data_8S0 # _chem_comp.id 8S0 _chem_comp.name "L-glucono-1,5-lactone" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-07 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.140 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8S0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8S0 _pdbx_chem_comp_synonyms.name "(3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8S0 C1 C1 C 0 1 N N N 14.242 -32.994 -31.359 0.631 -1.454 0.104 C1 8S0 1 8S0 C2 C2 C 0 1 N N S 13.766 -31.956 -30.480 1.622 -0.348 0.394 C2 8S0 2 8S0 C3 C3 C 0 1 N N R 12.839 -32.452 -29.377 1.101 0.947 -0.241 C3 8S0 3 8S0 C4 C4 C 0 1 N N R 13.494 -33.599 -28.660 -0.338 1.187 0.227 C4 8S0 4 8S0 C5 C5 C 0 1 N N S 13.751 -34.678 -29.651 -1.215 0.008 -0.205 C5 8S0 5 8S0 C6 C6 C 0 1 N N N 14.697 -35.685 -29.052 -2.642 0.219 0.306 C6 8S0 6 8S0 O1 O1 O 0 1 N N N 14.540 -32.750 -32.529 0.998 -2.517 -0.338 O1 8S0 7 8S0 O2 O2 O 0 1 N N N 13.050 -30.909 -31.184 2.893 -0.682 -0.166 O2 8S0 8 8S0 O3 O3 O 0 1 N N N 12.654 -31.376 -28.464 1.924 2.043 0.164 O3 8S0 9 8S0 O4 O4 O 0 1 N N N 12.663 -34.095 -27.570 -0.835 2.391 -0.361 O4 8S0 10 8S0 O5 O5 O 0 1 N N N 14.506 -34.212 -30.825 -0.674 -1.220 0.357 O5 8S0 11 8S0 O6 O6 O 0 1 N N N 14.567 -36.861 -29.827 -3.485 -0.821 -0.195 O6 8S0 12 8S0 H2 H1 H 0 1 N N N 14.637 -31.499 -29.988 1.718 -0.216 1.472 H2 8S0 13 8S0 H3 H2 H 0 1 N N N 11.882 -32.775 -29.812 1.122 0.855 -1.326 H3 8S0 14 8S0 H4 H3 H 0 1 N N N 14.456 -33.255 -28.253 -0.358 1.277 1.313 H4 8S0 15 8S0 H5 H4 H 0 1 N N N 12.811 -35.163 -29.953 -1.224 -0.060 -1.293 H5 8S0 16 8S0 H61 H5 H 0 1 N N N 14.426 -35.887 -28.005 -2.645 0.197 1.395 H61 8S0 17 8S0 H62 H6 H 0 1 N N N 15.730 -35.311 -29.098 -3.012 1.185 -0.039 H62 8S0 18 8S0 HO2 H7 H 0 1 N Y N 13.198 -30.996 -32.118 3.273 -1.501 0.180 HO2 8S0 19 8S0 HO3 H8 H 0 1 N Y N 12.078 -31.652 -27.761 2.852 1.953 -0.092 HO3 8S0 20 8S0 HO4 H9 H 0 1 N Y N 12.508 -33.396 -26.946 -0.326 3.180 -0.131 HO4 8S0 21 8S0 HO6 H10 H 0 1 N N N 15.148 -37.531 -29.486 -4.407 -0.751 0.090 HO6 8S0 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8S0 O1 C1 DOUB N N 1 8S0 C1 O5 SING N N 2 8S0 C1 C2 SING N N 3 8S0 O2 C2 SING N N 4 8S0 O5 C5 SING N N 5 8S0 C2 C3 SING N N 6 8S0 O6 C6 SING N N 7 8S0 C5 C6 SING N N 8 8S0 C5 C4 SING N N 9 8S0 C3 C4 SING N N 10 8S0 C3 O3 SING N N 11 8S0 C4 O4 SING N N 12 8S0 C2 H2 SING N N 13 8S0 C3 H3 SING N N 14 8S0 C4 H4 SING N N 15 8S0 C5 H5 SING N N 16 8S0 C6 H61 SING N N 17 8S0 C6 H62 SING N N 18 8S0 O2 HO2 SING N N 19 8S0 O3 HO3 SING N N 20 8S0 O4 HO4 SING N N 21 8S0 O6 HO6 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8S0 InChI InChI 1.03 "InChI=1S/C6H10O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-5,7-10H,1H2/t2-,3-,4+,5-/m0/s1" 8S0 InChIKey InChI 1.03 PHOQVHQSTUBQQK-KLVWXMOXSA-N 8S0 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1OC(=O)[C@@H](O)[C@H](O)[C@H]1O" 8S0 SMILES CACTVS 3.385 "OC[CH]1OC(=O)[CH](O)[CH](O)[CH]1O" 8S0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@@H]([C@H]([C@@H](C(=O)O1)O)O)O)O" 8S0 SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(C(=O)O1)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 8S0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 8S0 "CARBOHYDRATE ISOMER" L PDB ? 8S0 "CARBOHYDRATE RING" pyranose PDB ? 8S0 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8S0 "Create component" 2017-09-07 RCSB 8S0 "Initial release" 2018-05-23 RCSB 8S0 "Other modification" 2020-07-03 RCSB 8S0 "Modify name" 2020-07-17 RCSB 8S0 "Modify synonyms" 2020-07-17 RCSB 8S0 "Modify internal type" 2020-07-17 RCSB 8S0 "Modify linking type" 2020-07-17 RCSB 8S0 "Modify atom id" 2020-07-17 RCSB 8S0 "Modify component atom id" 2020-07-17 RCSB 8S0 "Modify leaving atom flag" 2020-07-17 RCSB ##