data_9YN # _chem_comp.id 9YN _chem_comp.name "(2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-03 _chem_comp.pdbx_modified_date 2017-11-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9YN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ON3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9YN O O1 O 0 1 N N N 24.472 29.028 1.798 -1.689 -0.269 2.177 O 9YN 1 9YN C C1 C 0 1 N N N 23.395 28.900 2.366 -1.845 -0.495 0.996 C 9YN 2 9YN CA C2 C 0 1 N N S 22.238 29.795 2.003 -2.891 -1.484 0.550 CA 9YN 3 9YN CB C3 C 0 1 N N N 21.870 29.690 0.517 -4.140 -0.731 0.086 CB 9YN 4 9YN CG1 C4 C 0 1 N N N 20.559 28.934 0.295 -5.154 -1.726 -0.482 CG1 9YN 5 9YN CD1 C5 C 0 1 N N N 20.688 27.489 0.773 -6.450 -0.992 -0.830 CD1 9YN 6 9YN CD2 C6 C 0 1 N N N 20.097 29.047 -1.161 -4.580 -2.374 -1.744 CD2 9YN 7 9YN N N1 N 0 1 N N N 22.588 31.195 2.317 -3.239 -2.367 1.671 N 9YN 8 9YN NAI N2 N 0 1 N N N 23.155 28.011 3.334 -1.087 0.143 0.082 NAI 9YN 9 9YN CAJ C7 C 0 1 N N R 24.155 27.072 3.843 -0.075 1.109 0.515 CAJ 9YN 10 9YN CAK C8 C 0 1 N N S 23.978 25.684 3.237 -0.679 2.528 0.594 CAK 9YN 11 9YN OAL O2 O 0 1 N N N 23.053 25.653 2.144 -2.059 2.506 0.222 OAL 9YN 12 9YN CAM C9 C 0 1 N N R 23.485 24.790 4.370 0.144 3.344 -0.428 CAM 9YN 13 9YN CAN C10 C 0 1 N N N 24.366 23.562 4.574 0.381 4.763 0.091 CAN 9YN 14 9YN OAO O3 O 0 1 N N N 23.646 22.576 5.320 1.041 5.534 -0.915 OAO 9YN 15 9YN OAP O4 O 0 1 N N N 23.468 25.568 5.570 1.396 2.634 -0.543 OAP 9YN 16 9YN CAQ C11 C 0 1 N N R 23.889 26.916 5.342 1.042 1.234 -0.545 CAQ 9YN 17 9YN N9 N3 N 0 1 Y N N 25.093 27.183 6.174 2.197 0.415 -0.168 N9 9YN 18 9YN C8 C12 C 0 1 Y N N 26.370 26.842 5.895 3.299 0.840 0.512 C8 9YN 19 9YN N7 N4 N 0 1 Y N N 27.204 27.245 6.883 4.129 -0.149 0.676 N7 9YN 20 9YN C5 C13 C 0 1 Y N N 26.460 27.844 7.829 3.613 -1.268 0.114 C5 9YN 21 9YN C4 C14 C 0 1 Y N N 25.064 27.802 7.356 2.365 -0.921 -0.430 C4 9YN 22 9YN C6 C15 C 0 1 Y N N 26.748 28.491 9.132 4.046 -2.599 -0.016 C6 9YN 23 9YN N6 N5 N 0 1 N N N 28.020 28.545 9.590 5.263 -3.002 0.504 N6 9YN 24 9YN N1 N6 N 0 1 Y N N 25.727 29.019 9.851 3.259 -3.462 -0.650 N1 9YN 25 9YN C2 C16 C 0 1 Y N N 24.318 28.997 9.413 2.095 -3.087 -1.150 C2 9YN 26 9YN N3 N7 N 0 1 Y N N 24.074 28.348 8.111 1.644 -1.855 -1.041 N3 9YN 27 9YN H1 H1 H 0 1 N N N 21.362 29.500 2.599 -2.500 -2.080 -0.275 H1 9YN 28 9YN H2 H2 H 0 1 N N N 22.677 29.161 -0.011 -4.583 -0.206 0.933 H2 9YN 29 9YN H3 H3 H 0 1 N N N 21.767 30.705 0.106 -3.866 -0.012 -0.685 H3 9YN 30 9YN H4 H4 H 0 1 N N N 19.793 29.418 0.919 -5.361 -2.498 0.259 H4 9YN 