data_9PD # _chem_comp.id 9PD _chem_comp.name "Dodecyldimethylphosphine oxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H31 O P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms APO-12 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PD C01 C1 C 0 1 N N N -13.814 -27.199 -23.101 -9.533 0.561 0.111 C01 9PD 1 9PD C02 C2 C 0 1 N N N -14.364 -28.080 -24.250 -8.320 -0.350 -0.087 C02 9PD 2 9PD C03 C3 C 0 1 N N N -13.765 -29.495 -24.395 -7.037 0.463 0.097 C03 9PD 3 9PD C04 C4 C 0 1 N N N -14.506 -30.448 -23.451 -5.823 -0.447 -0.101 C04 9PD 4 9PD C05 C5 C 0 1 N N N -13.975 -31.882 -23.389 -4.540 0.366 0.083 C05 9PD 5 9PD C06 C6 C 0 1 N N N -13.988 -32.491 -21.974 -3.326 -0.544 -0.115 C06 9PD 6 9PD C07 C7 C 0 1 N N N -12.705 -33.318 -21.746 -2.044 0.269 0.069 C07 9PD 7 9PD C08 C8 C 0 1 N N N -12.922 -34.810 -21.463 -0.830 -0.642 -0.129 C08 9PD 8 9PD C09 C9 C 0 1 N N N -13.112 -35.689 -22.707 0.453 0.172 0.055 C09 9PD 9 9PD C10 C10 C 0 1 N N N -13.491 -37.080 -22.209 1.666 -0.739 -0.143 C10 9PD 10 9PD C11 C11 C 0 1 N N N -14.595 -37.738 -23.041 2.950 0.074 0.041 C11 9PD 11 9PD C12 C12 C 0 1 N N N -14.010 -38.622 -24.160 4.163 -0.836 -0.157 C12 9PD 12 9PD P13 P1 P 0 1 N N N -12.980 -40.080 -23.490 5.692 0.133 0.062 P13 9PD 13 9PD C14 C13 C 0 1 N N N -12.515 -41.232 -24.931 7.134 -0.979 -0.026 C14 9PD 14 9PD C15 C14 C 0 1 N N N -14.043 -40.935 -22.168 5.810 1.387 -1.256 C15 9PD 15 9PD O16 O1 O 0 1 N N N -11.724 -39.589 -22.769 5.666 0.804 1.381 O16 9PD 16 9PD H1 H1 H 0 1 N N N -14.322 -26.224 -23.111 -10.447 -0.019 -0.020 H1 9PD 17 9PD H2 H2 H 0 1 N N N -13.996 -27.698 -22.138 -9.511 0.982 1.116 H2 9PD 18 9PD H3 H3 H 0 1 N N N -12.733 -27.050 -23.239 -9.506 1.367 -0.622 H3 9PD 19 9PD H4 H4 H 0 1 N N N -14.184 -27.545 -25.194 -8.347 -1.156 0.646 H4 9PD 20 9PD H5 H5 H 0 1 N N N -15.447 -28.192 -24.093 -8.342 -0.771 -1.092 H5 9PD 21 9PD H6 H6 H 0 1 N N N -13.880 -29.840 -25.433 -7.009 1.270 -0.636 H6 9PD 22 9PD H7 H7 H 0 1 N N N -12.697 -29.472 -24.133 -7.015 0.885 1.102 H7 9PD 23 9PD H8 H8 H 0 1 N N N -14.452 -30.026 -22.437 -5.850 -1.253 0.632 H8 9PD 24 9PD H9 H9 H 0 1 N N N -15.556 -30.492 -23.775 -5.845 -0.869 -1.106 H9 9PD 25 9PD H10 H10 H 0 1 N N N -14.598 -32.511 -24.043 -4.513 1.172 -0.650 H10 9PD 26 9PD H11 H11 H 0 1 N N N -12.939 -31.884 -23.758 -4.518 0.788 1.088 H11 9PD 27 9PD H12 H12 H 0 1 N N N -14.038 -31.683 -21.230 -3.354 -1.350 0.618 H12 9PD 28 9PD H13 H13 H 0 1 N N N -14.867 -33.144 -21.866 -3.349 -0.966 -1.120 H13 9PD 29 9PD H14 H14 H 0 1 N N N -12.081 -33.231 -22.648 -2.016 1.075 -0.664 H14 9PD 30 9PD H15 H15 H 0 1 N N N -12.171 -32.885 -20.888 -2.022 0.691 1.074 H15 9PD 31 9PD H16 H16 H 0 1 N N N -13.819 -34.910 -20.835 -0.857 -1.448 0.604 H16 9PD 32 9PD H17 H17 H 0 1 N N N -12.046 -35.183 -20.913 -0.852 -1.063 -1.134 H17 9PD 33 9PD H18 H18 H 0 1 N N N -12.177 -35.735 -23.285 0.480 0.978 -0.678 H18 9PD 34 9PD H19 H19 H 0 1 N N N -13.914 -35.282 -23.340 0.475 0.593 1.060 H19 9PD 35 9PD H20 H20 H 0 1 N N N -13.840 -36.996 -21.169 1.639 -1.545 0.590 H20 