2.090 0.378 OAI 8LE 10 8LE OAE O5 O 0 1 N N N -16.661 -40.594 2.619 -3.335 -0.298 1.902 OAE 8LE 11 8LE "O5'" O6 O 0 1 N N N -15.336 -39.476 4.426 -1.925 -0.953 -0.086 "O5'" 8LE 12 8LE "C5'" C6 C 0 1 N N N -15.118 -40.613 5.251 -0.983 -1.833 0.531 "C5'" 8LE 13 8LE "C4'" C7 C 0 1 N N R -13.883 -40.386 6.080 0.324 -1.819 -0.264 "C4'" 8LE 14 8LE "O4'" O7 O 0 1 N N N -14.154 -39.315 7.018 0.992 -0.548 -0.112 "O4'" 8LE 15 8LE "C3'" C8 C 0 1 N N S -13.703 -41.605 6.896 1.314 -2.856 0.311 "C3'" 8LE 16 8LE "O3'" O8 O 0 1 N N N -12.900 -42.541 6.169 1.281 -4.060 -0.458 "O3'" 8LE 17 8LE "C2'" C9 C 0 1 N N R -12.983 -41.044 8.123 2.693 -2.170 0.183 "C2'" 8LE 18 8LE "O2'" O9 O 0 1 N N N -11.569 -40.778 7.879 3.553 -2.930 -0.668 "O2'" 8LE 19 8LE "C1'" C10 C 0 1 N N R -13.704 -39.731 8.326 2.373 -0.800 -0.454 "C1'" 8LE 20 8LE N9 N1 N 0 1 Y N N -14.842 -39.862 9.291 3.236 0.240 0.112 N9 8LE 21 8LE C8 C11 C 0 1 Y N N -16.155 -39.876 9.035 2.952 1.026 1.188 C8 8LE 22 8LE N7 N2 N 0 1 Y N N -16.799 -40.012 10.189 3.941 1.841 1.417 N7 8LE 23 8LE C5 C12 C 0 1 Y N N -15.892 -40.101 11.168 4.920 1.629 0.505 C5 8LE 24 8LE C4 C13 C 0 1 Y N N -14.674 -40.010 10.603 4.479 0.599 -0.344 C4 8LE 25 8LE N3 N3 N 0 1 Y N N -13.544 -40.041 11.348 5.261 0.209 -1.345 N3 8LE 26 8LE N1 N4 N 0 1 Y N N -14.895 -40.299 13.290 6.897 1.733 -0.760 N1 8LE 27 8LE C6 C14 C 0 1 Y N N -15.987 -40.224 12.506 6.185 2.193 0.263 C6 8LE 28 8LE N6 N5 N 0 1 N N N -17.198 -40.294 13.044 6.671 3.210 1.065 N6 8LE 29 8LE H1 H1 H 0 1 N N N -12.729 -40.262 13.340 7.048 0.426 -2.358 H1 8LE 30 8LE H2 H2 H 0 1 N N N -21.708 -39.567 5.717 -6.201 4.035 -0.779 H2 8LE 31 8LE H3 H3 H 0 1 N N N -20.842 -38.402 4.659 -5.872 3.357 0.834 H3 8LE 32 8LE H4 H4 H 0 1 N N N -20.467 -40.155 4.559 -4.590 3.379 -0.400 H4 8LE 33 8LE H5 H5 H 0 1 N N N -18.788 -40.301 7.942 -8.150 2.493 -1.031 H5 8LE 34 8LE H6 H6 H 0 1 N N N -20.535 -40.616 7.667 -7.928 0.738 -0.832 H6 8LE 35 8LE H7 H7 H 0 1 N N N -19.312 -41.293 6.540 -7.822 1.814 0.582 H7 8LE 36 8LE H8 H8 H 0 1 N N N -19.338 -37.431 7.161 -6.087 0.909 -2.495 H8 8LE 37 8LE H9 H9 H 0 1 N N N -16.927 -38.134 1.992 -4.340 -2.426 -0.524 H9 8LE 38 8LE H10 H10 H 0 1 N N N -15.984 -40.760 5.912 -0.791 -1.501 1.551 H10 8LE 39 8LE H11 H11 H 0 1 N N N -14.981 -41.505 4.622 -1.388 -2.845 0.547 H11 8LE 40 8LE H12 H12 H 0 1 N N N -13.005 -40.180 5.450 0.130 -2.024 -1.317 H12 8LE 41 8LE H13 H13 H 0 1 N N N -14.673 -42.036 7.185 1.086 -3.063 1.356 H13 8LE 42 8LE H14 H14 H 0 1 N N N -12.781 -43.327 6.689 1.884 -4.747 -0.141 H14 8LE 43 8LE H15 H15 