data_9PJ # _chem_comp.id 9PJ _chem_comp.name "5-(difluoromethyl)-3-{[1-{[(3S)-5-fluoro-2-methyl-6-oxo-3,6-dihydropyridin-3-yl]methyl}-6-oxo-4-(1,1,2,2-tetrafluoroethyl)-1,6-dihydropyrimidin-5-yl]oxy}-2-methylbenzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H15 F7 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-25 _chem_comp.pdbx_modified_date 2022-11-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9PJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SLS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9PJ O2 O1 O 0 1 N N N 5.944 6.705 15.189 -6.074 -1.962 1.914 O2 9PJ 1 9PJ C21 C1 C 0 1 N N N 5.874 7.930 15.225 -5.424 -1.224 1.197 C21 9PJ 2 9PJ N3 N1 N 0 1 N N N 6.161 8.696 14.110 -5.872 -0.970 -0.039 N3 9PJ 3 9PJ C1 C2 C 0 1 N N N 6.257 10.073 14.085 -5.246 -0.198 -0.866 C1 9PJ 4 9PJ C C3 C 0 1 N N N 6.419 10.628 12.707 -5.804 0.048 -2.244 C 9PJ 5 9PJ C20 C4 C 0 1 N N N 5.605 8.724 16.393 -4.182 -0.642 1.725 C20 9PJ 6 9PJ F6 F1 F 0 1 N N N 5.094 8.074 17.459 -3.782 -0.931 2.983 F6 9PJ 7 9PJ C19 C5 C 0 1 N N N 5.738 10.061 16.427 -3.448 0.173 0.960 C19 9PJ 8 9PJ C2 C6 C 0 1 N N S 6.111 10.765 15.240 -3.952 0.456 -0.440 C2 9PJ 9 9PJ C3 C7 C 0 1 N N N 6.449 12.229 15.342 -2.865 0.030 -1.429 C3 9PJ 10 9PJ N N2 N 0 1 N N N 7.886 12.475 15.408 -1.619 0.737 -1.121 N 9PJ 11 9PJ C16 C8 C 0 1 N N N 8.538 12.152 16.595 -0.731 0.198 -0.259 C16 9PJ 12 9PJ O1 O2 O 0 1 N N N 7.914 11.731 17.554 -0.951 -0.879 0.271 O1 9PJ 13 9PJ C6 C9 C 0 1 N N N 9.945 12.433 16.580 0.462 0.909 0.015 C6 9PJ 14 9PJ C5 C10 C 0 1 N N N 10.513 13.010 15.473 0.661 2.109 -0.603 C5 9PJ 15 9PJ C17 C11 C 0 1 N N N 11.978 13.407 15.454 1.919 2.896 -0.337 C17 9PJ 16 9PJ F3 F2 F 0 1 N N N 12.168 14.493 14.656 2.536 3.214 -1.552 F3 9PJ 17 9PJ C18 C12 C 0 1 N N N 12.950 12.278 14.944 1.566 4.185 0.408 C18 9PJ 18 9PJ F5 F3 F 0 1 N N N 12.669 11.140 15.617 0.959 3.867 1.628 F5 9PJ 19 9PJ F4 F4 F 0 1 N N N 12.680 12.042 13.636 2.733 4.920 0.646 F4 9PJ 20 9PJ F2 F5 F 0 1 N N N 12.399 13.780 16.696 2.792 2.130 0.443 F2 9PJ 21 9PJ N1 N3 N 0 1 N N N 9.809 13.309 14.310 -0.260 2.585 -1.445 N1 9PJ 22 9PJ C4 C13 C 0 1 N N N 8.545 13.015 14.347 -1.357 1.926 -1.702 C4 9PJ 23 9PJ O O3 O 0 1 N N N 10.749 12.097 17.654 1.388 0.408 0.876 O 9PJ 24 9PJ C7 C14 C 0 1 Y N N 10.439 12.566 18.943 2.038 -0.732 