data_9LF # _chem_comp.id 9LF _chem_comp.name "(2S,12E,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-21-(acetyloxy)-5,6,17,19-tetrahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-9-yl hydroxyacetate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H49 N O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Rifamycin L" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-24 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 755.805 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YSW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9LF C01 C1 C 0 1 N N N 96.974 60.933 271.251 96.974 60.933 271.251 C01 9LF 1 9LF O02 O1 O 0 1 N N N 97.009 61.165 272.636 97.009 61.165 272.636 O02 9LF 2 9LF C03 C2 C 0 1 N N S 96.408 62.356 273.081 96.408 62.356 273.081 C03 9LF 3 9LF C04 C3 C 0 1 N N N 94.863 62.341 272.912 94.863 62.341 272.912 C04 9LF 4 9LF C05 C4 C 0 1 N N N 94.080 63.153 273.696 94.080 63.153 273.696 C05 9LF 5 9LF O06 O2 O 0 1 N N N 92.647 63.169 273.637 92.647 63.169 273.637 O06 9LF 6 9LF C07 C5 C 0 1 N N S 92.004 63.957 272.600 92.004 63.957 272.600 C07 9LF 7 9LF C08 C6 C 0 1 N N N 90.546 63.592 272.470 90.546 63.592 272.470 C08 9LF 8 9LF O09 O3 O 0 1 N N N 92.042 65.378 273.016 92.042 65.378 273.016 O09 9LF 9 9LF C10 C7 C 0 1 Y N N 93.312 65.891 272.292 93.312 65.891 272.292 C10 9LF 10 9LF C11 C8 C 0 1 Y N N 94.090 67.018 272.545 94.090 67.018 272.545 C11 9LF 11 9LF C12 C9 C 0 1 N N N 93.670 67.901 273.675 93.670 67.901 273.675 C12 9LF 12 9LF C13 C10 C 0 1 Y N N 95.207 67.296 271.785 95.207 67.296 271.785 C13 9LF 13 9LF O14 O4 O 0 1 N N N 96.022 68.431 271.999 96.022 68.431 271.999 O14 9LF 14 9LF C15 C11 C 0 1 Y N N 95.530 66.377 270.733 95.530 66.377 270.733 C15 9LF 15 9LF C16 C12 C 0 1 Y N N 96.660 66.726 269.998 96.660 66.726 269.998 C16 9LF 16 9LF O17 O5 O 0 1 N N N 97.396 67.897 270.308 97.396 67.897 270.308 O17 9LF 17 9LF C18 C13 C 0 1 Y N N 97.072 65.897 268.961 97.072 65.897 268.961 C18 9LF 18 9LF C19 C14 C 0 1 Y N N 96.349 64.721 268.632 96.349 64.721 268.632 C19 9LF 19 9LF C20 C15 C 0 1 Y N N 95.195 64.368 269.366 95.195 64.368 269.366 C20 9LF 20 9LF O21 O6 O 0 1 N N N 94.450 63.188 269.034 94.450 63.188 269.034 O21 9LF 21 9LF C22 C16 C 0 1 N N N 93.415 63.320 268.022 93.415 63.320 268.022 C22 9LF 22 9LF O23 O7 O 0 1 N N N 92.501 64.061 268.154 92.501 64.061 268.154 O23 9LF 23 9LF C24 C17 C 0 1 N N N 93.416 62.501 266.709 93.416 62.501 266.709 C24 9LF 24 9LF O25 O8 O 0 1 N N N 92.809 63.283 265.709 92.809 63.283 265.709 O25 9LF 25 9LF C26 C18 C 0 1 Y N N 94.786 65.230 270.455 94.786 65.230 270.455 C26 9LF 26 9LF C27 C19 C 0 1 Y N N 93.629 64.971 271.243 93.629 64.971 271.243 C27 9LF 27 9LF C28 C20 C 0 1 N N N 92.641 63.944 271.336 