data_8YD # _chem_comp.id 8YD _chem_comp.name "1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 Cl F N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "KRAS(G12C) inhibitor, acrylamide form, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-20 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.912 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8YD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5V6S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8YD C10 C1 C 0 1 Y N N -5.300 19.238 -22.550 -6.404 -0.826 -0.731 C10 8YD 1 8YD C13 C2 C 0 1 N N N -7.762 16.356 -22.071 -3.476 0.153 -2.907 C13 8YD 2 8YD C20 C3 C 0 1 Y N N -13.811 18.463 -21.939 1.762 1.235 0.138 C20 8YD 3 8YD C22 C4 C 0 1 N N N -14.213 18.491 -19.388 3.489 0.243 1.382 C22 8YD 4 8YD C26 C5 C 0 1 N N N -18.549 19.129 -17.381 7.508 -0.788 -0.968 C26 8YD 5 8YD CL CL1 CL 0 0 N N N -9.370 19.801 -19.515 -1.776 -2.436 -0.547 CL 8YD 6 8YD C02 C6 C 0 1 Y N N -10.279 19.165 -20.887 -1.304 -0.781 -0.322 C02 8YD 7 8YD C03 C7 C 0 1 Y N N -9.599 18.774 -22.035 -2.286 0.222 -0.282 C03 8YD 8 8YD C04 C8 C 0 1 Y N N -8.061 18.876 -22.190 -3.714 -0.142 -0.431 C04 8YD 9 8YD C05 C9 C 0 1 Y N N -7.525 20.191 -22.338 -4.490 -0.454 0.705 C05 8YD 10 8YD C06 C10 C 0 1 Y N N -8.111 21.499 -22.358 -4.212 -0.511 2.089 C06 8YD 11 8YD N07 N1 N 0 1 Y N N -7.136 22.379 -22.533 -5.297 -0.857 2.719 N07 8YD 12 8YD N08 N2 N 0 1 Y N N -5.975 21.711 -22.617 -6.337 -1.046 1.800 N08 8YD 13 8YD C09 C11 C 0 1 Y N N -6.159 20.371 -22.511 -5.845 -0.798 0.544 C09 8YD 14 8YD C11 C12 C 0 1 Y N N -5.834 17.955 -22.397 -5.635 -0.519 -1.831 C11 8YD 15 8YD C12 C13 C 0 1 Y N N -7.210 17.765 -22.233 -4.298 -0.179 -1.689 C12 8YD 16 8YD C14 C14 C 0 1 Y N N -10.341 18.298 -23.103 -1.930 1.551 -0.104 C14 8YD 17 8YD F15 F1 F 0 1 N N N -9.735 17.881 -24.243 -2.878 2.513 -0.065 F15 8YD 18 8YD C16 C15 C 0 1 Y N N -11.748 18.207 -23.036 -0.576 1.887 0.037 C16 8YD 19 8YD N17 N3 N 0 1 Y N N -12.463 17.717 -24.104 -0.176 3.156 0.212 N17 8YD 20 8YD C18 C16 C 0 1 Y N N -13.811 17.636 -24.086 1.097 3.439 0.351 C18 8YD 21 8YD N19 N4 N 0 1 Y N N -14.470 18.024 -22.978 2.047 2.519 0.312 N19 8YD 22 8YD N21 N5 N 0 1 N N N -14.633 18.753 -20.803 2.762 0.286 0.105 N21 8YD 23 8YD C23 C17 C 0 1 N N N -15.264 17.629 -18.746 4.464 -0.939 1.370 C23 8YD 24 8YD N24 N6 N 0 1 N N N -16.433 18.399 -18.620 5.314 -0.832 0.174 N24 8YD 25 8YD C25 C18 C 0 1 N N N -17.298 18.234 -17.471 6.656 -0.900 0.270 C25 8YD 26 8YD C27 C19 C 0 1 N N N -19.794 18.260 -17.411 8.984 -0.896 -0.583 C27 8YD 27 8YD O28 O1 O 0 1 N N N -17.005 17.403 -16.642 7.179 -1.052 1.354 O28 8YD 28 8YD C29 C20 C 0 1 N N N -16.714 19.362 -19.647 4.659 -0.647 -1.130 C29 8YD 29 8YD C30 C21 C 0 1 N N N -16.060 19.066 -20.967 3.676 0.523 -1.020 C30 8YD 30 8YD C31 C22 C 0 1 Y N N -12.410 18.573 -21.908 0.403 0.864 -0.007 C31 8YD 31 8YD C32 C23 C 0 1 Y N N -11.661 19.087 -20.820 0.015 -0.469 -0.188 C32 8YD 32 8YD H101 H1 H 0 0 N N N -4.238 19.368 -22.697 -7.443 -1.094 -0.858 H101 8YD 33 8YD H132 H2 H 0 0 N N N -7.771 16.086 -21.005 -3.539 1.222 -3.108 H132 8YD 34 8YD H131 H3 H 0 0 N N N -8.787 16.316 -22.468 -2.436 -0.123 -2.730 H131 8YD 35 8YD H133 H4 H 0 0 N N N -7.127 15.648 -22.623 -3.857 -0.401 -3.765 H133 8YD 36 8YD H222 H5 H 0 0 N N N -13.244 17.970 -19.376 4.043 1.171 1.516 H222 8YD 37 8YD H221 H6 H 0 0 N N N -14.125 19.442 -18.842 2.780 0.121 2.200 H221 8YD 38 8YD H261 H7 H 0 0 N Y N -18.524 19.702 -16.442 7.252 -1.591 -1.659 H261 8YD 39 8YD H262 H8 H 0 0 N N N -18.566 19.823 -18.234 7.327 0.174 -1.447 H262 8YD 40 8YD H061 H9 H 0 0 N N N -9.161 21.727 -22.250 -3.257 -0.301 2.549 H061 8YD 41 8YD H081 H10 H 0 0 N N N -5.084 22.147 -22.742 -7.246 -1.307 2.014 H081 8YD 42 8YD H111 H11 H 0 0 N N N -5.175 17.099 -22.406 -6.077 -0.544 -2.816 H111 8YD 43 8YD H181 H12 H 0 0 N N N -14.351 17.266 -24.945 1.383 4.471 0.490 H181 8YD 44 8YD H232 H13 H 0 0 N N N -15.462 16.749 -19.375 5.086 -0.909 2.264 H232 8YD 45 8YD H231 H14 H 0 0 N N N -14.923 17.301 -17.753 3.906 -1.875 1.340 H231 8YD 46 8YD H271 H15 H 0 0 N N N -20.688 18.897 -17.347 9.165 -1.858 -0.104 H271 8YD 47 8YD H273 H16 H 0 0 N N N -19.819 17.687 -18.350 9.600 -0.815 -1.479 H273 8YD 48 8YD H272 H17 H 0 0 N N N -19.777 17.566 -16.558 9.240 -0.093 0.107 H272 8YD 49 8YD H291 H18 H 0 0 N N N -16.364 20.346 -19.302 5.410 -0.425 -1.889 H291 8YD 50 8YD H292 H19 H 0 0 N N N -17.803 19.394 -19.801 4.122 -1.556 -1.402 H292 8YD 51 8YD H301 H20 H 0 0 N N N -16.160 19.945 -21.621 3.102 0.604 -1.943 H301 8YD 52 8YD H302 H21 H 0 0 N N N -16.564 18.205 -21.430 4.228 1.447 -0.852 H302 8YD 53 8YD H321 H22 H 0 0 N N N -12.173 19.421 -19.930 0.761 -1.250 -0.220 H321 8YD 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8YD F15 C14 SING N N 1 8YD N17 C18 DOUB Y N 2 8YD N17 C16 SING Y N 3 8YD C18 N19 SING Y N 4 8YD C14 C16 DOUB Y N 5 8YD C14 C03 SING Y N 6 8YD C16 C31 SING Y N 7 8YD N19 C20 DOUB Y N 8 8YD N08 N07 SING Y N 9 8YD N08 C09 SING Y N 10 8YD C10 C09 DOUB Y N 11 8YD C10 C11 SING Y N 12 8YD N07 C06 DOUB Y N 13 8YD C09 C05 SING Y N 14 8YD