data_9KO # _chem_comp.id 9KO _chem_comp.name "N-{3-[7-{[6-(4-acetylpiperazin-1-yl)pyridin-3-yl]amino}-1-methyl-2-oxo-1,4-dihydropyrimido[4,5-d]pyrimidin-3(2H)-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H32 F3 N9 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-21 _chem_comp.pdbx_modified_date 2018-09-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 659.661 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9KO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ZXB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9KO C10 C1 C 0 1 Y N N -16.676 -4.562 10.774 -8.885 2.316 2.203 C10 9KO 1 9KO C13 C2 C 0 1 N N N -19.412 -3.029 12.943 -8.511 4.047 -1.136 C13 9KO 2 9KO C17 C3 C 0 1 Y N N -17.521 -2.086 11.648 -7.462 1.999 -0.158 C17 9KO 3 9KO C20 C4 C 0 1 Y N N -13.587 2.576 8.795 -3.120 -2.727 0.874 C20 9KO 4 9KO C22 C5 C 0 1 N N N -12.129 4.145 10.020 -1.816 -2.747 -1.120 C22 9KO 5 9KO C24 C6 C 0 1 N N N -10.589 5.753 11.258 -0.698 -2.854 -3.253 C24 9KO 6 9KO C01 C7 C 0 1 N N N -12.461 3.665 6.777 -2.334 -5.060 1.354 C01 9KO 7 9KO C02 C8 C 0 1 Y N N -13.110 2.461 7.481 -3.364 -3.965 1.456 C02 9KO 8 9KO C03 C9 C 0 1 Y N N -13.219 1.266 6.777 -4.549 -4.192 2.128 C03 9KO 9 9KO C04 C10 C 0 1 Y N N -13.808 0.185 7.400 -5.496 -3.190 2.224 C04 9KO 10 9KO C05 C11 C 0 1 Y N N -14.256 0.285 8.718 -5.258 -1.950 1.644 C05 9KO 11 9KO C07 C12 C 0 1 N N N -15.727 -0.898 10.457 -6.367 -0.053 0.735 C07 9KO 12 9KO C08 C13 C 0 1 Y N N -16.400 -2.199 10.853 -7.303 1.082 0.883 C08 9KO 13 9KO C09 C14 C 0 1 Y N N -15.976 -3.429 10.389 -8.018 1.252 2.070 C09 9KO 14 9KO C11 C15 C 0 1 Y N N -17.787 -4.463 11.599 -9.047 3.215 1.163 C11 9KO 15 9KO C12 C16 C 0 1 Y N N -18.207 -3.213 12.032 -8.337 3.056 -0.014 C12 9KO 16 9KO C19 C17 C 0 1 Y N N -14.169 1.493 9.417 -4.068 -1.719 0.968 C19 9KO 17 9KO C25 C18 C 0 1 Y N N -12.941 6.485 10.638 0.473 -2.059 -1.255 C25 9KO 18 9KO C27 C19 C 0 1 Y N N -13.617 8.627 11.210 2.673 -1.403 -1.410 C27 9KO 19 9KO C29 C20 C 0 1 Y N N -12.039 10.404 12.310 5.011 -0.836 -1.594 C29 9KO 20 9KO C30 C21 C 0 1 Y N N -11.804 11.774 12.285 5.336 -1.281 -0.314 C30 9KO 21 9KO C31 C22 C 0 1 Y N N -10.592 12.254 12.725 6.543 -0.886 0.234 C31 9KO 22 9KO C32 C23 C 0 1 Y N N -9.654 11.358 13.192 7.387 -0.064 -0.506 C32 9KO 23 9KO C34 C24 C 0 1 Y N N -11.064 9.553 12.804 5.902 -0.018 -2.272 C34 9KO 24 9KO C36 C25 C 0 1 N N N -8.017 13.279 13.872 9.340 1.197 -0.901 C36 9KO 25 9KO C37 C26 C 0 1 N N N -6.498 13.510 13.978 10.742 1.470 -0.347 C37 9KO 26 9KO C39 C27 C 0 1 N N N -4.187 12.459 13.748 