92.641 63.944 271.336 C28 9LF 28 9LF O29 O9 O 0 1 N N N 92.374 63.136 270.514 92.374 63.136 270.514 O29 9LF 29 9LF N30 N1 N 0 1 N N N 98.274 66.387 268.285 98.274 66.387 268.285 N30 9LF 30 9LF C31 C21 C 0 1 N N N 99.646 65.953 268.576 99.646 65.953 268.576 C31 9LF 31 9LF O32 O10 O 0 1 N N N 100.507 66.471 267.945 100.507 66.471 267.945 O32 9LF 32 9LF C33 C22 C 0 1 N N N 100.016 64.828 269.595 100.016 64.828 269.595 C33 9LF 33 9LF C34 C23 C 0 1 N N N 101.430 64.299 269.504 101.430 64.299 269.504 C34 9LF 34 9LF C35 C24 C 0 1 N N N 99.194 64.322 270.537 99.194 64.322 270.537 C35 9LF 35 9LF C36 C25 C 0 1 N N N 99.707 63.159 271.472 99.707 63.159 271.472 C36 9LF 36 9LF C37 C26 C 0 1 N N N 100.999 63.122 271.910 100.999 63.122 271.910 C37 9LF 37 9LF C38 C27 C 0 1 N N S 101.717 62.081 272.783 101.717 62.081 272.783 C38 9LF 38 9LF C39 C28 C 0 1 N N N 101.449 60.649 272.332 101.449 60.649 272.332 C39 9LF 39 9LF C40 C29 C 0 1 N N S 101.413 62.392 274.274 101.413 62.392 274.274 C40 9LF 40 9LF O41 O11 O 0 1 N N N 102.490 63.108 274.750 102.490 63.108 274.750 O41 9LF 41 9LF C42 C30 C 0 1 N N R 101.231 61.163 275.162 101.231 61.163 275.162 C42 9LF 42 9LF C43 C31 C 0 1 N N N 101.096 61.637 276.593 101.096 61.637 276.593 C43 9LF 43 9LF C44 C32 C 0 1 N N R 99.976 60.351 274.776 99.976 60.351 274.776 C44 9LF 44 9LF O45 O12 O 0 1 N N N 100.122 59.101 275.367 100.122 59.101 275.367 O45 9LF 45 9LF C46 C33 C 0 1 N N R 98.598 60.912 275.216 98.598 60.912 275.216 C46 9LF 46 9LF C47 C34 C 0 1 N N N 98.357 60.700 276.722 98.357 60.700 276.722 C47 9LF 47 9LF C48 C35 C 0 1 N N S 98.255 62.364 274.749 98.255 62.364 274.749 C48 9LF 48 9LF O49 O13 O 0 1 N N N 98.735 63.407 275.576 98.735 63.407 275.576 O49 9LF 49 9LF C50 C36 C 0 1 N N N 98.359 64.750 275.247 98.359 64.750 275.247 C50 9LF 50 9LF C51 C37 C 0 1 N N N 97.509 65.559 276.232 97.509 65.559 276.232 C51 9LF 51 9LF O52 O14 O 0 1 N N N 98.698 65.261 274.227 98.698 65.261 274.227 O52 9LF 52 9LF C53 C38 C 0 1 N N R 96.730 62.521 274.575 96.730 62.521 274.575 C53 9LF 53 9LF C54 C39 C 0 1 N N N 95.905 61.576 275.466 95.905 61.576 275.466 C54 9LF 54 9LF H1 H1 H 0 1 N N N 97.471 59.978 271.026 97.471 59.978 271.026 H1 9LF 55 9LF H2 H2 H 0 1 N N N 95.928 60.890 270.913 95.928 60.890 270.913 H2 9LF 56 9LF H3 H3 H 0 1 N N N 97.495 61.749 270.729 97.495 61.749 270.729 H3 9LF 57 9LF H4 H4 H 0 1 N N N 96.812 63.221 272.534 96.812 63.221 272.534 H4 9LF 58 9LF H5 H5 H 0 1 N N N 94.406 61.693 272.179 94.406 61.693 272.179 H5 9LF 59 9LF H6 H6 H 0 1 N N N 94.570 63.815 274.395 94.570 63.815 274.395 H6 9LF 60 9LF H7 H7 H 0 1 N N N 90.073 63.609 273.463 90.073 63.609 273.463 H7 9LF 61 9LF H8 H8 H 0 1 N N N 90.044 64.317 271.813 90.044 64.317 271.813 H8 9LF 62 