data_8SP # _chem_comp.id 8SP _chem_comp.name "O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C22 H42 N O10 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-01-22 _chem_comp.pdbx_modified_date 2013-02-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 511.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8SP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2LYB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8SP N N N 0 1 N N N -7.482 -26.781 4.650 1.977 3.075 2.247 N 8SP 1 8SP P P P 0 1 N N N -2.907 -25.842 6.651 0.442 1.993 -1.733 P 8SP 2 8SP OG OG O 0 1 N N N -4.477 -25.566 6.534 1.395 2.203 -0.453 OG 8SP 3 8SP C1A C1A C 0 1 N N N -2.147 -30.210 2.325 1.663 -2.359 -1.046 C1A 8SP 4 8SP O1A O1A O 0 1 N N N -3.299 -30.245 2.822 1.853 -3.391 -1.644 O1A 8SP 5 8SP C1B C1B C 0 1 N N N 0.436 -25.533 2.323 -3.670 -1.125 -0.964 C1B 8SP 6 8SP O1B O1B O 0 1 N N N 0.525 -25.725 1.087 -4.250 -0.974 -2.013 O1B 8SP 7 8SP CB CB C 0 1 N N N -5.284 -26.455 5.731 2.065 3.433 -0.174 CB 8SP 8 8SP C1G C1G C 0 1 N N N -2.013 -27.717 2.172 -0.439 -2.238 -2.162 C1G 8SP 9 8SP O1G O1G O 0 1 N N N -1.645 -29.053 1.809 0.522 -1.676 -1.229 O1G 8SP 10 8SP C2A C2A C 0 1 N N N -1.270 -31.400 2.292 2.708 -1.837 -0.093 C2A 8SP 11 8SP C2B C2B C 0 1 N N N 1.520 -24.882 3.091 -4.438 -1.100 0.333 C2B 8SP 12 8SP CA CA C 0 1 N N S -6.530 -25.760 5.125 2.883 3.289 1.110 CA 8SP 13 8SP C2G C2G C 0 1 N N R -1.147 -27.210 3.351 -1.667 -1.328 -2.239 C2G 8SP 14 8SP O2G O2G O 0 1 N N N -0.693 -25.889 3.004 -2.341 -1.315 -0.953 O2G 8SP 15 8SP O2P O2P O 0 1 N N N -2.195 -24.808 7.405 -0.610 3.035 -1.741 O2P 8SP 16 8SP C3A C3A C 0 1 N N N -1.655 -32.546 3.268 3.900 -2.796 -0.069 C3A 8SP 17 8SP C3B C3B C 0 1 N N N 2.165 -23.639 2.413 -5.923 -0.869 0.041 C3B 8SP 18 8SP C C C 0 1 N N N -6.206 -24.857 4.004 3.686 4.544 1.338 C 8SP 19 8SP O O O 0 1 N N N -5.119 -24.238 3.962 3.297 5.376 2.123 OXT 8SP 20 8SP OXT OXT O 0 1 N Y N -7.115 -24.705 2.911 4.833 4.737 0.669 O 8SP 21 8SP C3G C3G C 0 1 N N N -1.891 -27.252 4.715 -1.227 0.093 -2.597 C3G 8SP 22 8SP O3G O3G O 0 1 N N N -2.318 -25.942 5.164 -0.245 0.539 -1.660 O3G 8SP 23 8SP O3P O3P O 0 1 N N N -2.678 -27.373 7.400 1.318 2.105 -3.079 O3P 8SP 24 8SP C4A C4A C 0 1 N N N -0.693 -33.760 3.162 4.961 -2.266 0.899 C4A 8SP 25 8SP C4B C4B C 0 1 N N N 3.712 -23.604 2.561 -6.702 -0.844 1.357 C4B 8SP 26 8SP C5A C5A C 0 1 N N N -0.895 -34.788 4.306 6.153 -3.225 0.922 C5A 8SP 27 8SP C5B C5B C 0 1 N N N 4.312 -22.210 2.234 -8.187 -0.613 1.066 C5B 8SP 28 8SP C6A C6A C 0 1 N N N -0.037 -34.463 5.559 7.214 -2.696 1.890 C6A 8SP 29 8SP C6B C6B C 0 1 N N N 4.974 -22.149 0.831 -8.967 -0.588 2.382 C6B 8SP 30 8SP C7A C7A C 0 1 N N N -0.768 -34.804 6.886 8.406 -3.654 1.913 C7A 8SP 31 8SP C7B C7B C 0 1 N N N 4.222 -21.201 -0.142 -10.451 -0.357 2.091 C7B 8SP 32 8SP C8A C8A C 0 1 N N N 0.043 -34.397 8.136 9.467 -3.125 2.881 C8A 8SP 33 8SP C8B C8B C 0 1 N N N 5.163 -20.221 -0.880 -11.231 -0.332 3.408 C8B 8SP 34 8SP HB3 HB3 H 0 1 N N N -4.665 -26.844 4.909 2.730 3.681 -1.002 HB3 