data_9Q0 # _chem_comp.id 9Q0 _chem_comp.name "1-{5-[(1S)-2-amino-1-hydroxy-2-oxo-1-phenylethyl]-7,8-dimethyl-2,4-dioxo-1,2,3,4-tetrahydrobenzo[g]pteridine-5,10-diium-10-yl}-1-deoxy-5-O-phosphono-D-ribitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N5 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2018-06-20 _chem_comp.pdbx_modified_date 2019-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 607.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9Q0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9Q0 C4 C1 C 0 1 N N N 31.771 -8.878 23.666 3.256 2.028 0.805 C4 9Q0 1 9Q0 C6 C2 C 0 1 Y N N 29.129 -8.521 27.584 2.905 -2.715 -0.037 C6 9Q0 2 9Q0 C11 C3 C 0 1 Y N N 29.375 -8.857 23.502 1.148 0.784 1.232 C11 9Q0 3 9Q0 C7 C4 C 0 1 Y N N 27.902 -8.741 28.207 2.139 -3.839 -0.017 C7 9Q0 4 9Q0 C8 C5 C 0 1 Y N N 26.763 -8.969 27.425 0.815 -3.814 0.413 C8 9Q0 5 9Q0 C9 C6 C 0 1 Y N N 26.846 -8.971 26.041 0.222 -2.664 0.835 C9 9Q0 6 9Q0 N1 N1 N 0 1 N N N 29.462 -9.166 22.158 0.609 1.994 1.638 N1 9Q0 7 9Q0 N3 N2 N 0 1 N N N 31.865 -9.176 22.309 2.626 3.145 1.227 N3 9Q0 8 9Q0 C2 C7 C 0 1 N N N 30.701 -9.320 21.555 1.346 3.116 1.627 C2 9Q0 9 9Q0 C4A C8 C 0 1 Y N N 30.521 -8.740 24.284 2.495 0.756 0.793 C4A 9Q0 10 9Q0 C5A C9 C 0 1 Y N N 29.225 -8.571 26.201 2.351 -1.492 0.387 C5A 9Q0 11 9Q0 C9A C10 C 0 1 Y N N 28.069 -8.755 25.418 0.957 -1.467 0.839 C9A 9Q0 12 9Q0 CAA C11 C 0 1 N N N 27.821 -8.734 29.604 2.740 -5.144 -0.472 CAA 9Q0 13 9Q0 CAH C12 C 0 1 N N N 25.522 -9.193 28.018 0.018 -5.093 0.410 CAH 9Q0 14 9Q0 CAS C13 C 0 1 N N N 26.934 -8.945 23.223 -0.973 -0.269 1.703 CAS 9Q0 15 9Q0 CAT C14 C 0 1 N N S 26.489 -10.433 23.054 -1.892 0.018 0.514 CAT 9Q0 16 9Q0 CAU C15 C 0 1 N N S 25.185 -10.516 22.249 -3.351 -0.059 0.967 CAU 9Q0 17 9Q0 CAV C16 C 0 1 N N R 24.003 -10.016 23.061 -4.270 0.229 -0.222 CAV 9Q0 18 9Q0 CAW C17 C 0 1 N N N 22.788 -10.851 22.603 -5.729 0.152 0.231 CAW 9Q0 19 9Q0 CBF C18 C 0 1 Y N N 31.753 -6.234 26.666 4.707 0.843 -0.924 CBF 9Q0 20 9Q0 CBG C19 C 0 1 N N S 30.846 -6.719 25.689 4.454 -0.367 -0.063 CBG 9Q0 21 9Q0 CBH C20 C 0 1 N N N 29.740 -5.621 25.869 4.721 -1.617 -0.861 CBH 9Q0 22 9Q0 CBJ C21 C 0 1 Y N N 32.959 -5.701 26.216 3.675 1.398 -1.657 CBJ 9Q0 23 9Q0 CBK C22 C 0 1 Y N N 33.869 -5.135 27.116 3.906 2.512 -2.443 CBK 9Q0 24 9Q0 CBL C23 C 0 1 Y N N 33.578 -5.037 