0.522 C7 9PJ 25 9PJ C13 C15 C 0 1 Y N N 10.183 11.638 19.958 2.894 -1.348 1.419 C13 9PJ 26 9PJ C14 C16 C 0 1 N N N 10.092 10.159 19.675 3.108 -0.756 2.789 C14 9PJ 27 9PJ C11 C17 C 0 1 Y N N 9.972 12.126 21.256 3.559 -2.518 1.051 C11 9PJ 28 9PJ C12 C18 C 0 1 N N N 9.706 11.221 22.342 4.446 -3.161 1.974 C12 9PJ 29 9PJ N2 N4 N 0 1 N N N 9.488 10.543 23.234 5.150 -3.671 2.705 N2 9PJ 30 9PJ C10 C19 C 0 1 Y N N 10.005 13.494 21.494 3.356 -3.060 -0.220 C10 9PJ 31 9PJ C9 C20 C 0 1 Y N N 10.239 14.403 20.468 2.500 -2.438 -1.105 C9 9PJ 32 9PJ C8 C21 C 0 1 Y N N 10.458 13.927 19.177 1.838 -1.281 -0.737 C8 9PJ 33 9PJ C15 C22 C 0 1 N N N 10.273 15.874 20.771 2.282 -3.025 -2.476 C15 9PJ 34 9PJ F F6 F 0 1 N N N 9.348 16.542 20.016 0.914 -3.236 -2.681 F 9PJ 35 9PJ F1 F7 F 0 1 N N N 11.416 16.404 20.340 2.767 -2.139 -3.445 F1 9PJ 36 9PJ H1 H1 H 0 1 N N N 6.429 9.804 11.978 -6.735 -0.504 -2.363 H1 9PJ 37 9PJ H2 H2 H 0 1 N N N 5.581 11.305 12.484 -5.994 1.114 -2.374 H2 9PJ 38 9PJ H3 H3 H 0 1 N N N 7.366 11.184 12.645 -5.085 -0.286 -2.992 H3 9PJ 39 9PJ H4 H4 H 0 1 N N N 5.564 10.601 17.346 -2.532 0.612 1.326 H4 9PJ 40 9PJ H5 H5 H 0 1 N N N 5.060 10.994 15.008 -4.077 1.535 -0.533 H5 9PJ 41 9PJ H6 H6 H 0 1 N N N 6.044 12.745 14.459 -2.701 -1.045 -1.347 H6 9PJ 42 9PJ H7 H7 H 0 1 N N N 5.981 12.635 16.251 -3.180 0.273 -2.443 H7 9PJ 43 9PJ H8 H8 H 0 1 N N N 13.989 12.606 15.099 0.880 4.778 -0.196 H8 9PJ 44 9PJ H9 H9 H 0 1 N N N 7.966 13.217 13.458 -2.076 2.347 -2.389 H9 9PJ 45 9PJ H10 H10 H 0 1 N N N 11.085 9.701 19.793 2.377 -1.172 3.482 H10 9PJ 46 9PJ H11 H11 H 0 1 N N N 9.388 9.694 20.380 4.113 -0.994 3.135 H11 9PJ 47 9PJ H12 H12 H 0 1 N N N 9.737 10.004 18.646 2.987 0.326 2.740 H12 9PJ 48 9PJ H13 H13 H 0 1 N N N 9.845 13.860 22.498 3.868 -3.966 -0.509 H13 9PJ 49 9PJ H14 H14 H 0 1 N N N 10.641 14.616 18.366 1.166 -0.801 -1.434 H14 9PJ 50 9PJ H15 H15 H 0 1 N N N 10.115 16.036 21.848 2.812 -3.974 -2.554 H15 9PJ 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9PJ C C1 SING N N 1 9PJ F4 C18 SING N N 2 9PJ C1 N3 DOUB N N 3 9PJ C1 C2 SING N N 4 9PJ N3 C21 SING N N 5 9PJ N1 C4 DOUB N N 6 9PJ N1 C5 SING N N 7 9PJ C4 N SING N N 8 9PJ F3 C17 SING N N 9 9PJ C18 C17 SING N N 10 9PJ C18 F5 SING N N 11 9PJ O2 C21 DOUB N N 12 9PJ C21 C20 SING N N 13 9PJ C2 C3 SING N N 14 9PJ C2 C19 SING N N 15 9PJ C3 N