data_8MM # _chem_comp.id 8MM _chem_comp.name "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H41 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N2'-acetylgentamicin C1A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-02-28 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8MM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5US1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8MM C4 C1 C 0 1 N N N 61.724 143.311 15.169 -5.064 -1.095 -0.508 C4 8MM 1 8MM C14 C2 C 0 1 N N R 61.845 144.073 25.004 4.723 0.596 -0.216 C14 8MM 2 8MM C5 C3 C 0 1 N N R 62.124 142.156 16.110 -3.806 -1.641 0.174 C5 8MM 3 8MM C6 C4 C 0 1 N N R 61.797 142.669 17.523 -2.894 -0.472 0.554 C6 8MM 4 8MM C11 C5 C 0 1 N N S 62.176 144.719 21.497 1.088 1.361 -0.378 C11 8MM 5 8MM C7 C6 C 0 1 N N R 62.166 144.590 19.018 -1.399 1.126 -0.426 C7 8MM 6 8MM C8 C7 C 0 1 N N S 62.814 145.965 18.946 -1.487 2.258 -1.451 C8 8MM 7 8MM C9 C8 C 0 1 N N N 62.401 146.752 20.163 -0.328 3.234 -1.233 C9 8MM 8 8MM C10 C9 C 0 1 N N R 62.822 146.090 21.435 1.000 2.494 -1.403 C10 8MM 9 8MM C12 C10 C 0 1 N N S 62.658 143.909 20.312 -0.071 0.386 -0.596 C12 8MM 10 8MM C13 C11 C 0 1 N N R 61.459 143.825 23.563 3.398 1.211 0.241 C13 8MM 11 8MM N1 N1 N 0 1 N N N 62.412 146.900 22.594 2.112 3.431 -1.194 N1 8MM 12 8MM N2 N2 N 0 1 N N N 62.418 146.659 17.710 -2.762 2.969 -1.288 N2 8MM 13 8MM C3 C12 C 0 1 N N N 60.210 143.531 15.374 -5.753 -0.101 0.433 C3 8MM 14 8MM N3 N3 N 0 1 N N N 63.550 141.823 16.007 -3.100 -2.536 -0.745 N3 8MM 15 8MM N N4 N 0 1 N N N 63.408 143.407 26.712 5.983 -1.504 -0.336 N 8MM 16 8MM O O1 O 0 1 N N N 60.356 142.864 17.698 -3.605 0.430 1.405 O 8MM 17 8MM C1 C13 C 0 1 N N N 58.430 144.219 17.028 -5.425 1.972 1.790 C1 8MM 18 8MM C15 C14 C 0 1 N N R 62.983 143.193 25.313 4.688 -0.915 0.030 C15 8MM 19 8MM C16 C15 C 0 1 N N R 62.454 141.714 25.043 4.409 -1.173 1.514 C16 8MM 20 8MM C17 C16 C 0 1 N N N 62.025 141.570 23.584 3.096 -0.489 1.905 C17 8MM 21 8MM C18 C17 C 0 1 N N N 63.493 140.626 25.307 4.293 -2.679 1.759 C18 8MM 22 8MM C19 C18 C 0 1 N N N 64.808 143.061 27.021 6.038 -1.804 -1.773 C19 8MM 23 8MM C2 C19 C 0 1 N N S 59.936 143.925 16.823 -4.764 1.008 0.802 C2 8MM 24 8MM CAC C20 C 0 1 N N N 65.226 140.813 14.469 -2.730 -4.753 -1.778 CAC 8MM 25 8MM CAW C21 C 0 1 N N N 63.785 141.302 14.644 -3.457 -3.832 -0.832 CAW 8MM 26 8MM N4 N5 N 0 1 N N N 57.937 144.161 18.433 -4.522 3.100 2.052 N4 8MM 27 8MM O1 O2 O 0 1 N N N 62.582 143.875 17.824 -2.481 0.215 -0.630 O1 8MM 28 8MM O2 O3 O 0 1 N N N 62.142 142.585 20.455 0.011 -0.672 0.361 O2 8MM 29 8MM O3 O4 O 0 1 N N N 62.604 144.140 22.721 2.328 0.670 -0.537 O3 8MM 30 8MM O4 O5 O 0 1 N N N 60.954 142.517 23.308 3.185 0.908 1.621 O4 8MM 31 8MM O5 O6 O 0 1 N N N 61.324 141.466 25.888 5.477 -0.642 2.300 O5 8MM 32 8MM O6 O7 O 0 1 N N N 62.295 145.428 25.145 4.911 0.848 -1.611 O6 8MM 33 8MM OAH O8 O 0 1 N N N 62.859 140.255 14.330 -4.365 -4.258 -0.149 OAH 8MM 34 8MM H1 H1 H 0 1 N N N 61.931 143.040 14.123 -4.787 -0.589 -1.433 H1 8MM 35 8MM H2 H2 H 0 1 N N N 62.280 144.224 15.428 -5.744 -1.917 -0.731 H2 8MM 36 8MM H3 H3 H 0 1 N N N 60.994 143.861 