28.473 5.169 3.071 -2.496 CBL 9Q0 25 9Q0 CBM C24 C 0 1 Y N N 32.350 -5.510 28.919 6.201 2.516 -1.762 CBM 9Q0 26 9Q0 CBN C25 C 0 1 Y N N 31.439 -6.080 28.024 5.971 1.402 -0.977 CBN 9Q0 27 9Q0 N10 N3 N 1 1 Y N N 28.153 -8.767 24.058 0.418 -0.313 1.245 N10 9Q0 28 9Q0 N5 N4 N 1 1 Y N N 30.347 -8.287 25.544 3.059 -0.363 0.386 N5 9Q0 29 9Q0 NBP N5 N 0 1 N N N 29.934 -4.556 25.075 3.994 -1.880 -1.964 NBP 9Q0 30 9Q0 O2 O1 O 0 1 N N N 30.765 -9.595 20.354 0.830 4.153 1.997 O2 9Q0 31 9Q0 O4 O2 O 0 1 N N N 32.818 -8.751 24.300 4.414 2.065 0.440 O4 9Q0 32 9Q0 OAX O3 O 0 1 N N N 21.670 -10.477 23.370 -6.588 0.305 -0.900 OAX 9Q0 33 9Q0 OAZ O4 O 0 1 N N N 19.693 -10.797 24.779 -8.835 0.608 -2.232 OAZ 9Q0 34 9Q0 OBA O5 O 0 1 N N N 21.982 -11.199 25.746 -8.674 -1.186 -0.317 OBA 9Q0 35 9Q0 OBB O6 O 0 1 N N N 21.044 -12.831 24.054 -8.642 1.286 0.191 OBB 9Q0 36 9Q0 OBC O7 O 0 1 N N N 24.272 -10.233 24.451 -3.997 1.536 -0.729 OBC 9Q0 37 9Q0 OBD O8 O 0 1 N N N 25.243 -9.735 21.035 -3.624 -1.367 1.474 OBD 9Q0 38 9Q0 OBE O9 O 0 1 N N N 27.492 -11.236 22.383 -1.619 1.326 0.007 OBE 9Q0 39 9Q0 OBI O10 O 0 1 N N N 28.874 -5.617 26.754 5.592 -2.385 -0.511 OBI 9Q0 40 9Q0 OBO O11 O 0 1 N N N 31.437 -6.170 24.482 5.320 -0.333 1.073 OBO 9Q0 41 9Q0 PAY P1 P 0 1 N N N 21.012 -11.414 24.494 -8.194 0.275 -0.793 PAY 9Q0 42 9Q0 H1 H1 H 0 1 N N N 30.006 -8.311 28.178 3.929 -2.760 -0.375 H1 9Q0 43 9Q0 H2 H2 H 0 1 N N N 25.960 -9.140 25.447 -0.807 -2.671 1.163 H2 9Q0 44 9Q0 H3 H3 H 0 1 N N N 28.628 -9.279 21.618 -0.314 2.031 1.934 H3 9Q0 45 9Q0 H4 H4 H 0 1 N N N 32.761 -9.286 21.878 3.110 3.986 1.242 H4 9Q0 46 9Q0 H5 H5 H 0 1 N N N 27.992 -9.751 29.987 3.262 -5.614 0.361 H5 9Q0 47 9Q0 H6 H6 H 0 1 N N N 28.585 -8.056 30.012 1.948 -5.806 -0.824 H6 9Q0 48 9Q0 H7 H7 H 0 1 N N N 26.823 -8.389 29.912 3.444 -4.957 -1.283 H7 9Q0 49 9Q0 H8 H8 H 0 1 N N N 25.386 -10.271 28.189 0.069 -5.555 1.396 H8 9Q0 50 9Q0 H9 H9 H 0 1 N N N 25.474 -8.660 28.979 -1.021 -4.873 0.166 H9 9Q0 51 9Q0 H10 H10 H 0 1 N N N 24.726 -8.824 27.354 0.430 -5.777 -0.332 H10 9Q0 52 9Q0 H11 H11 H 0 1 N N N 27.135 -8.529 22.225 -1.085 0.518 2.448 H11 9Q0 53 9Q0 H12 H12 H 0 1 N N N 26.109 -8.389 23.693 -1.240 -1.229 2.145 H12 9Q0 54 9Q0 H13 H13 H 0 1 N N N 26.302 -10.846 24.056 -1.715 -0.719 -0.269 H13 9Q0 55 9Q0 H14 H14 H 0 1 N N N 25.007 -11.571 21.994 -3.528 0.679 1.750 H14 