SING N N 16 9PJ N C16 SING N N 17 9PJ C17 C5 SING N N 18 9PJ C17 F2 SING N N 19 9PJ C5 C6 DOUB N N 20 9PJ C20 C19 DOUB N N 21 9PJ C20 F6 SING N N 22 9PJ C6 C16 SING N N 23 9PJ C6 O SING N N 24 9PJ C16 O1 DOUB N N 25 9PJ O C7 SING N N 26 9PJ C7 C8 DOUB Y N 27 9PJ C7 C13 SING Y N 28 9PJ C8 C9 SING Y N 29 9PJ C14 C13 SING N N 30 9PJ C13 C11 DOUB Y N 31 9PJ F C15 SING N N 32 9PJ F1 C15 SING N N 33 9PJ C9 C15 SING N N 34 9PJ C9 C10 DOUB Y N 35 9PJ C11 C10 SING Y N 36 9PJ C11 C12 SING N N 37 9PJ C12 N2 TRIP N N 38 9PJ C H1 SING N N 39 9PJ C H2 SING N N 40 9PJ C H3 SING N N 41 9PJ C19 H4 SING N N 42 9PJ C2 H5 SING N N 43 9PJ C3 H6 SING N N 44 9PJ C3 H7 SING N N 45 9PJ C18 H8 SING N N 46 9PJ C4 H9 SING N N 47 9PJ C14 H10 SING N N 48 9PJ C14 H11 SING N N 49 9PJ C14 H12 SING N N 50 9PJ C10 H13 SING N N 51 9PJ C8 H14 SING N N 52 9PJ C15 H15 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9PJ SMILES ACDLabs 12.01 "FC(F)C(F)(F)C=1N=CN(CC2C=C(F)C(=O)N=C2C)C(=O)C=1Oc1cc(cc(C#N)c1C)C(F)F" 9PJ InChI InChI 1.03 "InChI=1S/C22H15F7N4O3/c1-9-12(6-30)3-11(18(24)25)5-15(9)36-16-17(22(28,29)21(26)27)31-8-33(20(16)35)7-13-4-14(23)19(34)32-10(13)2/h3-5,8,13,18,21H,7H2,1-2H3/t13-/m0/s1" 9PJ InChIKey InChI 1.03 YVSVCEXZEPOJHL-ZDUSSCGKSA-N 9PJ SMILES_CANONICAL CACTVS 3.385 "CC1=NC(=O)C(=C[C@H]1CN2C=NC(=C(Oc3cc(cc(C#N)c3C)C(F)F)C2=O)C(F)(F)C(F)F)F" 9PJ SMILES CACTVS 3.385 "CC1=NC(=O)C(=C[CH]1CN2C=NC(=C(Oc3cc(cc(C#N)c3C)C(F)F)C2=O)C(F)(F)C(F)F)F" 9PJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(cc1OC2=C(N=CN(C2=O)CC3C=C(C(=O)N=C3C)F)C(C(F)F)(F)F)C(F)F)C#N" 9PJ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(cc1OC2=C(N=CN(C2=O)CC3C=C(C(=O)N=C3C)F)C(C(F)F)(F)F)C(F)F)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9PJ "SYSTEMATIC NAME" ACDLabs 12.01 "5-(difluoromethyl)-3-{[1-{[(3S)-5-fluoro-2-methyl-6-oxo-3,6-dihydropyridin-3-yl]methyl}-6-oxo-4-(1,1,2,2-tetrafluoroethyl)-1,6-dihydropyrimidin-5-yl]oxy}-2-methylbenzonitrile" 9PJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[bis(fluoranyl)methyl]-3-[1-[(5-fluoranyl-2-methyl-6-oxidanylidene-3~{H}-pyridin-3-yl)methyl]-6-oxidanylidene-4-[1,1,2,2-tetrakis(fluoranyl)ethyl]pyrimidin-5-yl]oxy-2-methyl-benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9PJ "Create component" 2021-10-25 RCSB 9PJ "Initial release" 2022-11-23 RCSB #