data_9D9 # _chem_comp.id 9D9 _chem_comp.name "[5-(2-amino-4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-1,1-difluoropentyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 F2 N4 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DFPP-DG _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-02-09 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.232 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9D9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FUC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9D9 O2P O2P O 0 1 N N N 32.386 -14.941 24.980 -5.070 -0.683 -1.841 O2P 9D9 1 9D9 P P P 0 1 N N N 31.339 -14.099 24.170 -4.989 0.392 -0.645 P 9D9 2 9D9 O3P O3P O 0 1 N N N 30.031 -13.864 25.068 -4.591 1.832 -1.244 O3P 9D9 3 9D9 O1P O1P O 0 1 N N N 30.971 -14.699 22.846 -6.305 0.483 0.025 O1P 9D9 4 9D9 C14 C14 C 0 1 N N N 31.984 -12.416 23.858 -3.728 -0.135 0.561 C14 9D9 5 9D9 F1 F1 F 0 1 N N N 32.933 -12.497 22.886 -3.658 0.799 1.600 F1 9D9 6 9D9 F2 F2 F 0 1 N N N 30.986 -11.646 23.410 -4.074 -1.386 1.081 F2 9D9 7 9D9 C13 C13 C 0 1 N N N 32.610 -11.835 25.120 -2.367 -0.230 -0.132 C13 9D9 8 9D9 C12 C12 C 0 1 N N N 32.794 -10.311 24.962 -1.309 -0.672 0.880 C12 9D9 9 9D9 C11 C11 C 0 1 N N N 33.395 -9.685 26.227 0.052 -0.766 0.186 C11 9D9 10 9D9 C10 C10 C 0 1 N N N 32.617 -10.111 27.492 1.111 -1.208 1.199 C10 9D9 11 9D9 C9 C9 C 0 1 Y N N 33.052 -9.320 28.727 2.451 -1.302 0.516 C9 9D9 12 9D9 C8 C8 C 0 1 Y N N 34.109 -9.559 29.530 2.996 -2.415 -0.013 C8 9D9 13 9D9 N7 N7 N 0 1 Y N N 34.132 -8.625 30.503 4.213 -2.117 -0.545 N7 9D9 14 9D9 C5 C5 C 0 1 Y N N 33.095 -7.755 30.358 4.462 -0.775 -0.355 C5 9D9 15 9D9 C4 C4 C 0 1 Y N N 32.407 -8.199 29.229 3.355 -0.237 0.312 C4 9D9 16 9D9 N3 N3 N 0 1 N N N 31.232 -7.564 28.714 3.338 1.075 0.620 N3 9D9 17 9D9 C2 C2 C 0 1 N N N 30.853 -6.546 29.335 4.342 1.857 0.302 C2 9D9 18 9D9 N2 N2 N 0 1 N N N 29.744 -5.842 29.017 4.284 3.188 0.634 N2 9D9 19 9D9 N1 N1 N 0 1 N N N 31.485 -5.981 30.503 5.444 1.384 -0.350 N1 9D9 20 9D9 C6 C6 C 0 1 N N N 32.657 -6.625 31.025 5.533 0.078 -0.684 C6 9D9 21 9D9 O6 O6 O 0 1 N N N 33.195 -6.130 32.022 6.514 -0.351 -1.268 O6 9D9 22 9D9 H1 H1 H 0 1 N N N 32.622 -15.716 24.484 -5.722 -0.467 -2.521 H1 9D9 23 9D9 H2 H2 H 0 1 N N N 29.262 -14.151 24.590 -3.737 1.847 -1.699 H2 9D9 24 9D9 H3 H3 H 0 1 N N N 31.953 -12.036 25.979 -2.422 -0.957 -0.942 H3 9D9 25 9D9 H4 H4 H 0 1 N N N 33.590 -12.305 25.291 -2.097 0.746 -0.538 H4 9D9 26 9D9 H5 H5 H 0 1 N N N 33.466 -10.118 24.113 -1.254 0.056 1.689 H5 9D9 27 9D9 H6 H6 H 0 1 N N N 31.814 -9.851 24.766 -1.578 -1.647 1.285 H6 9D9 28 9D9 H7 H7 H 0 1 N N N 34.441 -10.010 26.324 -0.003 -1.494 -0.623 H7 9D9 29 9D9 H8 H8 H 0 1 N N N 33.358 -8.589 26.136 0.322 0.209 -0.219 H8 9D9 30 9D9 H9 H9 H 0 1 N N N 31.543 -9.942 27.322 1.165 -0.481 2.009 H9 