8SP 35 8SP HB2 HB2 H 0 1 N N N -5.621 -27.290 6.363 1.329 4.228 -0.049 HB2 8SP 36 8SP H11G H11G H 0 0 N N N -1.867 -27.055 1.306 0.016 -2.318 -3.149 H11G 8SP 37 8SP H21G H21G H 0 0 N N N -3.072 -27.703 2.470 -0.742 -3.227 -1.820 H21G 8SP 38 8SP H H H 0 1 N N N -8.286 -26.332 4.259 1.341 3.851 2.353 H 8SP 39 8SP H12A H12A H 0 0 N N N -1.289 -31.806 1.270 3.040 -0.852 -0.421 H12A 8SP 40 8SP H22A H22A H 0 0 N N N -0.249 -31.074 2.539 2.282 -1.762 0.908 H22A 8SP 41 8SP H12B H12B H 0 0 N N N 1.106 -24.564 4.059 -4.313 -2.052 0.848 H12B 8SP 42 8SP H22B H22B H 0 0 N N N 2.312 -25.627 3.258 -4.062 -0.294 0.962 H22B 8SP 43 8SP HA HA H 0 1 N N N -7.009 -25.174 5.923 3.558 2.438 1.018 HA 8SP 44 8SP H2G H2G H 0 1 N N N -0.275 -27.876 3.431 -2.348 -1.701 -3.003 H2G 8SP 45 8SP H2 H2 H 0 1 N Y N -7.043 -27.346 3.951 1.474 2.206 2.149 H2 8SP 46 8SP H13A H13A H 0 0 N N N -1.624 -32.159 4.297 3.568 -3.781 0.259 H13A 8SP 47 8SP H23A H23A H 0 0 N N N -2.676 -32.882 3.033 4.326 -2.871 -1.069 H23A 8SP 48 8SP H13B H13B H 0 0 N N N 1.915 -23.654 1.342 -6.048 0.083 -0.474 H13B 8SP 49 8SP H23B H23B H 0 0 N N N 1.748 -22.732 2.874 -6.299 -1.676 -0.588 H23B 8SP 50 8SP H13G H13G H 0 0 N N N -2.778 -27.894 4.612 -0.800 0.099 -3.601 H13G 8SP 51 8SP H23G H23G H 0 0 N N N -1.215 -27.679 5.471 -2.089 0.760 -2.565 H23G 8SP 52 8SP H14A H14A H 0 0 N N N -0.869 -34.265 2.201 5.293 -1.281 0.570 H14A 8SP 53 8SP H24A H24A H 0 0 N N N 0.343 -33.392 3.199 4.535 -2.192 1.899 H24A 8SP 54 8SP H14B H14B H 0 0 N N N 3.973 -23.865 3.597 -6.577 -1.796 1.873 H14B 8SP 55 8SP H24B H24B H 0 0 N N N 4.148 -24.345 1.875 -6.326 -0.038 1.987 H24B 8SP 56 8SP H15A H15A H 0 0 N N N -1.956 -34.788 4.596 5.821 -4.210 1.250 H15A 8SP 57 8SP H25A H25A H 0 0 N N N -0.615 -35.786 3.937 6.579 -3.300 -0.078 H25A 8SP 58 8SP H15B H15B H 0 0 N N N 3.505 -21.463 2.274 -8.312 0.339 0.551 H15B 8SP 59 8SP H25B H25B H 0 0 N N N 5.073 -21.969 2.991 -8.563 -1.420 0.437 H25B 8SP 60 8SP H16A H16A H 0 0 N N N 0.894 -35.046 5.510 7.546 -1.711 1.561 H16A 8SP 61 8SP H26A H26A H 0 0 N N N 0.202 -33.389 5.554 6.788 -2.621 2.890 H26A 8SP 62 8SP H16B H16B H 0 0 N N N 6.008 -21.790 0.944 -8.841 -1.540 2.898 H16B 8SP 63 8SP H26B H26B H 0 0 N N N 4.982 -23.161 0.401 -8.590 0.218 3.012 H26B 8SP 64 8SP H17A H17A H 0 0 N N N -1.731 -34.273 6.903 8.074 -4.639 2.242 H17A 8SP 65 8SP H27A H27A H 0 0 N N N -0.947 -35.889 6.920 8.832 -3.729 0.913 H27A 8SP 66 8SP H17B H17B H 0 0 N N N 3.696 -21.812 -0.890 -10.576 0.595 1.576 H17B 8SP 67 8SP H27B H27B H 0 0 N N N 3.490 -20.617 0.434 -10.827 -1.164 1.462 H27B 8SP 68 8SP H18A H18A H 0 0 N N N -0.522 -34.662 9.042 9.041 -3.050 3.881 H18A 8SP 69 8SP H28A H28A H 0 0 N N N 1.007 -34.928 8.136 10.316 -3.808 2.898 H28A 8SP 70 8SP H38A H38A H 0 0 N N N 0.222 -33.312 8.119 9.799 -2.140 2.553 H38A 8SP 71 8SP H18B H18B H 0 0 N N N 4.572 -19.580 -1.551 -10.854 0.474 4.037 H18B 8SP 72 8SP H28B H28B H 0 0 N N N 5.690 -19.595 -0.145 -12.288 -0.168 3.200 H28B 8SP 73 8SP H38B H38B H 0 0 N N N 5.896 -20.791 -1.469 -11.105 -1.284 3.923 H38B 8SP 