data_9PB # _chem_comp.id 9PB _chem_comp.name ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-(naphthalen-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H43 N3 O16" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-20 _chem_comp.pdbx_modified_date 2018-04-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 725.694 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5O9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PB C4 C1 C 0 1 N N R 16.176 13.573 21.947 4.138 0.508 2.699 C4 9PB 1 9PB C5 C2 C 0 1 N N R 15.740 12.140 22.152 2.643 0.752 2.918 C5 9PB 2 9PB C6 C3 C 0 1 N N N 16.777 11.411 23.028 2.401 1.161 4.373 C6 9PB 3 9PB C3 C4 C 0 1 N N S 15.157 14.273 21.106 4.379 0.158 1.227 C3 9PB 4 9PB CBS C5 C 0 1 Y N N 3.637 7.483 16.923 -8.356 -1.649 -0.535 CBS 9PB 5 9PB CBT C6 C 0 1 Y N N 3.215 7.989 15.694 -8.934 -1.974 0.705 CBT 9PB 6 9PB CBY C7 C 0 1 Y N N 3.452 7.274 14.527 -10.004 -1.229 1.228 CBY 9PB 7 9PB CBX C8 C 0 1 Y N N 3.031 7.782 13.301 -10.540 -1.573 2.432 CBX 9PB 8 9PB CBW C9 C 0 1 Y N N 2.368 9.002 13.235 -10.042 -2.655 3.155 CBW 9PB 9 9PB CBV C10 C 0 1 Y N N 2.126 9.720 14.399 -9.007 -3.400 2.679 CBV 9PB 10 9PB CBU C11 C 0 1 Y N N 2.551 9.213 15.621 -8.428 -3.075 1.440 CBU 9PB 11 9PB CBP C12 C 0 1 Y N N 2.305 9.935 16.778 -7.358 -3.820 0.916 CBP 9PB 12 9PB CBQ C13 C 0 1 Y N N 2.728 9.434 18.004 -6.824 -3.477 -0.287 CBQ 9PB 13 9PB CBR C14 C 0 1 Y N N 3.386 8.212 18.084 -7.321 -2.394 -1.010 CBR 9PB 14 9PB CBN C15 C 0 1 N N N 3.794 7.758 19.337 -6.708 -2.047 -2.342 CBN 9PB 15 9PB OBO O1 O 0 1 N N N 5.033 8.406 19.679 -5.640 -1.117 -2.147 OBO 9PB 16 9PB CBM C16 C 0 1 N N N 5.312 8.213 21.050 -4.987 -0.720 -3.355 CBM 9PB 17 9PB CBL C17 C 0 1 Y N N 6.528 9.032 21.476 -3.885 0.256 -3.032 CBL 9PB 18 9PB CBH C18 C 0 1 Y N N 7.699 8.568 21.878 -3.535 0.705 -1.804 CBH 9PB 19 9PB NBK N1 N 0 1 Y N N 6.569 10.351 21.576 -3.057 0.844 -3.903 NBK 9PB 20 9PB NBJ N2 N 0 1 Y N N 7.688 10.669 21.962 -2.251 1.611 -3.257 NBJ 9PB 21 9PB NBI N3 N 0 1 Y N N 8.427 9.679 22.082 -2.502 1.558 -1.996 NBI 9PB 22 9PB CAG C19 C 0 1 N N R 9.748 9.902 22.674 -1.789 2.292 -0.947 CAG 9PB 23 9PB CAK C20 C 0 1 N N R 10.314 11.231 22.300 -0.290 1.995 -1.045 CAK 9PB 24 9PB OBA O2 O 0 1 N N N 10.598 11.096 20.904 -0.064 0.603 -0.820 OBA 9PB 25 9PB OAY O3 O 0 1 N N N 9.558 9.869 24.072 -2.008 3.694 -1.115 OAY 9PB 26 9PB CAI C21 C 0 1 N N R 10.778 10.068 24.821 -1.375 4.506 -0.124 CAI 9PB 27 9PB CAJ C22 C 0 1 N N N 10.246 10.342 26.232 -1.699 5.978 -0.386 CAJ 9PB 28 9PB OBB O4 O 0 1 N N N 9.435 9.272 26.649 -3.101 6.195 -0.213 OBB 9PB 29 9PB CAH C23 C 0 1 N N R 11.359 11.375 24.448 0.141 4.298 -0.188 CAH 9PB 30 9PB OAZ O5 O 0 1 N N N 12.590 11.510 25.177 0.772 5.065 0.840 OAZ 9PB 31 9PB CAL C24 C 0 