data_9YC # _chem_comp.id 9YC _chem_comp.name "(2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-19 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9YC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XET _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9YC OAU O1 O 0 1 N N N 32.109 -36.504 -37.780 -5.217 0.797 0.539 OAU 9YC 1 9YC PAT P1 P 0 1 N N N 31.995 -35.035 -38.260 -3.719 1.259 0.171 PAT 9YC 2 9YC OAV O2 O 0 1 N N N 32.933 -34.710 -39.469 -3.714 1.903 -1.161 OAV 9YC 3 9YC OAW O3 O 0 1 N N N 30.604 -34.646 -38.629 -3.194 2.306 1.275 OAW 9YC 4 9YC OAS O4 O 0 1 N N N 32.450 -34.137 -36.977 -2.751 -0.028 0.149 OAS 9YC 5 9YC CAR C1 C 0 1 N N N 32.901 -32.783 -37.282 -1.379 0.037 -0.247 CAR 9YC 6 9YC CAA C2 C 0 1 Y N N 33.564 -32.367 -36.120 -0.764 -1.336 -0.154 CAA 9YC 7 9YC CAB C3 C 0 1 Y N N 32.925 -31.486 -35.253 -1.523 -2.415 0.260 CAB 9YC 8 9YC NAC N1 N 0 1 Y N N 33.507 -31.064 -34.066 -0.995 -3.620 0.345 NAC 9YC 9 9YC CAD C4 C 0 1 Y N N 34.736 -31.469 -33.683 0.268 -3.848 0.042 CAD 9YC 10 9YC CAG C5 C 0 1 N N N 35.258 -30.980 -32.428 0.822 -5.245 0.156 CAG 9YC 11 9YC CAE C6 C 0 1 Y N N 35.408 -32.384 -34.534 1.092 -2.816 -0.381 CAE 9YC 12 9YC OAH O5 O 0 1 N N N 36.630 -32.879 -34.142 2.393 -3.055 -0.693 OAH 9YC 13 9YC CAF C7 C 0 1 Y N N 34.828 -32.851 -35.766 0.566 -1.532 -0.488 CAF 9YC 14 9YC CAI C8 C 0 1 N N N 35.490 -33.722 -36.659 1.423 -0.382 -0.950 CAI 9YC 15 9YC NAJ N2 N 0 1 N N N 36.934 -33.327 -36.761 2.067 0.243 0.209 NAJ 9YC 16 9YC CAK C9 C 0 1 N N N 37.772 -33.680 -37.745 2.912 1.190 0.038 CAK 9YC 17 9YC CAL C10 C 0 1 N N N 39.238 -33.289 -37.644 3.655 1.738 1.198 CAL 9YC 18 9YC OAO O6 O 0 1 N N N 40.090 -33.612 -38.493 4.456 2.635 1.036 OAO 9YC 19 9YC OAN O7 O 0 1 N N N 39.587 -32.648 -36.661 3.442 1.240 2.431 OAN 9YC 20 9YC CAM C11 C 0 1 N N N 37.230 -34.471 -38.916 3.151 1.747 -1.342 CAM 9YC 21 9YC CAP C12 C 0 1 N N N 38.062 -34.514 -40.070 2.143 2.780 -1.635 CAP 9YC 22 9YC NAQ N3 N 0 1 N N N 38.711 -34.658 -40.978 1.365 3.576 -1.861 NAQ 9YC 23 9YC H1 H1 H 0 1 N N N 32.744 -36.964 -38.316 -5.855 1.523 0.570 H1 9YC 24 9YC H2 H2 H 0 1 N N N 30.597 -34.290 -39.510 -3.170 1.951 2.174 H2 9YC 25 9YC H3 H3 H 0 1 N N N 33.587 -32.786 -38.142 -1.314 0.396 -1.274 H3 9YC 26 9YC H4 H4 H 0 1 N N N 32.045 -32.127 -37.498 -0.843 0.720 0.411 H4 9YC 27 9YC H5 H5 H 0 1 N N N 31.943 -31.118 -35.513 -2.561 -2.269 0.517 H5 9YC 28 9YC H6 H6 H 0 1 N N N 34.520 -30.313 -31.958 0.688 -5.768 -0.791 H6 9YC 29 9YC H7 H7 H 0 1 N N N 35.462 -31.830 -31.760 1.884 -5.196 0.397 H7 9YC 30 9YC H8 H8 H 0 1 N N N 36.190 -30.425 -32.610 0.295 -5.782 0.945 H8 9YC 31 9YC H9 H9 H 0 1 N N N 36.883 -32.482 -33.317 2.539 -3.285 -1.621 H9 9YC 32 9YC H10 H10 H 0 1 N N N 35.020 -33.656 -37.652 2.187 -0.751 -1.634 H10 9YC 33 9YC H11 H11 H 0 1 N N N 35.417 -34.754 -36.286 0.801 0.353 -1.460 H11 9YC 34 9YC H12 H12 H 0 1 N N N 40.522 -32.486 -36.704 3.950 1.629 3.155 H12 9YC 35 9YC H13 H13 H 0 1 N N N 36.268 -34.025 -39.209 4.146 2.188 -1.388 H13 9YC 36 9YC H14 H14 H 0 1 N N N 37.067 -35.505 -38.579 3.073 0.945 -2.076 H14 9YC 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9YC NAQ CAP TRIP N N 1 9YC CAP CAM SING N N 2 9YC OAV PAT DOUB N N 3 9YC CAM CAK SING N N 4 9YC OAW PAT SING N N 5 9YC OAO CAL DOUB N N 6 9YC PAT OAU SING N N 7 9YC PAT OAS SING N N 8 9YC CAK CAL SING N N 9 9YC CAK NAJ DOUB N N 10 9YC CAL OAN SING N N 11 9YC CAR OAS SING N N 12 9YC CAR CAA SING N N 13 9YC NAJ CAI SING N N 14 9YC CAI CAF SING N N 15 9YC CAA CAF DOUB Y N 16 9YC CAA CAB SING Y N 17 9YC CAF CAE SING Y N 18 9YC CAB NAC DOUB Y N 19 9YC CAE OAH SING N N 20 9YC CAE CAD DOUB Y N 21 9YC NAC CAD SING Y N 22 9YC CAD CAG SING N N 23 9YC OAU H1 SING N N 24 9YC OAW H2 SING N N 25 9YC CAR H3 SING N N 26 9YC CAR H4 SING N N 27 9YC CAB H5 SING N N 28 9YC CAG H6 SING N N 29 9YC CAG H7 SING N N 30 9YC CAG H8 SING N N 31 9YC OAH H9 SING N N 32 9YC CAI H10 SING N N 33 9YC CAI H11 SING N N 34 9YC OAN H12 SING N N 35 9YC CAM H13 SING N N 36 9YC CAM H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9YC InChI InChI 1.03 "InChI=1S/C12H14N3O7P/c1-7-11(16)9(5-15-10(2-3-13)12(17)18)8(4-14-7)6-22-23(19,20)21/h4,16H,2,5-6H2,1H3,(H,17,18)(H2,19,20,21)/b15-10+" 9YC InChIKey InChI 1.03 RXBCHSOWMGDFEL-XNTDXEJSSA-N 9YC SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN=C(CC#N)C(O)=O)c1O" 9YC SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN=C(CC#N)C(O)=O)c1O" 9YC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C/N=C(\CC#N)/C(=O)O)O" 9YC SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN=C(CC#N)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id 9YC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9YC "Create component" 2022-04-19 PDBJ 9YC "Initial release" 2023-04-05 RCSB #