9LF H9 H9 H 0 1 N N N 90.458 62.584 272.039 90.458 62.584 272.039 H9 9LF 63 9LF H10 H10 H 0 1 N N N 92.981 68.673 273.301 92.981 68.673 273.301 H10 9LF 64 9LF H11 H11 H 0 1 N N N 93.163 67.298 274.443 93.163 67.298 274.443 H11 9LF 65 9LF H12 H12 H 0 1 N N N 94.557 68.382 274.113 94.557 68.382 274.113 H12 9LF 66 9LF H13 H13 H 0 1 N N N 95.678 68.936 272.726 95.678 68.936 272.726 H13 9LF 67 9LF H14 H14 H 0 1 N N N 96.984 68.347 271.036 96.984 68.347 271.036 H14 9LF 68 9LF H15 H15 H 0 1 N N N 96.682 64.094 267.818 96.682 64.094 267.818 H15 9LF 69 9LF H16 H16 H 0 1 N N N 92.849 61.569 266.850 92.849 61.569 266.850 H16 9LF 70 9LF H17 H17 H 0 1 N N N 94.450 62.261 266.419 94.450 62.261 266.419 H17 9LF 71 9LF H18 H18 H 0 1 N N N 92.356 64.015 266.110 92.356 64.015 266.110 H18 9LF 72 9LF H19 H19 H 0 1 N N N 98.151 67.072 267.567 98.151 67.072 267.567 H19 9LF 73 9LF H20 H20 H 0 1 N N N 101.579 63.517 270.263 101.579 63.516 270.263 H20 9LF 74 9LF H21 H21 H 0 1 N N N 101.599 63.876 268.503 101.599 63.876 268.503 H21 9LF 75 9LF H22 H22 H 0 1 N N N 102.141 65.120 269.680 102.141 65.120 269.680 H22 9LF 76 9LF H23 H23 H 0 1 N N N 98.192 64.710 270.650 98.192 64.710 270.651 H23 9LF 77 9LF H24 H24 H 0 1 N N N 99.023 62.378 271.771 99.023 62.378 271.771 H24 9LF 78 9LF H25 H25 H 0 1 N N N 101.612 63.953 271.594 101.612 63.953 271.594 H25 9LF 79 9LF H26 H26 H 0 1 N N N 102.795 62.254 272.648 102.795 62.254 272.648 H26 9LF 80 9LF H27 H27 H 0 1 N N N 101.986 59.950 272.990 101.986 59.950 272.990 H27 9LF 81 9LF H28 H28 H 0 1 N N N 100.369 60.445 272.383 100.369 60.445 272.383 H28 9LF 82 9LF H29 H29 H 0 1 N N N 101.798 60.519 271.297 101.798 60.519 271.297 H29 9LF 83 9LF H30 H30 H 0 1 N N N 100.495 62.996 274.319 100.495 62.996 274.319 H30 9LF 84 9LF H31 H31 H 0 1 N N N 102.349 63.323 275.665 102.349 63.323 275.665 H31 9LF 85 9LF H32 H32 H 0 1 N N N 102.117 60.517 275.073 102.117 60.517 275.073 H32 9LF 86 9LF H33 H33 H 0 1 N N N 100.963 60.769 277.256 100.963 60.770 277.256 H33 9LF 87 9LF H34 H34 H 0 1 N N N 102.004 62.186 276.884 102.004 62.186 276.884 H34 9LF 88 9LF H35 H35 H 0 1 N N N 100.223 62.301 276.678 100.223 62.301 276.678 H35 9LF 89 9LF H36 H36 H 0 1 N N N 99.963 60.249 273.681 99.963 60.249 273.681 H36 9LF 90 9LF H37 H37 H 0 1 N N N 99.369 58.561 275.157 99.369 58.561 275.157 H37 9LF 91 9LF H38 H38 H 0 1 N N N 97.857 60.272 274.714 97.857 60.272 274.715 H38 9LF 92 9LF H39 H39 H 0 1 N N N 98.614 59.665 276.993 98.614 59.665 276.993 H39 9LF 93 9LF H40 H40 H 0 1 N N N 98.987 61.396 277.296 98.987 61.396 277.296 H40 9LF 94 9LF H41 H41 H 0 1 N N N 97.298 60.887 276.954 97.298 60.887 276.954 H41 9LF 95 9LF H42 H42 H 0 1 N N N 98.701 62.484 273.750 98.701 62.484 273.750 H42 9LF 96 9LF