11.239 3.143 1.376 C39 9KO 27 9KO C40 C28 C 0 1 N N N -3.338 11.188 13.873 11.191 3.611 2.808 C40 9KO 28 9KO C42 C29 C 0 1 N N N -6.175 11.157 14.483 9.774 1.271 1.976 C42 9KO 29 9KO C43 C30 C 0 1 N N N -7.658 11.160 14.785 8.409 1.007 1.331 C43 9KO 30 9KO C45 C31 C 0 1 Y N N -15.126 7.259 10.093 1.669 -1.273 0.663 C45 9KO 31 9KO C46 C32 C 0 1 Y N N -14.157 6.229 10.073 0.510 -1.756 0.107 C46 9KO 32 9KO C47 C33 C 0 1 N N N -14.435 4.867 9.432 -0.742 -1.974 0.920 C47 9KO 33 9KO F14 F1 F 0 1 N N N -20.275 -2.069 12.524 -8.838 5.299 -0.606 F14 9KO 34 9KO F15 F2 F 0 1 N N N -18.897 -2.565 14.102 -7.318 4.144 -1.861 F15 9KO 35 9KO F16 F3 F 0 1 N N N -20.085 -4.209 13.096 -9.537 3.616 -1.984 F16 9KO 36 9KO N06 N1 N 0 1 N N N -14.886 -0.900 9.269 -6.216 -0.936 1.742 N06 9KO 37 9KO N21 N2 N 0 1 N N N -13.414 3.869 9.428 -1.917 -2.496 0.198 N21 9KO 38 9KO N23 N3 N 0 1 N N N -11.872 5.452 10.640 -0.692 -2.546 -1.821 N23 9KO 39 9KO N26 N4 N 0 1 Y N N -12.694 7.686 11.198 1.569 -1.870 -1.978 N26 9KO 40 9KO N28 N5 N 0 1 N N N -13.347 9.922 11.833 3.801 -1.215 -2.191 N28 9KO 41 9KO N33 N6 N 0 1 Y N N -9.914 10.059 13.218 7.045 0.339 -1.719 N33 9KO 42 9KO N35 N7 N 0 1 N N N -8.366 11.842 13.676 8.604 0.338 0.037 N35 9KO 43 9KO N38 N8 N 0 1 N N N -5.622 12.391 14.071 10.610 2.007 1.016 N38 9KO 44 9KO N44 N9 N 0 1 Y N N -14.819 8.424 10.673 2.730 -1.108 -0.120 N44 9KO 45 9KO O18 O1 O 0 1 N N N -15.935 0.079 11.104 -5.735 -0.189 -0.294 O18 9KO 46 9KO O41 O2 O 0 1 N N N -3.671 13.469 13.391 11.844 3.790 0.547 O41 9KO 47 9KO O48 O3 O 0 1 N N N -11.301 3.290 9.990 -2.790 -3.182 -1.702 O48 9KO 48 9KO H1 H1 H 0 1 N N N -16.353 -5.533 10.428 -9.442 2.446 3.119 H1 9KO 49 9KO H2 H2 H 0 1 N N N -17.860 -1.112 11.969 -6.909 1.876 -1.077 H2 9KO 50 9KO H3 H3 H 0 1 N N N -10.606 6.777 11.659 -1.682 -3.224 -3.542 H3 9KO 51 9KO H4 H4 H 0 1 N N N -10.400 5.042 12.076 -0.468 -1.952 -3.820 H4 9KO 52 9KO H5 H5 H 0 1 N N N -9.791 5.667 10.506 0.053 -3.616 -3.464 H5 9KO 53 9KO H6 H6 H 0 1 N N N -13.235 4.244 6.251 -1.653 -4.999 2.203 H6 9KO 54 9KO H7 H7 H 0 1 N N N -11.969 4.305 7.524 -2.833 -6.029 1.358 H7 9KO 55 9KO H8 H8 H 0 1 N N N -11.715 3.307 6.052 -1.771 -4.945 0.428 H8 9KO 56 9KO H9 H9 H 0 1 N N N -12.851 1.186 5.765 -4.737 -5.155 2.580 H9 9KO 57 9KO H10 H10 H 0 1 N N N -13.923 -0.745 6.864 -6.421 -3.371 2.750 H10 9KO 58 9KO H11 H11 H 0 1 N N N -15.117 -3.506 9.739 -7.892 0.551 2.882 H11 9KO 59 9KO H12 H12 H 0 1 N N N -18.321 -5.352 11.902 -9.731 4.044 1.270 H12 9KO 60 9KO H13 H13 H 0 1 N N N -14.550 1.575 10.424 -3.879 -0.754 0.521 