25.668 5.545 1.038 0.347 H3 8MM 37 8MM H4 H4 H 0 1 N N N 61.506 141.273 15.888 -4.089 -2.189 1.073 H4 8MM 38 8MM H5 H5 H 0 1 N N N 62.114 141.884 18.226 -2.016 -0.851 1.078 H5 8MM 39 8MM H6 H6 H 0 1 N N N 61.081 144.819 21.463 1.029 1.776 0.628 H6 8MM 40 8MM H7 H7 H 0 1 N N N 61.071 144.694 19.050 -1.458 1.541 0.580 H7 8MM 41 8MM H8 H8 H 0 1 N N N 63.907 145.840 18.958 -1.428 1.844 -2.457 H8 8MM 42 8MM H9 H9 H 0 1 N N N 62.863 147.749 20.113 -0.391 4.041 -1.963 H9 8MM 43 8MM H10 H10 H 0 1 N N N 61.306 146.855 20.163 -0.387 3.649 -0.227 H10 8MM 44 8MM H11 H11 H 0 1 N N N 63.915 145.971 21.437 1.059 2.079 -2.409 H11 8MM 45 8MM H12 H12 H 0 1 N N N 63.758 143.893 20.308 -0.012 -0.029 -1.602 H12 8MM 46 8MM H13 H13 H 0 1 N N N 60.664 144.545 23.320 3.434 2.292 0.107 H13 8MM 47 8MM H14 H14 H 0 1 N N N 62.700 146.446 23.437 2.077 4.189 -1.859 H14 8MM 48 8MM H15 H15 H 0 1 N N N 62.840 147.802 22.538 2.118 3.780 -0.247 H15 8MM 49 8MM H17 H17 H 0 1 N N N 62.852 147.559 17.679 -2.799 3.786 -1.879 H17 8MM 50 8MM H18 H18 H 0 1 N N N 62.709 146.122 16.918 -3.543 2.356 -1.469 H18 8MM 51 8MM H20 H20 H 0 1 N N N 59.864 144.333 14.706 -6.618 0.333 -0.067 H20 8MM 52 8MM H21 H21 H 0 1 N N N 59.671 142.601 15.140 -6.074 -0.619 1.337 H21 8MM 53 8MM H22 H22 H 0 1 N N N 64.236 141.929 16.727 -2.374 -2.195 -1.291 H22 8MM 54 8MM H24 H24 H 0 1 N N N 63.277 144.375 26.927 6.744 -0.900 -0.063 H24 8MM 55 8MM H26 H26 H 0 1 N N N 58.229 145.230 16.643 -6.358 2.344 1.365 H26 8MM 56 8MM H27 H27 H 0 1 N N N 57.861 143.483 16.441 -5.634 1.449 2.723 H27 8MM 57 8MM H28 H28 H 0 1 N N N 63.819 143.397 24.628 3.899 -1.365 -0.574 H28 8MM 58 8MM H29 H29 H 0 1 N N N 61.667 140.546 23.405 2.275 -0.924 1.333 H29 8MM 59 8MM H30 H30 H 0 1 N N N 62.881 141.780 22.926 2.913 -0.633 2.970 H30 8MM 60 8MM H31 H31 H 0 1 N N N 63.834 140.689 26.351 5.227 -3.165 1.475 H31 8MM 61 8MM H32 H32 H 0 1 N N N 63.043 139.638 25.128 4.095 -2.861 2.815 H32 8MM 62 8MM H33 H33 H 0 1 N N N 64.350 140.766 24.632 3.477 -3.083 1.161 H33 8MM 63 8MM H34 H34 H 0 1 N N N 65.009 143.260 28.084 7.008 -2.239 -2.016 H34 8MM 64 8MM H35 H35 H 0 1 N N N 64.977 141.995 26.809 5.249 -2.512 -2.026 H35 8MM 65 8MM H36 H36 H 0 1 N N N 65.482 143.670 26.400 5.899 -0.885 -2.341 H36 8MM 66 8MM H37 H37 H 0 1 N N N 60.501 144.841 17.050 -4.475 1.551 -0.097 H37 8MM 67 8MM H38 H38 H 0 1 N N N 65.220 139.763 14.140 -1.674 -4.788 -1.510 H38 8MM 68 8MM H39 H39 H 0 1 N N N 65.734 141.431 13.714 -3.156 -5.754 -1.710 H39 8MM 69 8MM H40 H40 H 0 1 N N N 65.759 140.894 15.428 -2.834 -4.382 -2.798 H40 8MM 70 8MM H42 H42 H 0 1 N N N 56.958 144.365 18.452 -4.261 3.562 1.193 H42 8MM 71 8MM H43 H43 H 0 1 N N N 58.094 143.245 18.804 -4.936 3.751 2.702 H43 8MM 72 8MM H45 H45 H 0 1 N N N 62.468 142.203 21.261 0.781 -1.246 0.249 H45 8MM 73 8MM H46 H46 H 0 1 N N N 61.583 141.554 26.798 5.365 -0.768 3.252 H46 8MM 74 8MM H47 H47 H 0 1 N N N 62.539 145.589 26.049 4.944 1.787 -1.840 H47 8MM 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8MM OAH CAW DOUB N N 1 8MM CAC CAW SING N N 2 8MM CAW N3 SING N N 3 8MM C4 C3 SING N N 4 8MM C4 C5 SING N N 5 8MM C3 C2 SING N N 6 8MM