data_9VR # _chem_comp.id 9VR _chem_comp.name "(2S)-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H19 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-16 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9VR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ABM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9VR C10 C1 C 0 1 Y N N 229.260 47.047 204.593 3.018 0.796 1.081 C10 9VR 1 9VR CE C2 C 0 1 N N N 225.186 45.710 205.688 -3.656 1.069 -0.154 CE 9VR 2 9VR CB C3 C 0 1 N N N 223.349 46.502 209.010 -7.110 -0.625 0.007 CB 9VR 3 9VR CA C4 C 0 1 N N S 223.537 48.020 209.246 -8.526 -0.047 -0.050 CA 9VR 4 9VR C26 C5 C 0 1 Y N N 229.665 46.219 202.366 3.020 0.567 -1.303 C26 9VR 5 9VR N1 N1 N 0 1 N N N 228.746 50.311 201.089 6.195 -2.435 -0.541 N1 9VR 6 9VR N2 N2 N 0 1 N N N 230.026 50.221 200.992 6.132 -2.423 0.697 N2 9VR 7 9VR C3 C6 C 0 1 N N N 229.481 50.006 202.324 6.119 -1.103 0.063 C3 9VR 8 9VR C4 C7 C 0 1 N N N 229.781 51.051 203.439 7.388 -0.250 0.120 C4 9VR 9 9VR F5 F1 F 0 1 N N N 229.229 50.861 204.647 7.293 0.657 1.181 F5 9VR 10 9VR F6 F2 F 0 1 N N N 229.359 52.240 203.032 8.498 -1.080 0.313 F6 9VR 11 9VR F7 F3 F 0 1 N N N 231.095 51.142 203.629 7.533 0.451 -1.082 F7 9VR 12 9VR C8 C8 C 0 1 Y N N 229.478 48.597 202.791 4.814 -0.351 -0.010 C8 9VR 13 9VR C9 C9 C 0 1 Y N N 229.257 48.328 204.130 4.214 0.106 1.148 C9 9VR 14 9VR C11 C10 C 0 1 Y N N 229.447 45.991 203.736 2.419 1.023 -0.144 C11 9VR 15 9VR C12 C11 C 0 1 N N N 229.424 44.608 204.294 1.112 1.770 -0.217 C12 9VR 16 9VR O13 O1 O 0 1 N N N 228.936 44.827 205.653 0.011 0.827 -0.127 O13 9VR 17 9VR C14 C12 C 0 1 N N N 227.509 44.715 205.804 -1.234 1.336 -0.177 C14 9VR 18 9VR O15 O2 O 0 1 N N N 227.011 43.659 206.164 -1.397 2.534 -0.293 O15 9VR 19 9VR NZ N3 N 0 1 N N N 226.632 45.852 205.512 -2.301 0.515 -0.099 NZ 9VR 20 9VR CD C13 C 0 1 N N N 224.940 45.950 207.164 -4.676 -0.067 -0.045 CD 9VR 21 9VR CG C14 C 0 1 N N N 223.463 46.023 207.553 -6.091 0.511 -0.102 CG 9VR 22 9VR N N4 N 0 1 N N N 224.032 48.246 210.631 -8.758 0.797 1.130 N 9VR 23 9VR C C15 C 0 1 N N N 222.314 48.952 209.013 -9.528 -1.173 -0.067 C 9VR 24 9VR O O3 O 0 1 N N N 221.258 48.602 208.216 -10.100 -1.487 0.950 O 9VR 25 9VR OXT O4 O 0 1 N Y N 222.301 50.186 209.605 -9.785 -1.826 -1.211 OXT 9VR 26 9VR C27 C16 C 0 1 Y N N 229.682 47.547 201.884 4.219 -0.118 -1.236 C27 9VR 27 9VR H1 H1 H 0 1 N N N 229.114 46.860 205.647 2.549 1.153 1.986 H1 9VR 28 9VR HE2 H2 H 0 1 N N N 224.649 46.454 205.081 -3.798 1.765 0.673 HE2 9VR 29 9VR HE3 H3 H 0 1 N N N 224.860 44.699 205.402 -3.797 1.594 -1.098 HE3 9VR 30 9VR HB2 H4 H 0 1 N N N 222.349 46.226 209.377 -6.970 -1.150 0.952 HB2 9VR 31 9VR HB3 H5 H 0 1 N N N 224.114 45.974 209.598 -6.969 -1.321 -0.820 HB3 9VR 32 9VR HA H6 H 0 1 N N N 224.325 48.354 208.555 -8.638 0.552 -0.953 HA 9VR 33 9VR H7 H7 H 0 1 N N N 229.817 45.390 201.691 2.552 0.744 -2.260 H7 