H 0 1 N N N -13.126 -41.706 8.990 3.146 -2.038 1.166 H15 8LE 44 8LE H16 H16 H 0 1 N N N -11.170 -40.433 8.669 3.739 -3.822 -0.345 H16 8LE 45 8LE H17 H17 H 0 1 N N N -12.988 -38.994 8.720 2.494 -0.847 -1.536 H17 8LE 46 8LE H18 H18 H 0 1 N N N -16.612 -39.791 8.060 2.041 0.981 1.766 H18 8LE 47 8LE H19 H19 H 0 1 N N N -17.117 -40.401 14.035 6.138 3.542 1.804 H19 8LE 48 8LE H20 H20 H 0 1 N N N -17.702 -39.455 12.839 7.546 3.591 0.888 H20 8LE 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8LE OAE PBC DOUB N N 1 8LE OAI PBC SING N N 2 8LE PBC "O5'" SING N N 3 8LE PBC OAQ SING N N 4 8LE "O5'" "C5'" SING N N 5 8LE OAQ CAS SING N N 6 8LE CAA CAZ SING N N 7 8LE "C5'" "C4'" SING N N 8 8LE CAS OAD DOUB N N 9 8LE CAS CAZ SING N N 10 8LE "C4'" "C3'" SING N N 11 8LE "C4'" "O4'" SING N N 12 8LE "O3'" "C3'" SING N N 13 8LE CAZ OAF SING N N 14 8LE CAZ CAB SING N N 15 8LE "C3'" "C2'" SING N N 16 8LE "O4'" "C1'" SING N N 17 8LE "O2'" "C2'" SING N N 18 8LE "C2'" "C1'" SING N N 19 8LE "C1'" N9 SING N N 20 8LE C8 N9 SING Y N 21 8LE C8 N7 DOUB Y N 22 8LE N9 C4 SING Y N 23 8LE N7 C5 SING Y N 24 8LE C4 C5 DOUB Y N 25 8LE C4 N3 SING Y N 26 8LE C5 C6 SING Y N 27 8LE N3 C2 DOUB Y N 28 8LE C6 N6 SING N N 29 8LE C6 N1 DOUB Y N 30 8LE C2 N1 SING Y N 31 8LE C2 H1 SING N N 32 8LE CAA H2 SING N N 33 8LE CAA H3 SING N N 34 8LE CAA H4 SING N N 35 8LE CAB H5 SING N N 36 8LE CAB H6 SING N N 37 8LE CAB H7 SING N N 38 8LE OAF H8 SING N N 39 8LE OAI H9 SING N N 40 8LE "C5'" H10 SING N N 41 8LE "C5'" H11 SING N N 42 8LE "C4'" H12 SING N N 43 8LE "C3'" H13 SING N N 44 8LE "O3'" H14 SING N N 45 8LE "C2'" H15 SING N N 46 8LE "O2'" H16 SING N N 47 8LE "C1'" H17 SING N N 48 8LE C8 H18 SING N N 49 8LE N6 H19 SING N N 50 8LE N6 H20 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8LE InChI InChI 1.03 "InChI=1S/C14H20N5O9P/c1-14(2,23)13(22)28-29(24,25)26-3-6-8(20)9(21)12(27-6)19-5-18-7-10(15)16-4-17-11(7)19/h4-6,8-9,12,20-21,23H,3H2,1-2H3,(H,24,25)(H2,15,16,17)/t6-,8-,9-,12-/m1/s1" 8LE InChIKey InChI 1.03 WJCYMTFWIDDQPQ-WOUKDFQISA-N 8LE SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 8LE SMILES CACTVS 3.385 "CC(C)(O)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 8LE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O" 8LE SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O" # _pdbx_chem_comp_identifier.comp_id 8LE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-methyl-2-oxidanyl-propanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8LE "Create component" 2017-02-09 EBI 8LE "Initial release" 2019-08-28 RCSB ##