H13 9KO 61 9KO H14 H14 H 0 1 N N N -12.563 12.453 11.925 4.661 -1.918 0.238 H14 9KO 62 9KO H15 H15 H 0 1 N N N -10.379 13.313 12.705 6.827 -1.212 1.224 H15 9KO 63 9KO H16 H16 H 0 1 N N N -11.241 8.489 12.851 5.657 0.331 -3.265 H16 9KO 64 9KO H17 H17 H 0 1 N N N -8.402 13.855 13.018 8.808 2.141 -1.024 H17 9KO 65 9KO H18 H18 H 0 1 N N N -8.493 13.634 14.798 9.421 0.697 -1.866 H18 9KO 66 9KO H19 H19 H 0 1 N N N -6.198 14.078 13.085 11.312 0.541 -0.320 H19 9KO 67 9KO H20 H20 H 0 1 N N N -6.330 14.123 14.876 11.251 2.197 -0.979 H20 9KO 68 9KO H21 H21 H 0 1 N N N -2.298 11.412 13.593 10.692 2.858 3.419 H21 9KO 69 9KO H22 H22 H 0 1 N N N -3.369 10.827 14.912 12.206 3.762 3.175 H22 9KO 70 9KO H23 H23 H 0 1 N N N -3.738 10.412 13.204 10.640 4.549 2.865 H23 9KO 71 9KO H24 H24 H 0 1 N N N -5.997 10.425 13.682 9.642 1.867 2.879 H24 9KO 72 9KO H25 H25 H 0 1 N N N -5.647 10.840 15.394 10.249 0.323 2.229 H25 9KO 73 9KO H26 H26 H 0 1 N N N -7.843 11.696 15.728 7.815 0.368 1.984 H26 9KO 74 9KO H27 H27 H 0 1 N N N -8.020 10.125 14.875 7.890 1.953 1.177 H27 9KO 75 9KO H28 H28 H 0 1 N N N -16.098 7.107 9.647 1.718 -1.033 1.715 H28 9KO 76 9KO H29 H29 H 0 1 N N N -14.701 5.056 8.382 -0.505 -2.669 1.725 H29 9KO 77 9KO H30 H30 H 0 1 N N N -15.300 4.437 9.958 -1.021 -1.022 1.372 H30 9KO 78 9KO H31 H31 H 0 1 N N N -14.733 -1.772 8.804 -6.771 -0.868 2.534 H31 9KO 79 9KO H32 H32 H 0 1 N N N -14.125 10.540 11.946 3.754 -1.347 -3.151 H32 9KO 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9KO C01 C02 SING N N 1 9KO C03 C04 DOUB Y N 2 9KO C03 C02 SING Y N 3 9KO C04 C05 SING Y N 4 9KO C02 C20 DOUB Y N 5 9KO C05 N06 SING N N 6 9KO C05 C19 DOUB Y N 7 9KO C20 C19 SING Y N 8 9KO C20 N21 SING N N 9 9KO N06 C07 SING N N 10 9KO N21 C47 SING N N 11 9KO N21 C22 SING N N 12 9KO C47 C46 SING N N 13 9KO O48 C22 DOUB N N 14 9KO C22 N23 SING N N 15 9KO C46 C45 DOUB Y N 16 9KO C46 C25 SING Y N 17 9KO C45 N44 SING Y N 18 9KO C09 C10 DOUB Y N 19 9KO C09 C08 SING Y N 20 9KO C07 C08 SING N N 21 9KO C07 O18 DOUB N N 22 9KO C25 N23 SING N N 23 9KO C25 N26 DOUB Y N 24 9KO N23 C24 SING N N 25 9KO N44 C27 DOUB Y N 26 9KO C10 C11 SING Y N 27 9KO C08 C17 DOUB Y N 28 9KO N26 C27 SING Y N 29 9KO C27 N28 SING N N 30 9KO C11 C12 DOUB Y N 31 9KO C17 C12 SING Y N 32 9KO N28 C29 SING N N 33 9KO C12 C13 SING N N 34 9KO C30 C29 DOUB Y N 35 9KO C30 C31 SING Y N 36 9KO C29 C34 SING Y N 37 9KO F14 C13 SING N N 38 9KO C31 C32 DOUB Y N 39 9KO C34 N33 DOUB Y N 40 9KO C13 F16 SING N N 41 9KO C13 F15 SING N N 42 9KO C32 N33 SING Y N 43 9KO C32 N35 SING N N 44 9KO O41 