N3 C5 SING N N 7 8MM C5 C6 SING N N 8 8MM C2 C1 SING N N 9 8MM C2 O SING N N 10 8MM C1 N4 SING N N 11 8MM C6 O SING N N 12 8MM C6 O1 SING N N 13 8MM N2 C8 SING N N 14 8MM O1 C7 SING N N 15 8MM C8 C7 SING N N 16 8MM C8 C9 SING N N 17 8MM C7 C12 SING N N 18 8MM C9 C10 SING N N 19 8MM C12 O2 SING N N 20 8MM C12 C11 SING N N 21 8MM C10 C11 SING N N 22 8MM C10 N1 SING N N 23 8MM C11 O3 SING N N 24 8MM O3 C13 SING N N 25 8MM O4 C13 SING N N 26 8MM O4 C17 SING N N 27 8MM C13 C14 SING N N 28 8MM C17 C16 SING N N 29 8MM C14 O6 SING N N 30 8MM C14 C15 SING N N 31 8MM C16 C18 SING N N 32 8MM C16 C15 SING N N 33 8MM C16 O5 SING N N 34 8MM C15 N SING N N 35 8MM N C19 SING N N 36 8MM C4 H1 SING N N 37 8MM C4 H2 SING N N 38 8MM C14 H3 SING N N 39 8MM C5 H4 SING N N 40 8MM C6 H5 SING N N 41 8MM C11 H6 SING N N 42 8MM C7 H7 SING N N 43 8MM C8 H8 SING N N 44 8MM C9 H9 SING N N 45 8MM C9 H10 SING N N 46 8MM C10 H11 SING N N 47 8MM C12 H12 SING N N 48 8MM C13 H13 SING N N 49 8MM N1 H14 SING N N 50 8MM N1 H15 SING N N 51 8MM N2 H17 SING N N 52 8MM N2 H18 SING N N 53 8MM C3 H20 SING N N 54 8MM C3 H21 SING N N 55 8MM N3 H22 SING N N 56 8MM N H24 SING N N 57 8MM C1 H26 SING N N 58 8MM C1 H27 SING N N 59 8MM C15 H28 SING N N 60 8MM C17 H29 SING N N 61 8MM C17 H30 SING N N 62 8MM C18 H31 SING N N 63 8MM C18 H32 SING N N 64 8MM C18 H33 SING N N 65 8MM C19 H34 SING N N 66 8MM C19 H35 SING N N 67 8MM C19 H36 SING N N 68 8MM C2 H37 SING N N 69 8MM CAC H38 SING N N 70 8MM CAC H39 SING N N 71 8MM CAC H40 SING N N 72 8MM N4 H42 SING N N 73 8MM N4 H43 SING N N 74 8MM O2 H45 SING N N 75 8MM O5 H46 SING N N 76 8MM O6 H47 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8MM SMILES ACDLabs 12.01 "C1CC(OC(C1NC(C)=O)OC3C(C(OC2C(O)C(NC)C(C)(O)CO2)C(CC3N)N)O)CN" 8MM InChI InChI 1.03 "InChI=1S/C21H41N5O8/c1-9(27)26-13-5-4-10(7-22)32-19(13)33-16-11(23)6-12(24)17(14(16)28)34-20-15(29)18(25-3)21(2,30)8-31-20/h10-20,25,28-30H,4-8,22-24H2,1-3H3,(H,26,27)/t10-,11-,12+,13+,14-,15+,16+,17-,18+,19+,20+,21-/m0/s1" 8MM InChIKey InChI 1.03 RLGSXXMFPPOROB-JOYMZIHVSA-N 8MM SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)CC[C@H]3NC(C)=O)[C@@H]2O" 8MM SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)CC[CH]3NC(C)=O)[CH]2O" 8MM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1CC[C@H](O[C@@H]1O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2O)O[C@@H]3[C@@H]([C@H]([C@@](CO3)(C)O)NC)O)N)N)CN" 8MM SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1CCC(OC1OC2C(CC(C(C2O)OC3C(C(C(CO3)(C)O)NC)O)N)N)CN" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8MM "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside" 8MM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-2-[(1~{R},2~{S},3~{S},4~{R},6~{S})-4,6-bis(azanyl)-3-[(2~{R},3~{R},4~{R},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxan-3-yl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8MM "Create component" 2017-02-28 RCSB 8MM "Initial release" 2017-03-15 RCSB 8MM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8MM _pdbx_chem_comp_synonyms.name "N2'-acetylgentamicin C1A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##