1 N N S 11.640 11.379 22.953 0.454 2.813 0.016 CAL 9PB 32 9PB O1 O6 O 0 1 N N N 12.195 12.662 22.608 1.860 2.598 -0.116 O1 9PB 33 9PB C1 C25 C 0 1 N N S 13.462 12.725 21.980 2.357 1.505 0.659 C1 9PB 34 9PB C2 C26 C 0 1 N N R 13.791 14.203 21.778 3.840 1.291 0.349 C2 9PB 35 9PB O2 O7 O 0 1 N N N 12.764 14.767 20.920 3.995 0.942 -1.028 O2 9PB 36 9PB O5 O8 O 0 1 N N N 14.465 12.079 22.800 2.200 1.797 2.049 O5 9PB 37 9PB O6 O9 O 0 1 N N N 16.858 12.072 24.278 0.996 1.276 4.608 O6 9PB 38 9PB O4 O10 O 0 1 N N N 17.378 13.513 21.166 4.572 -0.574 3.526 O4 9PB 39 9PB O3 O11 O 0 1 N N N 15.535 15.618 20.895 5.781 -0.000 0.997 O3 9PB 40 9PB CAM C27 C 0 1 N N S 15.234 16.229 19.675 6.098 -0.922 -0.048 CAM 9PB 41 9PB OBD O12 O 0 1 N N N 15.994 15.489 18.747 5.681 -2.235 0.332 OBD 9PB 42 9PB CAO C28 C 0 1 N N R 15.803 16.001 17.406 5.929 -3.235 -0.659 CAO 9PB 43 9PB CAP C29 C 0 1 N N N 16.554 15.035 16.450 5.418 -4.587 -0.157 CAP 9PB 44 9PB OBG O13 O 0 1 N N N 17.951 14.942 16.797 3.997 -4.538 -0.018 OBG 9PB 45 9PB CAN C30 C 0 1 N N S 16.264 17.469 17.371 7.434 -3.325 -0.925 CAN 9PB 46 9PB OBE O14 O 0 1 N N N 15.972 17.990 16.072 7.680 -4.283 -1.956 OBE 9PB 47 9PB CAR C31 C 0 1 N N S 15.463 18.298 18.362 7.948 -1.952 -1.370 CAR 9PB 48 9PB OBC O15 O 0 1 N N N 16.040 19.593 18.443 9.365 -2.008 -1.550 OBC 9PB 49 9PB CAQ C32 C 0 1 N N R 15.703 17.687 19.718 7.610 -0.919 -0.291 CAQ 9PB 50 9PB OBF O16 O 0 1 N N N 15.007 18.362 20.781 8.020 0.379 -0.726 OBF 9PB 51 9PB H1 H1 H 0 1 N N N 16.325 14.085 22.909 4.696 1.409 2.955 H1 9PB 52 9PB H2 H2 H 0 1 N N N 15.691 11.638 21.175 2.089 -0.161 2.701 H2 9PB 53 9PB H3 H3 H 0 1 N N N 16.465 10.367 23.180 2.820 0.406 5.037 H3 9PB 54 9PB H4 H4 H 0 1 N N N 17.759 11.432 22.534 2.882 2.121 4.565 H4 9PB 55 9PB H5 H5 H 0 1 N N N 15.088 13.754 20.139 3.862 -0.770 0.983 H5 9PB 56 9PB H6 H6 H 0 1 N N N 4.153 6.536 16.975 -8.734 -0.816 -1.108 H6 9PB 57 9PB H7 H7 H 0 1 N N N 3.963 6.324 14.571 -10.400 -0.387 0.679 H7 9PB 58 9PB H8 H8 H 0 1 N N N 3.221 7.225 12.396 -11.362 -0.999 2.832 H8 9PB 59 9PB H9 H9 H 0 1 N N N 2.042 9.390 12.281 -10.485 -2.907 4.107 H9 9PB 60 9PB H10 H10 H 0 1 N N N 1.610 10.668 14.355 -8.631 -4.235 3.251 H10 9PB 61 9PB H11 H11 H 0 1 N N N 1.788 10.882 16.728 -6.962 -4.661 1.466 H11 9PB 62 9PB H12 H12 H 0 1 N N N 2.543 10.001 18.905 -6.002 -4.051 -0.687 H12 9PB 63 9PB H13 H13 H 0 1 N N N 3.028 8.003 20.087 -6.320 -2.951 -2.811 H13 9PB 64 9PB H14 H14 H 0 1 N N N 3.942 6.668 19.306 -7.465 -1.600 -2.986 H14 9PB 65 9PB H15 H15 H 0 1 N N N 4.440 8.526 21.643 -4.564 -1.597 -3.844 H15 9PB 66 9PB H16 H16 H 0 1 N N N 5.514 7.147 21.230 -5.709 -0.246 -4.019 H16 9PB 67 9PB H17 H17 H 0 1 N N N 7.999 7.539 22.011 -3.988 0.437 -0.862 H17 9PB 68 9PB H18 H18 H 0 1 N N N 