H43 H43 H 0 1 N N N 97.326 66.563 275.821 97.326 66.563 275.821 H43 9LF 97 9LF H44 H44 H 0 1 N N N 96.548 65.048 276.393 96.548 65.048 276.393 H44 9LF 98 9LF H45 H45 H 0 1 N N N 98.042 65.647 277.190 98.043 65.647 277.190 H45 9LF 99 9LF H46 H46 H 0 1 N N N 96.470 63.552 274.857 96.470 63.552 274.858 H46 9LF 100 9LF H47 H47 H 0 1 N N N 96.175 61.736 276.520 96.175 61.736 276.520 H47 9LF 101 9LF H48 H48 H 0 1 N N N 94.834 61.783 275.326 94.834 61.783 275.327 H48 9LF 102 9LF H49 H49 H 0 1 N N N 96.116 60.533 275.188 96.116 60.533 275.188 H49 9LF 103 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9LF O25 C24 SING N N 1 9LF C24 C22 SING N N 2 9LF O32 C31 DOUB N N 3 9LF C22 O23 DOUB N N 4 9LF C22 O21 SING N N 5 9LF N30 C31 SING N N 6 9LF N30 C18 SING N N 7 9LF C31 C33 SING N N 8 9LF C19 C18 DOUB Y N 9 9LF C19 C20 SING Y N 10 9LF C18 C16 SING Y N 11 9LF O21 C20 SING N N 12 9LF C20 C26 DOUB Y N 13 9LF C34 C33 SING N N 14 9LF C33 C35 DOUB N E 15 9LF C16 O17 SING N N 16 9LF C16 C15 DOUB Y N 17 9LF C26 C15 SING Y N 18 9LF C26 C27 SING Y N 19 9LF O29 C28 DOUB N N 20 9LF C35 C36 SING N N 21 9LF C15 C13 SING Y N 22 9LF C27 C28 SING N N 23 9LF C27 C10 DOUB Y N 24 9LF C01 O02 SING N N 25 9LF C28 C07 SING N N 26 9LF C36 C37 DOUB N E 27 9LF C13 O14 SING N N 28 9LF C13 C11 DOUB Y N 29 9LF C37 C38 SING N N 30 9LF C10 C11 SING Y N 31 9LF C10 O09 SING N N 32 9LF C39 C38 SING N N 33 9LF C08 C07 SING N N 34 9LF C11 C12 SING N N 35 9LF C07 O09 SING N N 36 9LF C07 O06 SING N N 37 9LF O02 C03 SING N N 38 9LF C38 C40 SING N N 39 9LF C04 C03 SING N N 40 9LF C04 C05 DOUB N E 41 9LF C03 C53 SING N N 42 9LF O06 C05 SING N N 43 9LF O52 C50 DOUB N N 44 9LF C40 O41 SING N N 45 9LF C40 C42 SING N N 46 9LF C53 C48 SING N N 47 9LF C53 C54 SING N N 48 9LF C48 C46 SING N N 49 9LF C48 O49 SING N N 50 9LF C44 C42 SING N N 51 9LF C44 C46 SING N N 52 9LF C44 O45 SING N N 53 9LF C42 C43 SING N N 54 9LF C46 C47 SING N N 55 9LF C50 O49 SING N N 56 9LF C50 C51 SING N N 57 9LF C01 H1 SING N N 58 9LF C01 H2 SING N N 59 9LF C01 H3 SING N N 60 9LF C03 H4 SING N N 61 9LF C04 H5 SING N N 62 9LF C05 H6 SING N N 63 9LF C08 H7 SING N N 64 9LF C08 H8 SING N N 65 9LF C08 H9 SING N N 66 9LF C12 H10 SING N N 67 9LF C12 H11 SING N N 68 9LF C12 H12 SING N N 69 9LF O14 H13 SING N N 70 9LF O17 H14 SING N N 71 9LF C19 H15 SING N N 72 9LF C24 H16 SING N N 73 9LF C24 H17 SING N N 74 9LF O25 H18 SING N N 75 9LF N30 H19 SING N N 76 9LF C34 H20 SING N N 77 9LF C34 H21 SING N N 78 9LF C34 H22 SING N N 79 9LF C35 H23 SING N N 80 9LF C36 H24 SING N N 81 9LF C37 H25 SING N N 82 9LF C38 H26 SING N N 83 9LF C39 H27 SING N N 84 9LF C39 H28 SING N N 85 9LF C39 H29 SING N N 86 9LF C40 H30 SING N N 87 9LF O41 H31 SING N N 88 9LF C42 H32 SING