data_9KP # _chem_comp.id 9KP _chem_comp.name "(E)-N~6~-[(2E)-1-carboxy-3-(2-carboxyphenyl)prop-2-en-1-ylidene]-L-lysine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H20 N2 O6" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-18 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.351 _chem_comp.one_letter_code K _chem_comp.three_letter_code 9KP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5VTN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9KP C10 C10 C 0 1 N N N N N N 24.943 19.799 64.846 -0.829 -1.981 -0.503 C10 9KP 1 9KP C11 C11 C 0 1 N N N N N N 24.069 19.320 66.060 -1.730 -3.052 -0.001 C11 9KP 2 9KP O13 O13 O 0 1 N N N N N N 23.099 19.949 66.487 -2.823 -2.766 0.443 O13 9KP 3 9KP C15 C15 C 0 1 N N N N N N 23.898 22.177 64.605 -2.501 -0.265 -0.044 C15 9KP 4 9KP C16 C16 C 0 1 Y N N N N N 23.417 23.243 63.609 -3.040 1.090 -0.235 C16 9KP 5 9KP C17 C17 C 0 1 Y N N N N N 22.106 23.692 63.548 -4.344 1.405 0.205 C17 9KP 6 9KP C18 C18 C 0 1 Y N N N N N 21.747 24.677 62.574 -4.839 2.694 0.017 C18 9KP 7 9KP C19 C19 C 0 1 Y N N N N N 22.654 25.235 61.700 -4.057 3.652 -0.596 C19 9KP 8 9KP C20 C20 C 0 1 Y N N N N N 23.971 24.805 61.766 -2.777 3.344 -1.028 C20 9KP 9 9KP C22 C22 C 0 1 N N N N N N 21.011 23.198 64.388 -5.175 0.377 0.859 C22 9KP 10 9KP N N N 0 1 N N N Y Y N 33.177 18.541 62.098 6.087 0.942 -1.437 N 9KP 11 9KP CA CA C 0 1 N N S Y N N 31.825 18.972 61.927 5.629 1.006 -0.043 CA 9KP 12 9KP C C C 0 1 N N N Y N Y 31.691 20.473 61.689 6.819 0.958 0.880 C 9KP 13 9KP O O O 0 1 N N N Y N Y 31.703 21.140 62.663 7.875 0.526 0.482 O 9KP 14 9KP CB CB C 0 1 N N N N N N 30.802 18.463 62.933 4.711 -0.183 0.246 CB 9KP 15 9KP CG CG C 0 1 N N N N N N 29.457 19.065 62.771 3.443 -0.068 -0.602 CG 9KP 16 9KP CD CD C 0 1 N N N N N N 28.327 18.709 63.818 2.525 -1.257 -0.313 CD 9KP 17 9KP CE CE C 0 1 N N N N N N 26.980 19.333 63.484 1.316 -1.208 -1.249 CE 9KP 18 9KP NZ NZ N 0 1 N N N N N N 26.028 19.127 64.556 0.379 -2.277 -0.894 NZ 9KP 19 9KP O12 O12 O 0 1 N N N N N N 24.388 18.292 66.610 -1.335 -4.338 -0.038 O12 9KP 20 9KP C14 C14 C 0 1 N N N N N N 24.425 20.987 64.057 -1.301 -0.592 -0.563 C14 9KP 21 9KP C21 C21 C 0 1 Y N N N N N 24.337 23.832 62.693 -2.264 2.076 -0.848 C21 9KP 22 9KP O23 O23 O 0 1 N N N N N N 21.127 23.138 65.660 -6.460 0.645 1.166 O23 9KP 23 9KP O24 O24 O 0 1 N N N N N N 19.952 22.867 63.794 -4.703 -0.711 1.121 O24 9KP 24 9KP H1 H1 H 0 1 N N N N N N 23.836 22.330 65.672 -3.067 -0.998 0.512 H1 9KP 25 9KP H7 H2 H 0 1 N N N N N N 20.717 24.998 62.522 -5.836 2.943 0.350 H2 9KP 26 9KP H3 H3 H 0 1 N N N N N N 22.349 25.985 60.985 -4.447 4.648 -0.744 H3 9KP 27 9KP H4 H4 H 0 1 N N N N N N 24.711 25.224 61.100 -2.175 4.103 -1.507 H4 9KP 28 9KP H H H 0 1 N N N Y Y N 33.196 17.553 62.249 6.598 0.090 -1.612 H 9KP 29 9KP H2 H7 H 0 1 N Y N Y Y N 33.704 18.763 61.277 5.313 1.038 -2.077 H7 9KP 30 9KP HA H8 H 0 1 N N N Y N N 31.505 18.524 60.975 5.081 1.935 0.117 H8 9KP 31 9KP OXT OXT O 0 1 N Y N Y N Y 31.597 20.877 60.744 6.706 1.396 2.144 OXT 9KP 32 9KP H10 H10 H 0 1 N N N N N N 30.711 17.373 62.815 5.229 -1.110 0.001 H10 9KP 33 9KP H11 H11 H 0 1 N N N N N N 31.166 18.693 63.945 4.442 -0.186 1.303 H11 9KP 34 9KP H12 H12 H 0 1 N N N N N N 29.587 20.157 62.796 2.925 