data_8VF # _chem_comp.id 8VF _chem_comp.name "(4R)-3-[(2S,3S)-3-[2-[4-[2-azanylethyl(ethyl)amino]-2,6-dimethyl-phenoxy]ethanoylamino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H51 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-04 _chem_comp.pdbx_modified_date 2018-07-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 717.917 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8VF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YIE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8VF C1 C1 C 0 1 Y N N 14.174 -23.040 -21.723 -6.015 2.442 -0.913 C1 8VF 1 8VF C2 C2 C 0 1 Y N N 13.323 -22.386 -22.633 -6.405 3.281 -1.939 C2 8VF 2 8VF C3 C3 C 0 1 Y N N 12.121 -21.780 -22.175 -7.730 3.323 -2.330 C3 8VF 3 8VF C4 C4 C 0 1 Y N N 11.645 -22.037 -20.878 -8.662 2.526 -1.694 C4 8VF 4 8VF C5 C5 C 0 1 Y N N 12.540 -22.719 -19.903 -8.274 1.685 -0.664 C5 8VF 5 8VF C6 C6 C 0 1 Y N N 13.731 -23.174 -20.308 -6.948 1.643 -0.273 C6 8VF 6 8VF C7 C7 C 0 1 N N N 12.312 -22.949 -18.403 -9.087 0.728 0.181 C7 8VF 7 8VF C8 C8 C 0 1 N N R 13.349 -24.037 -18.219 -8.204 0.426 1.411 C8 8VF 8 8VF C9 C9 C 0 1 N N S 14.469 -23.815 -19.177 -6.779 0.651 0.858 C9 8VF 9 8VF O10 O1 O 0 1 N N N 12.709 -25.287 -18.444 -8.376 -0.927 1.838 O10 8VF 10 8VF N11 N1 N 0 1 N N N 15.125 -25.097 -19.470 -6.222 -0.606 0.352 N11 8VF 11 8VF C12 C10 C 0 1 N N N 16.489 -25.245 -19.960 -4.887 -0.756 0.244 C12 8VF 12 8VF C13 C11 C 0 1 N N N 19.160 -26.336 -21.092 -1.921 -2.613 -0.005 C13 8VF 13 8VF N14 N2 N 0 1 N N N 17.806 -26.779 -21.277 -2.945 -1.815 -0.707 N14 8VF 14 8VF C15 C12 C 0 1 N N R 17.005 -26.630 -20.120 -4.315 -2.049 -0.276 C15 8VF 15 8VF C16 C13 C 0 1 N N N 17.975 -27.130 -19.023 -4.428 -3.123 0.830 C16 8VF 16 8VF S17 S1 S 0 1 N N N 19.518 -26.414 -19.453 -2.875 -4.079 0.567 S17 8VF 17 8VF O18 O2 O 0 1 N N N 17.160 -24.268 -20.185 -4.147 0.149 0.565 O18 8VF 18 8VF C19 C14 C 0 1 N N N 17.521 -26.670 -17.604 -4.450 -2.482 2.219 C19 8VF 19 8VF C20 C15 C 0 1 N N N 18.011 -28.650 -19.082 -5.660 -4.005 0.616 C20 8VF 20 8VF C21 C16 C 0 1 N N N 17.251 -27.364 -22.469 -2.634 -0.932 -1.677 C21 8VF 21 8VF C22 C17 C 0 1 N N S 18.076 -27.525 -23.735 -1.196 -0.732 -2.081 C22 8VF 22 8VF O23 O3 O 0 1 N N N 16.086 -27.692 -22.454 -3.511 -0.299 -2.225 O23 8VF 23 8VF C24 C18 C 0 1 N N S 17.941 -26.210 -24.500 -0.415 -0.135 -0.908 C24 8VF 24 8VF N25 N3 N 0 1 N N N 19.076 -26.077 -25.354 1.005 -0.052 -1.259 N25 8VF 25 8VF O26 O4 O 0 1 N N N 17.478 -28.626 -24.390 -1.134 0.159 -3.197 O26 8VF 26 8VF C27 C19 C 0 1 N N N 16.680 -26.156 -25.372 -0.948 1.266 -0.601 C27 8VF 27 8VF C28 C20 C 0 1 Y N N 16.475 -24.761 -25.998 -0.264 1.804 0.630 C28 8VF 28 8VF C29 C21 C 0 1 Y N N 17.076 -24.434 -27.206 -0.806 1.570 1.880 C29 8VF 29 8VF C30 C22 C 0 1 Y N N 16.865 -23.135 -27.754 -0.179 2.064 3.008 C30 8VF 30 8VF C31 C23 C 0 1 Y N N 16.056 -22.216 -27.076 0.989 2.793 2.887 C31 8VF 31 8VF C32 C24 C 0 1 Y N N 15.446 -22.548 -25.871 1.531 3.027 1.637 C32 8VF 32 8VF C33 C25 C 0 1 Y N N 15.659 -23.831 -25.317 0.907 2.528 0.508 C33 8VF 33 8VF C34 C26 C 0 1 N N N 20.139 -25.234 -24.987 1.940 -0.050 -0.288 C34 8VF 34 8VF C35 C27 C 0 1 N N N 21.317 -25.158 -25.990 3.400 0.036 -0.649 C35 8VF 35 8VF O36 O5 O 0 1 N N N 20.154 -24.593 -23.966 1.606 -0.117 0.876 O36 8VF 36 8VF O37 O6 O 0 1 N N N 21.083 -26.205 -26.913 4.187 0.022 0.544 O37 8VF 37 8VF C38 C28 C 0 1 Y N N 22.156 -26.201 -27.878 5.537 0.093 0.394 C38 8VF 38 8VF C39 C29 C 0 1 Y N N 24.290 -26.121 -29.711 8.287 0.238 0.100 C39 8VF 39 8VF C40 C30 C 0 1 Y N N 24.463 -26.766 -28.485 7.538 1.402 0.218 C40 8VF 40 8VF C41 C31 C 0 1 Y N N 23.416 -26.821 -27.557 6.168 1.328 0.370 C41 8VF 41 8VF C42 C32 C 0 1 Y N N 21.966 -25.548 -29.065 6.283 -1.070 0.270 C42 8VF 42 8VF C43 C33 C 0 1 Y N N 23.030 -25.509 -30.000 7.655 -0.998 0.124 C43 8VF 43 8VF C44 C34 C 0 1 N N N 23.614 -27.526 -26.251 5.357 2.591 0.510 C44 8VF 44 8VF C45 C35 C 0 1 N N N 20.624 -24.889 -29.409 5.597 -2.411 0.296 C45 8VF 45 8VF N46 N4 N 0 1 N N N 25.400 -26.063 -30.684 9.676 0.311 -0.054 N46 8VF 46 8VF C47 C36 C 0 1 N N N 25.534 -24.932 -31.521 10.341 1.616 -0.090 C47 8VF 47 8VF C48 C37 C 0 1 N N N 24.719 -25.127 -32.789 10.733 2.029 1.330 C48 8VF 48 8VF C49 C38 C 0 1 N N N 26.364 -27.133 -30.809 10.465 -0.917 -0.178 C49 8VF 49 8VF C50 C39 C 0 1 N N N 27.684 -26.769 -30.097 10.578 -1.302 -1.655 C50 8VF 50 8VF N51 N5 N 0 1 N N N 28.774 -27.587 -30.660 11.370 -2.534 -1.780 N51 8VF 51 8VF H1 H1 H 0 1 N N N 15.126 -23.436 -22.044 -4.979 2.407 -0.611 H1 8VF 52 8VF H2 H2 H 0 1 N N N 13.583 -22.344 -23.680 -5.675 3.903 -2.435 H2 8VF 53 8VF H3 H3 H 0 1 N N N 11.571 -21.118 -22.828 -8.036 3.978 -3.132 H3 8VF 54 8VF H4 H4 H 0 1 N N N 10.645 -21.744 -20.593 -9.697 2.559 -2.000 H4 8VF 55 8VF H5 H5 H 0 1 N N N 12.531 -22.054 -17.803 -10.020 1.198 0.491 H5 8VF 56 8VF H6 H6 H 0 1 N N N 11.293 -23.298 -18.182 -9.289 -0.188 -0.374 H6 8VF 57 8VF H7 H7 H 0 1 N N N 13.737 -23.989 -17.191 -8.422 1.118 2.224 H7 8VF 