9PD 36 9PD H21 H21 H 0 1 N N N -12.597 -37.720 -22.245 1.645 -1.161 -1.148 H21 9PD 37 9PD H22 H22 H 0 1 N N N -15.217 -36.952 -23.495 2.977 0.881 -0.692 H22 9PD 38 9PD H23 H23 H 0 1 N N N -15.216 -38.362 -22.381 2.971 0.496 1.046 H23 9PD 39 9PD H24 H24 H 0 1 N N N -13.365 -38.000 -24.798 4.136 -1.642 0.576 H24 9PD 40 9PD H25 H25 H 0 1 N N N -14.840 -39.024 -24.760 4.141 -1.258 -1.162 H25 9PD 41 9PD H26 H26 H 0 1 N N N -11.920 -42.075 -24.550 7.153 -1.473 -0.998 H26 9PD 42 9PD H27 H27 H 0 1 N N N -13.431 -41.614 -25.405 8.048 -0.400 0.105 H27 9PD 43 9PD H28 H28 H 0 1 N N N -11.925 -40.673 -25.672 7.063 -1.729 0.762 H28 9PD 44 9PD H29 H29 H 0 1 N N N -14.277 -40.220 -21.366 4.948 2.052 -1.203 H29 9PD 45 9PD H30 H30 H 0 1 N N N -14.978 -41.293 -22.624 6.724 1.967 -1.125 H30 9PD 46 9PD H31 H31 H 0 1 N N N -13.490 -41.788 -21.748 5.829 0.893 -2.227 H31 9PD 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PD C14 P13 SING N N 1 9PD C03 C02 SING N N 2 9PD C03 C04 SING N N 3 9PD C02 C01 SING N N 4 9PD C12 P13 SING N N 5 9PD C12 C11 SING N N 6 9PD P13 O16 DOUB N N 7 9PD P13 C15 SING N N 8 9PD C04 C05 SING N N 9 9PD C05 C06 SING N N 10 9PD C11 C10 SING N N 11 9PD C09 C10 SING N N 12 9PD C09 C08 SING N N 13 9PD C06 C07 SING N N 14 9PD C07 C08 SING N N 15 9PD C01 H1 SING N N 16 9PD C01 H2 SING N N 17 9PD C01 H3 SING N N 18 9PD C02 H4 SING N N 19 9PD C02 H5 SING N N 20 9PD C03 H6 SING N N 21 9PD C03 H7 SING N N 22 9PD C04 H8 SING N N 23 9PD C04 H9 SING N N 24 9PD C05 H10 SING N N 25 9PD C05 H11 SING N N 26 9PD C06 H12 SING N N 27 9PD C06 H13 SING N N 28 9PD C07 H14 SING N N 29 9PD C07 H15 SING N N 30 9PD C08 H16 SING N N 31 9PD C08 H17 SING N N 32 9PD C09 H18 SING N N 33 9PD C09 H19 SING N N 34 9PD C10 H20 SING N N 35 9PD C10 H21 SING N N 36 9PD C11 H22 SING N N 37 9PD C11 H23 SING N N 38 9PD C12 H24 SING N N 39 9PD C12 H25 SING N N 40 9PD C14 H26 SING N N 41 9PD C14 H27 SING N N 42 9PD C14 H28 SING N N 43 9PD C15 H29 SING N N 44 9PD C15 H30 SING N N 45 9PD C15 H31 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PD SMILES ACDLabs 12.01 "CCCCCCCCCCCCP(=O)(C)C" 9PD InChI InChI 1.03 "InChI=1S/C14H31OP/c1-4-5-6-7-8-9-10-11-12-13-14-16(2,3)15/h4-14H2,1-3H3" 9PD InChIKey InChI 1.03 SIDULKZCBGMXJL-UHFFFAOYSA-N 9PD SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCC[P](C)(C)=O" 9PD SMILES CACTVS 3.385 "CCCCCCCCCCCC[P](C)(C)=O" 9PD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCP(=O)(C)C" 9PD SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCP(=O)(C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9PD "SYSTEMATIC NAME" ACDLabs 12.01 "dodecyl(dimethyl)oxo-lambda~5~-phosphane" 9PD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-dimethylphosphoryldodecane # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PD "Create component" 2020-04-16 RCSB 9PD "Modify name" 2020-04-22 RCSB 9PD "Initial release" 2020-10-28 RCSB 9PD "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9PD _pdbx_chem_comp_synonyms.name APO-12 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##