10.439 9.107 22.357 -2.159 1.981 0.030 H18 9PB 69 9PB H19 H19 H 0 1 N N N 9.631 12.062 22.532 0.071 2.269 -2.036 H19 9PB 70 9PB H20 H20 H 0 1 N N N 10.967 11.907 20.576 -0.510 0.024 -1.453 H20 9PB 71 9PB H21 H21 H 0 1 N N N 11.488 9.229 24.778 -1.739 4.224 0.864 H21 9PB 72 9PB H22 H22 H 0 1 N N N 11.092 10.452 26.927 -1.146 6.603 0.315 H22 9PB 73 9PB H23 H23 H 0 1 N N N 9.654 11.269 26.226 -1.415 6.237 -1.406 H23 9PB 74 9PB H24 H24 H 0 1 N N N 9.107 9.445 27.524 -3.380 7.108 -0.363 H24 9PB 75 9PB H25 H25 H 0 1 N N N 10.662 12.189 24.698 0.512 4.620 -1.161 H25 9PB 76 9PB H26 H26 H 0 1 N N N 12.408 11.507 26.109 0.612 6.016 0.776 H26 9PB 77 9PB H27 H27 H 0 1 N N N 12.313 10.553 22.681 0.128 2.504 1.009 H27 9PB 78 9PB H28 H28 H 0 1 N N N 13.420 12.238 20.995 1.799 0.602 0.412 H28 9PB 79 9PB H29 H29 H 0 1 N N N 13.822 14.718 22.750 4.392 2.207 0.558 H29 9PB 80 9PB H30 H30 H 0 1 N N N 11.922 14.714 21.356 3.673 1.617 -1.643 H30 9PB 81 9PB H31 H31 H 0 1 N N N 17.495 11.632 24.829 0.769 1.533 5.512 H31 9PB 82 9PB H32 H32 H 0 1 N N N 18.058 13.074 21.663 4.444 -0.421 4.472 H32 9PB 83 9PB H33 H33 H 0 1 N N N 14.159 16.187 19.448 5.583 -0.627 -0.962 H33 9PB 84 9PB H34 H34 H 0 1 N N N 14.733 15.970 17.151 5.411 -2.970 -1.580 H34 9PB 85 9PB H35 H35 H 0 1 N N N 16.464 15.408 15.419 5.687 -5.365 -0.872 H35 9PB 86 9PB H36 H36 H 0 1 N N N 16.099 14.036 16.519 5.871 -4.811 0.809 H36 9PB 87 9PB H37 H37 H 0 1 N N N 18.387 14.347 16.199 3.604 -5.363 0.298 H37 9PB 88 9PB H38 H38 H 0 1 N N N 17.338 17.532 17.601 7.948 -3.629 -0.014 H38 9PB 89 9PB H39 H39 H 0 1 N N N 16.248 18.898 16.025 8.615 -4.392 -2.178 H39 9PB 90 9PB H40 H40 H 0 1 N N N 14.394 18.315 18.105 7.471 -1.670 -2.309 H40 9PB 91 9PB H41 H41 H 0 1 N N N 15.548 20.122 19.060 9.758 -1.171 -1.832 H41 9PB 92 9PB H42 H42 H 0 1 N N N 16.784 17.697 19.922 8.127 -1.174 0.634 H42 9PB 93 9PB H43 H43 H 0 1 N N N 15.197 17.933 21.607 7.832 1.085 -0.093 H43 9PB 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PB CBW CBX DOUB Y N 1 9PB CBW CBV SING Y N 2 9PB CBX CBY SING Y N 3 9PB CBV CBU DOUB Y N 4 9PB CBY CBT DOUB Y N 5 9PB CBU CBT SING Y N 6 9PB CBU CBP SING Y N 7 9PB CBT CBS SING Y N 8 9PB OBE CAN SING N N 9 9PB CAP OBG SING N N 10 9PB CAP CAO SING N N 11 9PB CBP CBQ DOUB Y N 12 9PB CBS CBR DOUB Y N 13 9PB CAN CAO SING N N 14 9PB CAN CAR SING N N 15 9PB CAO OBD SING N N 16 9PB CBQ CBR SING Y N 17 9PB CBR CBN SING N N 18 9PB CAR OBC SING N N 19 9PB CAR CAQ SING N N 20 9PB OBD CAM SING N N 21 9PB CBN OBO SING N N 22 9PB CAM CAQ SING N N 23 9PB CAM O3 SING N N 24 9PB OBO CBM SING N N 25 9PB CAQ OBF SING N N 26 9PB O3 C3 SING N N 27 9PB OBA CAK SING N N 28 9PB O2 C2 SING N N 29 9PB CBM CBL SING N N 30 9PB C3 C2 SING N N 31 9PB C3 C4 SING N N 32 9PB O4 C4 