9Q0 56 9Q0 H15 H15 H 0 1 N N N 23.823 -8.952 22.850 -4.093 -0.509 -1.005 H15 9Q0 57 9Q0 H16 H16 H 0 1 N N N 22.587 -10.660 21.538 -5.914 -0.815 0.699 H16 9Q0 58 9Q0 H17 H17 H 0 1 N N N 22.997 -11.921 22.750 -5.930 0.947 0.949 H17 9Q0 59 9Q0 H18 H18 H 0 1 N N N 33.194 -5.725 25.162 2.688 0.962 -1.616 H18 9Q0 60 9Q0 H19 H19 H 0 1 N N N 34.816 -4.767 26.750 3.100 2.945 -3.016 H19 9Q0 61 9Q0 H20 H20 H 0 1 N N N 34.288 -4.604 29.162 5.350 3.940 -3.110 H20 9Q0 62 9Q0 H21 H21 H 0 1 N N N 32.097 -5.437 29.966 7.188 2.953 -1.803 H21 9Q0 63 9Q0 H22 H22 H 0 1 N N N 30.476 -6.408 28.386 6.776 0.971 -0.401 H22 9Q0 64 9Q0 H23 H23 H 0 1 N N N 29.373 -3.736 25.192 3.348 -1.232 -2.286 H23 9Q0 65 9Q0 H24 H24 H 0 1 N N N 30.640 -4.582 24.367 4.116 -2.718 -2.437 H24 9Q0 66 9Q0 H25 H25 H 0 1 N N N 19.006 -11.436 24.631 -9.802 0.607 -2.242 H25 9Q0 67 9Q0 H26 H26 H 0 1 N N N 22.397 -12.024 25.971 -8.415 -1.900 -0.916 H26 9Q0 68 9Q0 H27 H27 H 0 1 N N N 23.538 -9.923 24.968 -4.134 2.245 -0.085 H27 9Q0 69 9Q0 H28 H28 H 0 1 N N N 24.419 -9.813 20.568 -3.487 -2.075 0.830 H28 9Q0 70 9Q0 H29 H29 H 0 1 N N N 28.307 -11.196 22.869 -1.756 2.034 0.651 H29 9Q0 71 9Q0 H30 H30 H 0 1 N N N 32.022 -6.811 24.096 5.203 0.446 1.634 H30 9Q0 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9Q0 O2 C2 DOUB N N 1 9Q0 OBD CAU SING N N 2 9Q0 C2 N1 SING N N 3 9Q0 C2 N3 SING N N 4 9Q0 N1 C11 SING N N 5 9Q0 CAU CAT SING N N 6 9Q0 CAU CAV SING N N 7 9Q0 N3 C4 SING N N 8 9Q0 OBE CAT SING N N 9 9Q0 CAW CAV SING N N 10 9Q0 CAW OAX SING N N 11 9Q0 CAT CAS SING N N 12 9Q0 CAV OBC SING N N 13 9Q0 CAS N10 SING N N 14 9Q0 OAX PAY SING N N 15 9Q0 C11 N10 DOUB Y N 16 9Q0 C11 C4A SING Y N 17 9Q0 C4 C4A SING N N 18 9Q0 C4 O4 DOUB N N 19 9Q0 OBB PAY DOUB N N 20 9Q0 N10 C9A SING Y N 21 9Q0 C4A N5 DOUB Y N 22 9Q0 OBO CBG SING N N 23 9Q0 PAY OAZ SING N N 24 9Q0 PAY OBA SING N N 25 9Q0 NBP CBH SING N N 26 9Q0 C9A C9 DOUB Y N 27 9Q0 C9A C5A SING Y N 28 9Q0 N5 CBG SING N N 29 9Q0 N5 C5A SING Y N 30 9Q0 CBG CBH SING N N 31 9Q0 CBG CBF SING N N 32 9Q0 CBH OBI DOUB N N 33 9Q0 C9 C8 SING Y N 34 9Q0 C5A C6 DOUB Y N 35 9Q0 CBJ CBF DOUB Y N 36 9Q0 CBJ CBK SING Y N 37 9Q0 CBF CBN SING Y N 38 9Q0 CBK CBL DOUB Y N 39 9Q0 C8 CAH SING N N 40 9Q0 C8 C7 DOUB Y N 41 9Q0 C6 C7 SING Y N 42 9Q0 CBN CBM DOUB Y N 43 9Q0 C7 CAA SING N N 44 9Q0 CBL CBM SING Y N 45 9Q0 C6 H1 SING N