58 8VF H8 H8 H 0 1 N N N 15.193 -23.105 -18.751 -6.135 1.067 1.632 H8 8VF 59 8VF H9 H9 H 0 1 N N N 12.002 -25.398 -17.819 -9.278 -1.141 2.113 H9 8VF 60 8VF H10 H10 H 0 1 N N N 14.595 -25.932 -19.322 -6.814 -1.330 0.096 H10 8VF 61 8VF H11 H11 H 0 1 N N N 19.845 -26.988 -21.654 -1.127 -2.911 -0.690 H11 8VF 62 8VF H12 H12 H 0 1 N N N 19.265 -25.300 -21.447 -1.512 -2.063 0.843 H12 8VF 63 8VF H13 H13 H 0 1 N N N 16.153 -27.324 -20.164 -4.902 -2.372 -1.135 H13 8VF 64 8VF H14 H14 H 0 1 N N N 18.232 -27.043 -16.852 -5.305 -1.810 2.295 H14 8VF 65 8VF H15 H15 H 0 1 N N N 17.491 -25.571 -17.567 -4.530 -3.260 2.978 H15 8VF 66 8VF H16 H16 H 0 1 N N N 16.519 -27.071 -17.392 -3.530 -1.918 2.373 H16 8VF 67 8VF H17 H17 H 0 1 N N N 18.695 -29.031 -18.310 -5.585 -4.505 -0.350 H17 8VF 68 8VF H18 H18 H 0 1 N N N 17.001 -29.048 -18.905 -5.715 -4.751 1.408 H18 8VF 69 8VF H19 H19 H 0 1 N N N 18.363 -28.970 -20.074 -6.557 -3.386 0.637 H19 8VF 70 8VF H20 H20 H 0 1 N N N 19.130 -27.716 -23.485 -0.759 -1.692 -2.357 H20 8VF 71 8VF H21 H21 H 0 1 N N N 17.908 -25.380 -23.778 -0.536 -0.770 -0.031 H21 8VF 72 8VF H22 H22 H 0 1 N N N 19.115 -26.584 -26.215 1.272 0.002 -2.190 H22 8VF 73 8VF H23 H23 H 0 1 N N N 16.644 -28.824 -23.980 -1.506 1.034 -3.022 H23 8VF 74 8VF H24 H24 H 0 1 N N N 15.806 -26.399 -24.750 -0.747 1.924 -1.446 H24 8VF 75 8VF H25 H25 H 0 1 N N N 16.773 -26.898 -26.179 -2.023 1.216 -0.427 H25 8VF 76 8VF H26 H26 H 0 1 N N N 17.694 -25.153 -27.723 -1.719 1.001 1.975 H26 8VF 77 8VF H27 H27 H 0 1 N N N 17.328 -22.861 -28.690 -0.602 1.882 3.985 H27 8VF 78 8VF H28 H28 H 0 1 N N N 15.903 -21.233 -27.495 1.479 3.180 3.768 H28 8VF 79 8VF H29 H29 H 0 1 N N N 14.816 -21.833 -25.364 2.444 3.596 1.542 H29 8VF 80 8VF H30 H30 H 0 1 N N N 15.200 -24.099 -24.377 1.333 2.707 -0.468 H30 8VF 81 8VF H31 H31 H 0 1 N N N 22.276 -25.307 -25.472 3.671 -0.815 -1.273 H31 8VF 82 8VF H32 H32 H 0 1 N N N 21.325 -24.185 -26.503 3.586 0.961 -1.195 H32 8VF 83 8VF H33 H33 H 0 1 N N N 25.412 -27.226 -28.251 8.029 2.364 0.200 H33 8VF 84 8VF H34 H34 H 0 1 N N N 22.887 -25.009 -30.947 8.236 -1.904 0.032 H34 8VF 85 8VF H35 H35 H 0 1 N N N 23.992 -26.814 -25.503 5.276 2.856 1.564 H35 8VF 86 8VF H36 H36 H 0 1 N N N 22.654 -27.941 -25.910 5.847 3.399 -0.032 H36 8VF 87 8VF H37 H37 H 0 1 N N N 24.341 -28.341 -26.381 4.360 2.430 0.098 H37 8VF 88 8VF H38 H38 H 0 1 N N N 19.976 -25.619 -29.916 5.321 -2.697 -0.719 H38 8VF 89 8VF H39 H39 H 0 1 N N N 20.137 -24.545 -28.485 6.274 -3.158 0.712 