data_8LH # _chem_comp.id 8LH _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{R})-2-methyl-3-oxidanyl-propanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-02-09 _chem_comp.pdbx_modified_date 2023-09-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.310 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8LH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5N44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8LH C1 C4 C 0 1 Y N N -14.664 -39.965 10.562 4.533 0.696 -0.337 C1 8LH 1 8LH C2 C5 C 0 1 Y N N -15.887 -40.015 11.116 4.925 1.743 0.514 C2 8LH 2 8LH C3 C6 C 0 1 Y N N -15.992 -40.118 12.467 6.167 2.359 0.280 C3 8LH 3 8LH C4 C8 C 0 1 Y N N -16.113 -39.808 8.965 2.975 1.067 1.179 C4 8LH 4 8LH N1 N1 N 0 1 Y N N -14.912 -40.241 13.251 6.909 1.922 -0.732 N1 8LH 5 8LH N2 N3 N 0 1 Y N N -13.546 -40.004 11.322 5.344 0.328 -1.323 N2 8LH 6 8LH O1 OAE O 0 1 N N N -20.142 -38.146 7.093 -8.228 2.716 -0.974 O1 8LH 7 8LH C5 CAK C 0 1 N N N -20.085 -39.544 6.920 -7.449 1.816 -0.183 C5 8LH 8 8LH C6 CAZ C 0 1 N N R -19.697 -39.807 5.456 -6.084 1.609 -0.841 C6 8LH 9 8LH C7 CAA C 0 1 N N N -20.754 -39.263 4.477 -5.309 2.928 -0.835 C7 8LH 10 8LH C8 CAS C 0 1 N N N -18.298 -39.230 5.127 -5.310 0.567 -0.075 C8 8LH 11 8LH O2 OAC O 0 1 N N N -17.782 -38.338 5.805 -5.800 0.044 0.898 O2 8LH 12 8LH O3 OAQ O 0 1 N N N -17.702 -39.812 4.047 -4.076 0.220 -0.473 O3 8LH 13 8LH P1 PBC P 0 1 N N N -16.382 -39.238 3.389 -3.314 -0.900 0.398 P1 8LH 14 8LH O4 OAH O 0 1 N N N -16.759 -37.737 3.137 -4.102 -2.299 0.280 O4 8LH 15 8LH O5 OAD O 0 1 N N N -15.946 -39.979 2.202 -3.270 -0.476 1.815 O5 8LH 16 8LH O6 O5* O 0 1 N N N -15.239 -39.350 4.501 -1.813 -1.081 -0.155 O6 8LH 17 8LH C9 C5* C 0 1 N N N -15.014 -40.604 5.143 -0.849 -1.928 0.473 C9 8LH 18 8LH C10 C4* C 0 1 N N R -13.817 -40.442 6.042 0.466 -1.869 -0.306 C10 8LH 19 8LH O7 O4* O 0 1 N N N -14.081 -39.349 6.962 1.088 -0.575 -0.145 O7 8LH 20 8LH C11 C3* C 0 1 N N S -13.694 -41.649 6.886 1.485 -2.871 0.282 C11 8LH 21 8LH O8 O3* O 0 1 N N N -12.959 -42.677 6.194 1.503 -4.075 -0.488 O8 8LH 22 8LH C12 C2* C 0 1 N N R -12.916 -41.073 8.095 2.840 -2.138 0.172 C12 8LH 23 8LH O9 O2* O 0 1 N N N -11.479 -40.830 7.784 3.737 -2.866 -0.669 O9 8LH 24 8LH C13 C1* C 0 1 N N R -13.626 -39.746 8.284 2.480 -0.779 -0.469 C13 8LH 25 8LH N3 N9 N 0 1 Y N N -14.805 -39.835 9.240 3.300 0.290 0.107 N3 8LH 26 8LH N4 N7 N 0 1 Y N N -16.775 -39.904 10.117 3.932 1.915 1.419 N4 8LH 27 8LH C14 C2 C 0 1 Y N N -13.634 -40.170 12.695 6.498 0.934 -1.505 C14 8LH 28 8LH N5 N6 N 0 1 N N N -17.196 -40.111 13.027 6.605 3.396 1.085 N5 8LH 29 8LH H1 H1 H 0 1 N N N -16.555 -39.723 7.983 2.058 0.989 1.745 H1 8LH 30 8LH H2 H2 H 0 1 N N N -19.366 -37.748 6.716 -9.108 2.894 -0.616 H2 8LH 31 8LH H3 H3 H 0 1 N N N -21.067 -39.990 7.135 -7.312 2.234 0.814 H3 8LH 32 8LH H4 H4 H 0 1 N N N -19.330 -39.976 7.593 -7.965 0.859 -0.108 H4 8LH 33 8LH H5 H5 H 0 1 N N N -19.645 -40.897 5.317 -6.223 1.274 -1.869 H5 8LH 34 8LH H6 H6 H 0 1 N N N -21.738 -39.685 4.728 -4.336 2.780 -1.304 H6 8LH 35 8LH H7 H7 H 0 1 N N N -20.795 -38.166 4.554 -5.869 3.681 -1.389 H7 8LH 36 8LH H8 H8 H 0 1 N N N -20.484 -39.549 