0.860 -0.357 H12 9KP 35 9KP H13 H13 H 0 1 N N N N N N 29.086 18.763 61.781 3.712 -0.065 -1.659 H13 9KP 36 9KP H14 H14 H 0 1 N N N N N N 28.208 17.616 63.846 3.072 -2.186 -0.474 H14 9KP 37 9KP H15 H15 H 0 1 N N N N N N 28.643 19.069 64.808 2.185 -1.210 0.722 H15 9KP 38 9KP H16 H16 H 0 1 N N N N N N 27.114 20.413 63.326 0.820 -0.242 -1.152 H16 9KP 39 9KP H17 H17 H 0 1 N N N N N N 26.590 18.873 62.564 1.648 -1.344 -2.279 H17 9KP 40 9KP H18 H18 H 0 1 N N N N N N 23.797 18.123 67.334 -1.955 -4.998 0.299 H18 9KP 41 9KP H19 H19 H 0 1 N N N N N N 24.463 20.916 62.980 -0.686 0.167 -1.024 H19 9KP 42 9KP H20 H20 H 0 1 N N N N N N 25.367 23.508 62.719 -1.265 1.844 -1.187 H20 9KP 43 9KP H21 H21 H 0 1 N N N N N N 20.316 22.818 66.038 -6.965 -0.060 1.593 H21 9KP 44 9KP HXT HXT H 0 1 N Y N Y N Y 31.527 21.822 60.809 7.497 1.345 2.698 HXT 9KP 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9KP C CA SING N N 1 9KP C O DOUB N N 2 9KP C19 C20 DOUB Y N 3 9KP C19 C18 SING Y N 4 9KP C20 C21 SING Y N 5 9KP CA N SING N N 6 9KP CA CB SING N N 7 9KP C18 C17 DOUB Y N 8 9KP C21 C16 DOUB Y N 9 9KP CG CB SING N N 10 9KP CG CD SING N N 11 9KP CE CD SING N N 12 9KP CE NZ SING N N 13 9KP C17 C16 SING Y N 14 9KP C17 C22 SING N N 15 9KP C16 C15 SING N N 16 9KP O24 C22 DOUB N N 17 9KP C14 C15 DOUB N E 18 9KP C14 C10 SING N N 19 9KP C22 O23 SING N N 20 9KP NZ C10 DOUB N N 21 9KP C10 C11 SING N N 22 9KP C11 O13 DOUB N N 23 9KP C11 O12 SING N N 24 9KP C15 H1 SING N N 25 9KP C18 H7 SING N N 26 9KP C19 H3 SING N N 27 9KP C20 H4 SING N N 28 9KP N H SING N N 29 9KP N H2 SING N N 30 9KP CA HA SING N N 31 9KP C OXT SING N N 32 9KP CB H10 SING N N 33 9KP CB H11 SING N N 34 9KP CG H12 SING N N 35 9KP CG H13 SING N N 36 9KP CD H14 SING N N 37 9KP CD H15 SING N N 38 9KP CE H16 SING N N 39 9KP CE H17 SING N N 40 9KP O12 H18 SING N N 41 9KP C14 H19 SING N N 42 9KP C21 H20 SING N N 43 9KP O23 H21 SING N N 44 9KP OXT HXT SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9KP SMILES ACDLabs 12.01 "C(/C(=O)O)(=N\CCCCC(N)C(=O)O)\C=C\c1c(C(O)=O)cccc1" 9KP InChI InChI 1.03 "InChI=1S/C17H20N2O6/c18-13(16(22)23)7-3-4-10-19-14(17(24)25)9-8-11-5-1-2-6-12(11)15(20)21/h1-2,5-6,8-9,13H,3-4,7,10,18H2,(H,20,21)(H,22,23)(H,24,25)/b9-8+,19-14+/t13-/m0/s1" 9KP InChIKey InChI 1.03 SPDZYZMDISKQIF-OQQJUMBRSA-N 9KP SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCN=C(\C=C\c1ccccc1C(O)=O)C(O)=O)C(O)=O" 9KP SMILES CACTVS 3.385 "N[CH](CCCCN=C(C=Cc1ccccc1C(O)=O)C(O)=O)C(O)=O" 9KP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)/C=C/C(=N\CCCC[C@@H](C(=O)O)N)/C(=O)O)C(=O)O" 9KP SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)C=CC(=NCCCCC(C(=O)O)N)C(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9KP "SYSTEMATIC NAME" ACDLabs 12.01 "(E)-N~6~-[(2E)-1-carboxy-3-(2-carboxyphenyl)prop-2-en-1-ylidene]-L-lysine" 9KP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(~{E},3~{E})-3-[(5~{S})-5-azanyl-6-oxidanyl-6-oxidanylidene-hexyl]imino-4-oxidanyl-4-oxidanylidene-but-1-enyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9KP "Create component" 2017-05-18 RCSB 9KP "Modify linking type" 2017-05-19 RCSB 9KP "Modify parent residue" 2018-01-29 RCSB 9KP "Initial release" 2019-04-10 RCSB 9KP "Modify backbone" 2023-11-03 PDBE #