N 46 9Q0 C9 H2 SING N N 47 9Q0 N1 H3 SING N N 48 9Q0 N3 H4 SING N N 49 9Q0 CAA H5 SING N N 50 9Q0 CAA H6 SING N N 51 9Q0 CAA H7 SING N N 52 9Q0 CAH H8 SING N N 53 9Q0 CAH H9 SING N N 54 9Q0 CAH H10 SING N N 55 9Q0 CAS H11 SING N N 56 9Q0 CAS H12 SING N N 57 9Q0 CAT H13 SING N N 58 9Q0 CAU H14 SING N N 59 9Q0 CAV H15 SING N N 60 9Q0 CAW H16 SING N N 61 9Q0 CAW H17 SING N N 62 9Q0 CBJ H18 SING N N 63 9Q0 CBK H19 SING N N 64 9Q0 CBL H20 SING N N 65 9Q0 CBM H21 SING N N 66 9Q0 CBN H22 SING N N 67 9Q0 NBP H23 SING N N 68 9Q0 NBP H24 SING N N 69 9Q0 OAZ H25 SING N N 70 9Q0 OBA H26 SING N N 71 9Q0 OBC H27 SING N N 72 9Q0 OBD H28 SING N N 73 9Q0 OBE H29 SING N N 74 9Q0 OBO H30 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9Q0 SMILES ACDLabs 12.01 "C4(c2c([n+](c1cc(c(cc1[n+]2C(c3ccccc3)(C(=O)N)O)C)C)CC(C(C(O)COP(O)(O)=O)O)O)NC(N4)=O)=O" 9Q0 InChI InChI 1.03 "InChI=1S/C25H28N5O11P/c1-12-8-15-16(9-13(12)2)30(25(37,23(26)35)14-6-4-3-5-7-14)19-21(27-24(36)28-22(19)34)29(15)10-17(31)20(33)18(32)11-41-42(38,39)40/h3-9,17-18,20,31-33,37H,10-11H2,1-2H3,(H4-,26,28,34,35,36,38,39,40)/p+2/t17-,18+,20-,25-/m0/s1" 9Q0 InChIKey InChI 1.03 RQJITHUTOAFSKP-NOEFBULQSA-P 9Q0 SMILES_CANONICAL CACTVS 3.385 "Cc1cc2c(cc1C)[n+](c3C(=O)NC(=O)Nc3[n+]2C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)[C@@](O)(C(N)=O)c4ccccc4" 9Q0 SMILES CACTVS 3.385 "Cc1cc2c(cc1C)[n+](c3C(=O)NC(=O)Nc3[n+]2C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)[C](O)(C(N)=O)c4ccccc4" 9Q0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)[n+](c3c([n+]2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)NC(=O)NC3=O)[C@](c4ccccc4)(C(=O)N)O" 9Q0 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)[n+](c3c([n+]2CC(C(C(COP(=O)(O)O)O)O)O)NC(=O)NC3=O)C(c4ccccc4)(C(=O)N)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9Q0 "SYSTEMATIC NAME" ACDLabs 12.01 "1-{5-[(1S)-2-amino-1-hydroxy-2-oxo-1-phenylethyl]-7,8-dimethyl-2,4-dioxo-1,2,3,4-tetrahydrobenzo[g]pteridine-5,10-diium-10-yl}-1-deoxy-5-O-phosphono-D-ribitol" 9Q0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{S})-5-[5-[(1~{S})-2-azanyl-1-oxidanyl-2-oxidanylidene-1-phenyl-ethyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridine-5,10-diium-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9Q0 "Create component" 2018-06-20 PDBJ 9Q0 "Initial release" 2019-06-19 RCSB ##