3.450 -5.169 3.262 0.194 H8 8LH 37 8LH H9 H9 H 0 1 N N N -16.642 -37.531 2.217 -4.170 -2.637 -0.623 H9 8LH 38 8LH H10 H10 H 0 1 N N N -15.896 -40.885 5.738 -0.682 -1.591 1.496 H10 8LH 39 8LH H11 H11 H 0 1 N N N -14.816 -41.381 4.390 -1.219 -2.953 0.485 H11 8LH 40 8LH H12 H12 H 0 1 N N N -12.904 -40.269 5.454 0.292 -2.080 -1.361 H12 8LH 41 8LH H13 H13 H 0 1 N N N -14.683 -42.006 7.210 1.250 -3.086 1.324 H13 8LH 42 8LH H14 H14 H 0 1 N N N -12.889 -43.445 6.749 2.125 -4.740 -0.163 H14 8LH 43 8LH H15 H15 H 0 1 N N N -13.036 -41.718 8.978 3.276 -1.990 1.160 H15 8LH 44 8LH H16 H16 H 0 1 N N N -11.044 -40.478 8.552 3.949 -3.752 -0.344 H16 8LH 45 8LH H17 H17 H 0 1 N N N -12.908 -39.007 8.670 2.616 -0.821 -1.550 H17 8LH 46 8LH H18 H18 H 0 1 N N N -12.749 -40.242 13.310 7.133 0.610 -2.316 H18 8LH 47 8LH H19 H19 H 0 1 N N N -17.104 -40.205 14.018 6.054 3.706 1.820 H19 8LH 48 8LH H20 H20 H 0 1 N N N -17.657 -39.249 12.816 7.464 3.813 0.913 H20 8LH 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8LH O5 P1 DOUB N N 1 8LH O4 P1 SING N N 2 8LH P1 O3 SING N N 3 8LH P1 O6 SING N N 4 8LH O3 C8 SING N N 5 8LH C7 C6 SING N N 6 8LH O6 C9 SING N N 7 8LH C8 C6 SING N N 8 8LH C8 O2 DOUB N N 9 8LH C9 C10 SING N N 10 8LH C6 C5 SING N N 11 8LH C10 C11 SING N N 12 8LH C10 O7 SING N N 13 8LH O8 C11 SING N N 14 8LH C11 C12 SING N N 15 8LH C5 O1 SING N N 16 8LH O7 C13 SING N N 17 8LH O9 C12 SING N N 18 8LH C12 C13 SING N N 19 8LH C13 N3 SING N N 20 8LH C4 N3 SING Y N 21 8LH C4 N4 DOUB Y N 22 8LH N3 C1 SING Y N 23 8LH N4 C2 SING Y N 24 8LH C1 C2 DOUB Y N 25 8LH C1 N2 SING Y N 26 8LH C2 C3 SING Y N 27 8LH N2 C14 DOUB Y N 28 8LH C3 N5 SING N N 29 8LH C3 N1 DOUB Y N 30 8LH C14 N1 SING Y N 31 8LH C4 H1 SING N N 32 8LH O1 H2 SING N N 33 8LH C5 H3 SING N N 34 8LH C5 H4 SING N N 35 8LH C6 H5 SING N N 36 8LH C7 H6 SING N N 37 8LH C7 H7 SING N N 38 8LH C7 H8 SING N N 39 8LH O4 H9 SING N N 40 8LH C9 H10 SING N N 41 8LH C9 H11 SING N N 42 8LH C10 H12 SING N N 43 8LH C11 H13 SING N N 44 8LH O8 H14 SING N N 45 8LH C12 H15 SING N N 46 8LH O9 H16 SING N N 47 8LH C13 H17 SING N N 48 8LH C14 H18 SING N N 49 8LH N5 H19 SING N N 50 8LH N5 H20 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8LH InChI InChI 1.03 "InChI=1S/C14H20N5O9P/c1-6(2-20)14(23)28-29(24,25)26-3-7-9(21)10(22)13(27-7)19-5-18-8-11(15)16-4-17-12(8)19/h4-7,9-10,13,20-22H,2-3H2,1H3,(H,24,25)(H2,15,16,17)/t6-,7-,9-,10-,13-/m1/s1" 8LH InChIKey InChI 1.03 GTYNBQPSEMILMN-KWGHVAAJSA-N 8LH SMILES_CANONICAL CACTVS 3.385 "C[C@H](CO)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 8LH SMILES CACTVS 3.385 "C[CH](CO)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 8LH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H](CO)C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 8LH SMILES "OpenEye OEToolkits" 2.0.6 "CC(CO)C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # _pdbx_chem_comp_identifier.comp_id 8LH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{R})-2-methyl-3-oxidanyl-propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8LH "Create component" 2017-02-09 EBI 8LH "Initial release" 2019-08-28 RCSB 8LH "Other modification" 2023-09-21 RCSB #