C39 DOUB N N 45 9KO N35 C36 SING N N 46 9KO N35 C43 SING N N 47 9KO C39 C40 SING N N 48 9KO C39 N38 SING N N 49 9KO C36 C37 SING N N 50 9KO C37 N38 SING N N 51 9KO N38 C42 SING N N 52 9KO C42 C43 SING N N 53 9KO C10 H1 SING N N 54 9KO C17 H2 SING N N 55 9KO C24 H3 SING N N 56 9KO C24 H4 SING N N 57 9KO C24 H5 SING N N 58 9KO C01 H6 SING N N 59 9KO C01 H7 SING N N 60 9KO C01 H8 SING N N 61 9KO C03 H9 SING N N 62 9KO C04 H10 SING N N 63 9KO C09 H11 SING N N 64 9KO C11 H12 SING N N 65 9KO C19 H13 SING N N 66 9KO C30 H14 SING N N 67 9KO C31 H15 SING N N 68 9KO C34 H16 SING N N 69 9KO C36 H17 SING N N 70 9KO C36 H18 SING N N 71 9KO C37 H19 SING N N 72 9KO C37 H20 SING N N 73 9KO C40 H21 SING N N 74 9KO C40 H22 SING N N 75 9KO C40 H23 SING N N 76 9KO C42 H24 SING N N 77 9KO C42 H25 SING N N 78 9KO C43 H26 SING N N 79 9KO C43 H27 SING N N 80 9KO C45 H28 SING N N 81 9KO C47 H29 SING N N 82 9KO C47 H30 SING N N 83 9KO N06 H31 SING N N 84 9KO N28 H32 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9KO SMILES ACDLabs 12.01 "c6cc(C(F)(F)F)cc(C(=O)Nc1ccc(c(c1)N5C(N(C)c4nc(Nc2cnc(cc2)N3CCN(C(C)=O)CC3)ncc4C5)=O)C)c6" 9KO InChI InChI 1.03 "InChI=1S/C33H32F3N9O3/c1-20-7-8-25(39-30(47)22-5-4-6-24(15-22)33(34,35)36)16-27(20)45-19-23-17-38-31(41-29(23)42(3)32(45)48)40-26-9-10-28(37-18-26)44-13-11-43(12-14-44)21(2)46/h4-10,15-18H,11-14,19H2,1-3H3,(H,39,47)(H,38,40,41)" 9KO InChIKey InChI 1.03 FCMNXGJPIJFWQV-UHFFFAOYSA-N 9KO SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(Cc2cnc(Nc3ccc(nc3)N4CCN(CC4)C(C)=O)nc12)c5cc(NC(=O)c6cccc(c6)C(F)(F)F)ccc5C" 9KO SMILES CACTVS 3.385 "CN1C(=O)N(Cc2cnc(Nc3ccc(nc3)N4CCN(CC4)C(C)=O)nc12)c5cc(NC(=O)c6cccc(c6)C(F)(F)F)ccc5C" 9KO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1N2Cc3cnc(nc3N(C2=O)C)Nc4ccc(nc4)N5CCN(CC5)C(=O)C)NC(=O)c6cccc(c6)C(F)(F)F" 9KO SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1N2Cc3cnc(nc3N(C2=O)C)Nc4ccc(nc4)N5CCN(CC5)C(=O)C)NC(=O)c6cccc(c6)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9KO "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[7-{[6-(4-acetylpiperazin-1-yl)pyridin-3-yl]amino}-1-methyl-2-oxo-1,4-dihydropyrimido[4,5-d]pyrimidin-3(2H)-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide" 9KO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[3-[7-[[6-(4-ethanoylpiperazin-1-yl)pyridin-3-yl]amino]-1-methyl-2-oxidanylidene-4~{H}-pyrimido[4,5-d]pyrimidin-3-yl]-4-methyl-phenyl]-3-(trifluoromethyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9KO "Create component" 2018-05-21 PDBJ 9KO "Initial release" 2018-09-26 RCSB #