C11 C12 DOUB Y N 15 8YD C06 C05 SING Y N 16 8YD C05 C04 DOUB Y N 17 8YD C12 C04 SING Y N 18 8YD C12 C13 SING N N 19 8YD C04 C03 SING N N 20 8YD C03 C02 DOUB Y N 21 8YD C20 C31 SING Y N 22 8YD C20 N21 SING N N 23 8YD C31 C32 DOUB Y N 24 8YD C30 N21 SING N N 25 8YD C30 C29 SING N N 26 8YD C02 C32 SING Y N 27 8YD C02 CL SING N N 28 8YD N21 C22 SING N N 29 8YD C29 N24 SING N N 30 8YD C22 C23 SING N N 31 8YD C23 N24 SING N N 32 8YD N24 C25 SING N N 33 8YD C25 C26 SING N N 34 8YD C25 O28 DOUB N N 35 8YD C27 C26 SING N N 36 8YD C10 H101 SING N N 37 8YD C13 H132 SING N N 38 8YD C13 H131 SING N N 39 8YD C13 H133 SING N N 40 8YD C22 H222 SING N N 41 8YD C22 H221 SING N N 42 8YD C26 H261 SING N N 43 8YD C26 H262 SING N N 44 8YD C06 H061 SING N N 45 8YD N08 H081 SING N N 46 8YD C11 H111 SING N N 47 8YD C18 H181 SING N N 48 8YD C23 H232 SING N N 49 8YD C23 H231 SING N N 50 8YD C27 H271 SING N N 51 8YD C27 H273 SING N N 52 8YD C27 H272 SING N N 53 8YD C29 H291 SING N N 54 8YD C29 H292 SING N N 55 8YD C30 H301 SING N N 56 8YD C30 H302 SING N N 57 8YD C32 H321 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8YD SMILES ACDLabs 12.01 "c4c5c(c(c2c(Cl)cc3c(N1CCN(C(CC)=O)CC1)ncnc3c2F)c(C)c4)cnn5" 8YD InChI InChI 1.03 "InChI=1S/C23H22ClFN6O/c1-3-18(32)30-6-8-31(9-7-30)23-14-10-16(24)20(21(25)22(14)26-12-27-23)19-13(2)4-5-17-15(19)11-28-29-17/h4-5,10-12H,3,6-9H2,1-2H3,(H,28,29)" 8YD InChIKey InChI 1.03 BNGJOZTWYUJUMW-UHFFFAOYSA-N 8YD SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCN(CC1)c2ncnc3c(F)c(c(Cl)cc23)c4c(C)ccc5[nH]ncc45" 8YD SMILES CACTVS 3.385 "CCC(=O)N1CCN(CC1)c2ncnc3c(F)c(c(Cl)cc23)c4c(C)ccc5[nH]ncc45" 8YD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCN(CC1)c2c3cc(c(c(c3ncn2)F)c4c(ccc5c4cn[nH]5)C)Cl" 8YD SMILES "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCN(CC1)c2c3cc(c(c(c3ncn2)F)c4c(ccc5c4cn[nH]5)C)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8YD "SYSTEMATIC NAME" ACDLabs 12.01 "1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one" 8YD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-[4-[6-chloranyl-8-fluoranyl-7-(5-methyl-1~{H}-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl]propan-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8YD "Create component" 2017-03-20 RCSB 8YD "Modify synonyms" 2017-03-21 RCSB 8YD "Initial release" 2017-06-28 RCSB 8YD "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8YD _pdbx_chem_comp_synonyms.name "KRAS(G12C) inhibitor, acrylamide form, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##