H39 8VF 90 8VF H40 H40 H 0 1 N N N 20.797 -24.030 -30.073 4.701 -2.349 0.913 H40 8VF 91 8VF H41 H41 H 0 1 N N N 26.593 -24.797 -31.785 11.235 1.551 -0.710 H41 8VF 92 8VF H42 H42 H 0 1 N N N 25.173 -24.040 -30.989 9.661 2.359 -0.510 H42 8VF 93 8VF H43 H43 H 0 1 N N N 24.828 -24.243 -33.435 11.412 1.286 1.749 H43 8VF 94 8VF H44 H44 H 0 1 N N N 25.080 -26.018 -33.323 11.228 2.999 1.303 H44 8VF 95 8VF H45 H45 H 0 1 N N N 23.659 -25.261 -32.527 9.839 2.094 1.950 H45 8VF 96 8VF H46 H46 H 0 1 N N N 25.950 -28.046 -30.356 11.461 -0.752 0.232 H46 8VF 97 8VF H47 H47 H 0 1 N N N 26.567 -27.312 -31.875 9.975 -1.721 0.370 H47 8VF 98 8VF H48 H48 H 0 1 N N N 27.905 -25.703 -30.252 9.582 -1.467 -2.065 H48 8VF 99 8VF H49 H49 H 0 1 N N N 27.590 -26.971 -29.020 11.069 -0.498 -2.203 H49 8VF 100 8VF H50 H50 H 0 1 N N N 29.634 -27.357 -30.204 11.459 -2.809 -2.746 H50 8VF 101 8VF H51 H51 H 0 1 N N N 28.571 -28.556 -30.519 12.276 -2.427 -1.349 H51 8VF 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8VF C48 C47 SING N N 1 8VF C47 N46 SING N N 2 8VF C49 N46 SING N N 3 8VF C49 C50 SING N N 4 8VF N46 C39 SING N N 5 8VF N51 C50 SING N N 6 8VF C43 C39 DOUB Y N 7 8VF C43 C42 SING Y N 8 8VF C39 C40 SING Y N 9 8VF C45 C42 SING N N 10 8VF C42 C38 DOUB Y N 11 8VF C40 C41 DOUB Y N 12 8VF C38 C41 SING Y N 13 8VF C38 O37 SING N N 14 8VF C30 C29 DOUB Y N 15 8VF C30 C31 SING Y N 16 8VF C41 C44 SING N N 17 8VF C29 C28 SING Y N 18 8VF C31 C32 DOUB Y N 19 8VF O37 C35 SING N N 20 8VF C28 C27 SING N N 21 8VF C28 C33 DOUB Y N 22 8VF C35 C34 SING N N 23 8VF C32 C33 SING Y N 24 8VF C27 C24 SING N N 25 8VF N25 C34 SING N N 26 8VF N25 C24 SING N N 27 8VF C34 O36 DOUB N N 28 8VF C24 C22 SING N N 29 8VF O26 C22 SING N N 30 8VF C22 C21 SING N N 31 8VF C2 C3 DOUB Y N 32 8VF C2 C1 SING Y N 33 8VF C21 O23 DOUB N N 34 8VF C21 N14 SING N N 35 8VF C3 C4 SING Y N 36 8VF C1 C6 DOUB Y N 37 8VF N14 C13 SING N N 38 8VF N14 C15 SING N N 39 8VF C13 S17 SING N N 40 8VF C4 C5 DOUB Y N 41 8VF C6 C5 SING Y N 42 8VF C6 C9 SING N N 43 8VF O18 C12 DOUB N N 44 8VF C15 C12 SING N N 45 8VF C15 C16 SING N N 46 8VF C12 N11 SING N N 47 8VF C5 C7 SING N N 48 8VF N11 C9 SING N N 49 8VF S17 C16 SING N N 50 8VF C9 C8 SING N N 51 8VF C20 C16 SING N N 52 8VF C16 C19 SING N N 53 8VF O10 C8 SING N N 54 8VF C7 C8 SING N N 55 8VF C1 H1 SING N N 56 8VF C2 H2 SING N N 57 8VF C3 H3 SING N N 58 8VF C4 H4 SING N N 59 8VF C7 H5 SING N N 60 8VF C7 H6 SING N N 61 8VF C8 H7 SING N N 62 8VF C9 H8 SING N N 63 8VF O10 H9 