9D9 31 9D9 H10 H10 H 0 1 N N N 32.795 -11.181 27.675 0.841 -2.183 1.604 H10 9D9 32 9D9 H11 H11 H 0 1 N N N 34.819 -10.364 29.413 2.537 -3.394 -0.015 H11 9D9 33 9D9 H12 H12 H 0 1 N N N 34.816 -8.578 31.231 4.807 -2.746 -0.985 H12 9D9 34 9D9 H13 H13 H 0 1 N N N 29.174 -6.128 28.246 3.507 3.539 1.098 H13 9D9 35 9D9 H14 H14 H 0 1 N N N 29.493 -5.036 29.552 5.019 3.778 0.405 H14 9D9 36 9D9 H15 H15 H 0 1 N N N 31.115 -5.160 30.938 6.169 1.988 -0.571 H15 9D9 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9D9 O1P P DOUB N N 1 9D9 F1 C14 SING N N 2 9D9 F2 C14 SING N N 3 9D9 C14 P SING N N 4 9D9 C14 C13 SING N N 5 9D9 P O2P SING N N 6 9D9 P O3P SING N N 7 9D9 C12 C13 SING N N 8 9D9 C12 C11 SING N N 9 9D9 C11 C10 SING N N 10 9D9 C10 C9 SING N N 11 9D9 N3 C4 SING N N 12 9D9 N3 C2 DOUB N N 13 9D9 C9 C4 SING Y N 14 9D9 C9 C8 DOUB Y N 15 9D9 N2 C2 SING N N 16 9D9 C4 C5 DOUB Y N 17 9D9 C2 N1 SING N N 18 9D9 C8 N7 SING Y N 19 9D9 C5 N7 SING Y N 20 9D9 C5 C6 SING N N 21 9D9 N1 C6 SING N N 22 9D9 C6 O6 DOUB N N 23 9D9 O2P H1 SING N N 24 9D9 O3P H2 SING N N 25 9D9 C13 H3 SING N N 26 9D9 C13 H4 SING N N 27 9D9 C12 H5 SING N N 28 9D9 C12 H6 SING N N 29 9D9 C11 H7 SING N N 30 9D9 C11 H8 SING N N 31 9D9 C10 H9 SING N N 32 9D9 C10 H10 SING N N 33 9D9 C8 H11 SING N N 34 9D9 N7 H12 SING N N 35 9D9 N2 H13 SING N N 36 9D9 N2 H14 SING N N 37 9D9 N1 H15 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9D9 SMILES ACDLabs 12.01 "OP(O)(=O)C(CCCCc1c2c(nc1)C(NC(=N2)N)=O)(F)F" 9D9 InChI InChI 1.03 "InChI=1S/C11H15F2N4O4P/c12-11(13,22(19,20)21)4-2-1-3-6-5-15-8-7(6)16-10(14)17-9(8)18/h5,15H,1-4H2,(H2,19,20,21)(H3,14,16,17,18)" 9D9 InChIKey InChI 1.03 OISKFAFOKMNXNK-UHFFFAOYSA-N 9D9 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2c(CCCCC(F)(F)[P](O)(O)=O)c[nH]c2C(=O)N1" 9D9 SMILES CACTVS 3.385 "NC1=Nc2c(CCCCC(F)(F)[P](O)(O)=O)c[nH]c2C(=O)N1" 9D9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)C(=O)NC(=N2)N)CCCCC(F)(F)P(=O)(O)O" 9D9 SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)C(=O)NC(=N2)N)CCCCC(F)(F)P(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9D9 "SYSTEMATIC NAME" ACDLabs 12.01 "[5-(2-amino-4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-1,1-difluoropentyl]phosphonic acid" 9D9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[5-(2-azanyl-4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)-1,1-bis(fluoranyl)pentyl]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9D9 "Create component" 2009-02-09 PDBJ 9D9 "Modify descriptor" 2011-06-04 RCSB 9D9 "Modify name" 2016-06-21 PDBJ 9D9 "Modify formula" 2016-06-21 PDBJ 9D9 "Modify synonyms" 2016-06-21 PDBJ 9D9 "Modify atom id" 2016-06-21 PDBJ 9D9 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9D9 _pdbx_chem_comp_synonyms.name DFPP-DG _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##