N N 89 9LF C43 H33 SING N N 90 9LF C43 H34 SING N N 91 9LF C43 H35 SING N N 92 9LF C44 H36 SING N N 93 9LF O45 H37 SING N N 94 9LF C46 H38 SING N N 95 9LF C47 H39 SING N N 96 9LF C47 H40 SING N N 97 9LF C47 H41 SING N N 98 9LF C48 H42 SING N N 99 9LF C51 H43 SING N N 100 9LF C51 H44 SING N N 101 9LF C51 H45 SING N N 102 9LF C53 H46 SING N N 103 9LF C54 H47 SING N N 104 9LF C54 H48 SING N N 105 9LF C54 H49 SING N N 106 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9LF SMILES ACDLabs 12.01 "COC1C(C(C(C(C(C(C(C=CC=C(C(Nc4c(c3c(c(c2OC(OC=C1)(C)C(c2c3c(c4)OC(=O)CO)=O)C)O)O)=O)C)C)O)C)O)C)OC(C)=O)C" 9LF InChI InChI 1.03 "InChI=1S/C39H49NO14/c1-17-11-10-12-18(2)38(49)40-24-15-26(53-27(43)16-41)28-29(34(24)47)33(46)22(6)36-30(28)37(48)39(8,54-36)51-14-13-25(50-9)19(3)35(52-23(7)42)21(5)32(45)20(4)31(17)44/h10-15,17,19-21,25,31-32,35,41,44-47H,16H2,1-9H3,(H,40,49)/b11-10+,14-13+,18-12+/t17-,19+,20+,21+,25-,31-,32+,35+,39-/m0/s1" 9LF InChIKey InChI 1.03 OCUBKDJIPNISSD-WPPPCPPGSA-N 9LF SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1\C=C\O[C@@]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)\C(=C\C=C\[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)C)cc(OC(=O)CO)c4c3C2=O" 9LF SMILES CACTVS 3.385 "CO[CH]1C=CO[C]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)C(=CC=C[CH](C)[CH](O)[CH](C)[CH](O)[CH](C)[CH](OC(C)=O)[CH]1C)C)cc(OC(=O)CO)c4c3C2=O" 9LF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c2c3c(cc(c2O)NC(=O)/C(=C/C=C/[C@@H]([C@@H]([C@H]([C@H]([C@H]([C@@H]([C@@H]([C@H](/C=C/O[C@@]4(C(=O)c3c1O4)C)OC)C)OC(=O)C)C)O)C)O)C)/C)OC(=O)CO)O" 9LF SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(c2c3c(cc(c2O)NC(=O)C(=CC=CC(C(C(C(C(C(C(C(C=COC4(C(=O)c3c1O4)C)OC)C)OC(=O)C)C)O)C)O)C)C)OC(=O)CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9LF "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,12E,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-21-(acetyloxy)-5,6,17,19-tetrahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-9-yl hydroxyacetate" 9LF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(4~{E},6~{E},8~{S},9~{S},10~{R},11~{R},12~{R},13~{S},14~{R},15~{S},16~{E},19~{S})-13-acetyloxy-15-methoxy-4,8,10,12,14,19,28-heptamethyl-9,11,25,27-tetrakis(oxidanyl)-3,20-bis(oxidanylidene)-18,30-dioxa-2-azatetracyclo[17.6.5.0^{21,29}.0^{22,26}]triaconta-1(24),4,6,16,21(29),22,25,27-octaen-23-yl] 2-oxidanylethanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9LF "Create component" 2018-05-24 PDBJ 9LF "Modify synonyms" 2018-06-07 PDBJ 9LF "Initial release" 2018-07-04 RCSB 9LF "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9LF _pdbx_chem_comp_synonyms.name "Rifamycin L" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##