SING N N 64 8VF N11 H10 SING N N 65 8VF C13 H11 SING N N 66 8VF C13 H12 SING N N 67 8VF C15 H13 SING N N 68 8VF C19 H14 SING N N 69 8VF C19 H15 SING N N 70 8VF C19 H16 SING N N 71 8VF C20 H17 SING N N 72 8VF C20 H18 SING N N 73 8VF C20 H19 SING N N 74 8VF C22 H20 SING N N 75 8VF C24 H21 SING N N 76 8VF N25 H22 SING N N 77 8VF O26 H23 SING N N 78 8VF C27 H24 SING N N 79 8VF C27 H25 SING N N 80 8VF C29 H26 SING N N 81 8VF C30 H27 SING N N 82 8VF C31 H28 SING N N 83 8VF C32 H29 SING N N 84 8VF C33 H30 SING N N 85 8VF C35 H31 SING N N 86 8VF C35 H32 SING N N 87 8VF C40 H33 SING N N 88 8VF C43 H34 SING N N 89 8VF C44 H35 SING N N 90 8VF C44 H36 SING N N 91 8VF C44 H37 SING N N 92 8VF C45 H38 SING N N 93 8VF C45 H39 SING N N 94 8VF C45 H40 SING N N 95 8VF C47 H41 SING N N 96 8VF C47 H42 SING N N 97 8VF C48 H43 SING N N 98 8VF C48 H44 SING N N 99 8VF C48 H45 SING N N 100 8VF C49 H46 SING N N 101 8VF C49 H47 SING N N 102 8VF C50 H48 SING N N 103 8VF C50 H49 SING N N 104 8VF N51 H50 SING N N 105 8VF N51 H51 SING N N 106 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8VF InChI InChI 1.03 ;InChI=1S/C39H51N5O6S/c1-6-43(17-16-40)28-18-24(2)35(25(3)19-28)50-22-32(46)41-30(20-26-12-8-7-9-13-26)34(47)38(49)44-23-51-39(4,5)36(44)37(48)42-33-29-15-11-10-14-27(29)21-31(33)45/h7-15,18-19,30-31,33-34,36,45,47H,6,16-17,20-23,40H2,1-5H3,(H,41,46)(H,42,48)/t30-,31+,33-,34-,36+/m0/s1 ; 8VF InChIKey InChI 1.03 QVEVEYWLPLMZQY-SQKWSBCUSA-N 8VF SMILES_CANONICAL CACTVS 3.385 "CCN(CCN)c1cc(C)c(OCC(=O)N[C@@H](Cc2ccccc2)[C@H](O)C(=O)N3CSC(C)(C)[C@H]3C(=O)N[C@@H]4[C@H](O)Cc5ccccc45)c(C)c1" 8VF SMILES CACTVS 3.385 "CCN(CCN)c1cc(C)c(OCC(=O)N[CH](Cc2ccccc2)[CH](O)C(=O)N3CSC(C)(C)[CH]3C(=O)N[CH]4[CH](O)Cc5ccccc45)c(C)c1" 8VF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCN(CCN)c1cc(c(c(c1)C)OCC(=O)N[C@@H](Cc2ccccc2)[C@@H](C(=O)N3CSC([C@H]3C(=O)N[C@H]4c5ccccc5C[C@H]4O)(C)C)O)C" 8VF SMILES "OpenEye OEToolkits" 2.0.6 "CCN(CCN)c1cc(c(c(c1)C)OCC(=O)NC(Cc2ccccc2)C(C(=O)N3CSC(C3C(=O)NC4c5ccccc5CC4O)(C)C)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8VF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(4~{R})-3-[(2~{S},3~{S})-3-[2-[4-[2-azanylethyl(ethyl)amino]-2,6-dimethyl-phenoxy]ethanoylamino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-~{N}-[(1~{S},2~{R})-2-oxidanyl-2,3-dihydro-1~{H}-inden-1-yl]-1,3-thiazolidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8VF "Create component" 2017-10-04 PDBJ 8VF "Initial release" 2018-07-11 RCSB #