SING N N 33 9PB CBL NBK SING Y N 34 9PB CBL CBH DOUB Y N 35 9PB NBK NBJ DOUB Y N 36 9PB C2 C1 SING N N 37 9PB CBH NBI SING Y N 38 9PB C4 C5 SING N N 39 9PB NBJ NBI SING Y N 40 9PB C1 O1 SING N N 41 9PB C1 O5 SING N N 42 9PB NBI CAG SING N N 43 9PB C5 O5 SING N N 44 9PB C5 C6 SING N N 45 9PB CAK CAG SING N N 46 9PB CAK CAL SING N N 47 9PB O1 CAL SING N N 48 9PB CAG OAY SING N N 49 9PB CAL CAH SING N N 50 9PB C6 O6 SING N N 51 9PB OAY CAI SING N N 52 9PB CAH CAI SING N N 53 9PB CAH OAZ SING N N 54 9PB CAI CAJ SING N N 55 9PB CAJ OBB SING N N 56 9PB C4 H1 SING N N 57 9PB C5 H2 SING N N 58 9PB C6 H3 SING N N 59 9PB C6 H4 SING N N 60 9PB C3 H5 SING N N 61 9PB CBS H6 SING N N 62 9PB CBY H7 SING N N 63 9PB CBX H8 SING N N 64 9PB CBW H9 SING N N 65 9PB CBV H10 SING N N 66 9PB CBP H11 SING N N 67 9PB CBQ H12 SING N N 68 9PB CBN H13 SING N N 69 9PB CBN H14 SING N N 70 9PB CBM H15 SING N N 71 9PB CBM H16 SING N N 72 9PB CBH H17 SING N N 73 9PB CAG H18 SING N N 74 9PB CAK H19 SING N N 75 9PB OBA H20 SING N N 76 9PB CAI H21 SING N N 77 9PB CAJ H22 SING N N 78 9PB CAJ H23 SING N N 79 9PB OBB H24 SING N N 80 9PB CAH H25 SING N N 81 9PB OAZ H26 SING N N 82 9PB CAL H27 SING N N 83 9PB C1 H28 SING N N 84 9PB C2 H29 SING N N 85 9PB O2 H30 SING N N 86 9PB O6 H31 SING N N 87 9PB O4 H32 SING N N 88 9PB CAM H33 SING N N 89 9PB CAO H34 SING N N 90 9PB CAP H35 SING N N 91 9PB CAP H36 SING N N 92 9PB OBG H37 SING N N 93 9PB CAN H38 SING N N 94 9PB OBE H39 SING N N 95 9PB CAR H40 SING N N 96 9PB OBC H41 SING N N 97 9PB CAQ H42 SING N N 98 9PB OBF H43 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PB InChI InChI 1.03 ;InChI=1S/C32H43N3O16/c36-9-18-21(39)24(42)25(43)31(48-18)51-29-23(41)20(11-38)49-32(27(29)45)50-28-22(40)19(10-37)47-30(26(28)44)35-8-17(33-34-35)13-46-12-14-5-6-15-3-1-2-4-16(15)7-14/h1-8,18-32,36-45H,9-13H2/t18-,19-,20-,21-,22-,23-,24+,25-,26-,27-,28+,29+,30-,31+,32+/m1/s1 ; 9PB InChIKey InChI 1.03 INTPLNBRTDNBOM-DGUZUYFASA-N 9PB SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(COCc5ccc6ccccc6c5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" 9PB SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(COCc5ccc6ccccc6c5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O" 9PB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)COCc3cn(nn3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O)O" 9PB SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)COCc3cn(nn3)C4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)OC6C(C(C(C(O6)CO)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9PB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-(naphthalen-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PB "Create component" 2017-06-20 RCSB 9PB "Initial release" 2018-05-02 RCSB #