74 8SP HXT HXT H 0 1 N Y N -6.740 -24.117 2.266 5.313 5.557 0.849 HXT 8SP 75 8SP H42 H42 H 0 1 N N N -2.130 -27.271 8.169 2.028 1.452 -3.142 H42 8SP 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8SP N CA SING N N 1 8SP N H SING N N 2 8SP N H2 SING N N 3 8SP P OG SING N N 4 8SP P O2P DOUB N N 5 8SP P O3G SING N N 6 8SP P O3P SING N N 7 8SP OG CB SING N N 8 8SP C1A O1A DOUB N N 9 8SP C1A O1G SING N N 10 8SP C1A C2A SING N N 11 8SP C1B O1B DOUB N N 12 8SP C1B C2B SING N N 13 8SP C1B O2G SING N N 14 8SP CB CA SING N N 15 8SP CB HB3 SING N N 16 8SP CB HB2 SING N N 17 8SP C1G O1G SING N N 18 8SP C1G C2G SING N N 19 8SP C1G H11G SING N N 20 8SP C1G H21G SING N N 21 8SP C2A C3A SING N N 22 8SP C2A H12A SING N N 23 8SP C2A H22A SING N N 24 8SP C2B C3B SING N N 25 8SP C2B H12B SING N N 26 8SP C2B H22B SING N N 27 8SP CA C SING N N 28 8SP CA HA SING N N 29 8SP C2G O2G SING N N 30 8SP C2G C3G SING N N 31 8SP C2G H2G SING N N 32 8SP C3A C4A SING N N 33 8SP C3A H13A SING N N 34 8SP C3A H23A SING N N 35 8SP C3B C4B SING N N 36 8SP C3B H13B SING N N 37 8SP C3B H23B SING N N 38 8SP C O DOUB N N 39 8SP C OXT SING N N 40 8SP C3G O3G SING N N 41 8SP C3G H13G SING N N 42 8SP C3G H23G SING N N 43 8SP C4A C5A SING N N 44 8SP C4A H14A SING N N 45 8SP C4A H24A SING N N 46 8SP C4B C5B SING N N 47 8SP C4B H14B SING N N 48 8SP C4B H24B SING N N 49 8SP C5A C6A SING N N 50 8SP C5A H15A SING N N 51 8SP C5A H25A SING N N 52 8SP C5B C6B SING N N 53 8SP C5B H15B SING N N 54 8SP C5B H25B SING N N 55 8SP C6A C7A SING N N 56 8SP C6A H16A SING N N 57 8SP C6A H26A SING N N 58 8SP C6B C7B SING N N 59 8SP C6B H16B SING N N 60 8SP C6B H26B SING N N 61 8SP C7A C8A SING N N 62 8SP C7A H17A SING N N 63 8SP C7A H27A SING N N 64 8SP C7B C8B SING N N 65 8SP C7B H17B SING N N 66 8SP C7B H27B SING N N 67 8SP C8A H18A SING N N 68 8SP C8A H28A SING N N 69 8SP C8A H38A SING N N 70 8SP C8B H18B SING N N 71 8SP C8B H28B SING N N 72 8SP C8B H38B SING N N 73 8SP OXT HXT SING N N 74 8SP O3P H42 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8SP SMILES ACDLabs 12.01 "O=C(OC(COP(=O)(OCC(C(=O)O)N)O)COC(=O)CCCCCCC)CCCCCCC" 8SP InChI InChI 1.03 "InChI=1S/C22H42NO10P/c1-3-5-7-9-11-13-20(24)30-15-18(33-21(25)14-12-10-8-6-4-2)16-31-34(28,29)32-17-19(23)22(26)27/h18-19H,3-17,23H2,1-2H3,(H,26,27)(H,28,29)/t18-,19+/m1/s1" 8SP InChIKey InChI 1.03 TWOCGGYLNFTSJO-MOPGFXCFSA-N 8SP SMILES_CANONICAL CACTVS 3.370 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCC" 8SP SMILES CACTVS 3.370 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCC" 8SP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCC" 8SP SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCCCC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8SP "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine" 8SP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-[[(2R)-2,3-di(octanoyloxy)propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8SP "Create component" 2013-01-22 RCSB 8SP "Modify atom id" 2013-01-24 RCSB 8SP "Initial release" 2013-02-08 RCSB #