9VR 34 9VR H10 H10 H 0 1 N N N 229.080 49.143 204.816 4.679 -0.076 2.106 H10 9VR 35 9VR H11 H11 H 0 1 N N N 228.741 43.961 203.725 1.052 2.479 0.609 H11 9VR 36 9VR H12 H12 H 0 1 N N N 230.430 44.164 204.299 1.053 2.308 -1.163 H12 9VR 37 9VR HZ H13 H 0 1 N N N 227.018 46.718 205.195 -2.171 -0.442 -0.007 HZ 9VR 38 9VR HD2 H14 H 0 1 N N N 225.405 45.128 207.729 -4.534 -0.763 -0.872 HD2 9VR 39 9VR HD3 H15 H 0 1 N N N 225.417 46.901 207.442 -4.535 -0.592 0.900 HD3 9VR 40 9VR HG2 H16 H 0 1 N N N 222.942 46.731 206.891 -6.232 1.036 -1.046 HG2 9VR 41 9VR HG3 H17 H 0 1 N N N 223.007 45.027 207.456 -6.233 1.207 0.725 HG3 9VR 42 9VR H H18 H 0 1 N N N 224.154 49.226 210.786 -9.662 1.242 1.084 H 9VR 43 9VR H2 H19 H 0 1 N Y N 223.367 47.886 211.285 -8.660 0.264 1.981 H2 9VR 44 9VR HXT H21 H 0 1 N Y N 221.508 50.648 209.359 -10.435 -2.540 -1.172 HXT 9VR 45 9VR H22 H22 H 0 1 N N N 229.849 47.750 200.836 4.688 -0.476 -2.141 H22 9VR 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9VR N2 N1 DOUB N N 1 9VR N2 C3 SING N N 2 9VR N1 C3 SING N N 3 9VR C27 C26 DOUB Y N 4 9VR C27 C8 SING Y N 5 9VR C3 C8 SING N N 6 9VR C3 C4 SING N N 7 9VR C26 C11 SING Y N 8 9VR C8 C9 DOUB Y N 9 9VR F6 C4 SING N N 10 9VR C4 F7 SING N N 11 9VR C4 F5 SING N N 12 9VR C11 C12 SING N N 13 9VR C11 C10 DOUB Y N 14 9VR C9 C10 SING Y N 15 9VR C12 O13 SING N N 16 9VR NZ CE SING N N 17 9VR NZ C14 SING N N 18 9VR O13 C14 SING N N 19 9VR CE CD SING N N 20 9VR C14 O15 DOUB N N 21 9VR CD CG SING N N 22 9VR CG CB SING N N 23 9VR O C DOUB N N 24 9VR CB CA SING N N 25 9VR C CA SING N N 26 9VR C OXT SING N N 27 9VR CA N SING N N 28 9VR C10 H1 SING N N 29 9VR CE HE2 SING N N 30 9VR CE HE3 SING N N 31 9VR CB HB2 SING N N 32 9VR CB HB3 SING N N 33 9VR CA HA SING N N 34 9VR C26 H7 SING N N 35 9VR C9 H10 SING N N 36 9VR C12 H11 SING N N 37 9VR C12 H12 SING N N 38 9VR NZ HZ SING N N 39 9VR CD HD2 SING N N 40 9VR CD HD3 SING N N 41 9VR CG HG2 SING N N 42 9VR CG HG3 SING N N 43 9VR N H SING N N 44 9VR N H2 SING N N 45 9VR OXT HXT SING N N 46 9VR C27 H22 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9VR InChI InChI 1.03 "InChI=1S/C16H19F3N4O4/c17-16(18,19)15(22-23-15)11-6-4-10(5-7-11)9-27-14(26)21-8-2-1-3-12(20)13(24)25/h4-7,12H,1-3,8-9,20H2,(H,21,26)(H,24,25)/t12-/m0/s1" 9VR InChIKey InChI 1.03 MCWCMRBMGUKPHR-LBPRGKRZSA-N 9VR SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)OCc1ccc(cc1)C2(N=N2)C(F)(F)F)C(O)=O" 9VR SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)OCc1ccc(cc1)C2(N=N2)C(F)(F)F)C(O)=O" 9VR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1COC(=O)NCCCC[C@@H](C(=O)O)N)C2(N=N2)C(F)(F)F" 9VR SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1COC(=O)NCCCCC(C(=O)O)N)C2(N=N2)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id 9VR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9VR "Create component" 2018-08-16 PDBJ 9VR "Initial release" 2019-04-17 RCSB ##