31 9YN H5 H5 H 0 1 N N N 21.022 27.477 1.821 -6.242 -0.220 -1.572 H5 9YN 32 9YN H6 H6 H 0 1 N N N 19.712 26.988 0.694 -7.172 -1.701 -1.235 H6 9YN 33 9YN H7 H7 H 0 1 N N N 21.423 26.961 0.148 -6.859 -0.530 0.069 H7 9YN 34 9YN H8 H8 H 0 1 N N N 19.154 28.495 -1.291 -3.657 -2.897 -1.496 H8 9YN 35 9YN H9 H9 H 0 1 N N N 19.940 30.106 -1.415 -5.302 -3.083 -2.149 H9 9YN 36 9YN H10 H10 H 0 1 N N N 20.865 28.621 -1.823 -4.372 -1.602 -2.486 H10 9YN 37 9YN H11 H11 H 0 1 N N N 22.829 31.270 3.285 -3.605 -1.838 2.448 H11 9YN 38 9YN H12 H12 H 0 1 N N N 23.367 31.477 1.757 -3.891 -3.080 1.380 H12 9YN 39 9YN H14 H14 H 0 1 N N N 22.239 27.986 3.734 -1.212 -0.038 -0.863 H14 9YN 40 9YN H15 H15 H 0 1 N N N 25.177 27.441 3.670 0.344 0.816 1.478 H15 9YN 41 9YN H16 H16 H 0 1 N N N 24.961 25.319 2.905 -0.560 2.940 1.596 H16 9YN 42 9YN H17 H17 H 0 1 N N N 22.986 24.766 1.811 -2.489 3.372 0.253 H17 9YN 43 9YN H18 H18 H 0 1 N N N 22.466 24.453 4.130 -0.368 3.373 -1.390 H18 9YN 44 9YN H19 H19 H 0 1 N N N 24.649 23.147 3.595 -0.575 5.226 0.334 H19 9YN 45 9YN H20 H20 H 0 1 N N N 25.273 23.849 5.126 1.003 4.724 0.985 H20 9YN 46 9YN H21 H21 H 0 1 N N N 24.195 21.811 5.447 1.224 6.447 -0.654 H21 9YN 47 9YN H22 H22 H 0 1 N N N 23.089 27.613 5.631 0.669 0.938 -1.525 H22 9YN 48 9YN H23 H23 H 0 1 N N N 26.684 26.318 5.004 3.461 1.849 0.863 H23 9YN 49 9YN H24 H24 H 0 1 N N N 28.036 29.008 10.476 5.829 -2.362 0.965 H24 9YN 50 9YN H25 H25 H 0 1 N N N 28.377 27.617 9.693 5.551 -3.923 0.408 H25 9YN 51 9YN H26 H26 H 0 1 N N N 23.522 29.426 10.004 1.487 -3.820 -1.658 H26 9YN 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9YN CD2 CG1 SING N N 1 9YN CG1 CB SING N N 2 9YN CG1 CD1 SING N N 3 9YN CB CA SING N N 4 9YN O C DOUB N N 5 9YN CA N SING N N 6 9YN CA C SING N N 7 9YN OAL CAK SING N N 8 9YN C NAI SING N N 9 9YN CAK CAJ SING N N 10 9YN CAK CAM SING N N 11 9YN NAI CAJ SING N N 12 9YN CAJ CAQ SING N N 13 9YN CAM CAN SING N N 14 9YN CAM OAP SING N N 15 9YN CAN OAO SING N N 16 9YN CAQ OAP SING N N 17 9YN CAQ N9 SING N N 18 9YN C8 N9 SING Y N 19 9YN C8 N7 DOUB Y N 20 9YN N9 C4 SING Y N 21 9YN N7 C5 SING Y N 22 9YN C4 C5 DOUB Y N 23 9YN C4 N3 SING Y N 24 9YN C5 C6 SING Y N 25 9YN N3 C2 DOUB Y N 26 9YN C6 N6 SING N N 27 9YN C6 N1 DOUB Y N 28 9YN C2 N1 SING Y N 29 9YN CA H1 SING N N 30 9YN CB H2 SING N N 31 9YN CB H3 SING N N 32 9YN CG1 H4 SING N N 33 9YN CD1 H5 SING N N 34 9YN CD1 H6 SING N N 35 9YN CD1 H7 SING N N 36 9YN CD2 H8 SING N N 37 9YN CD2 H9 SING N N 38 9YN CD2 H10 SING N N 39 9YN N H11 SING N N 40 9YN N H12 SING N N 41 9YN NAI H14 SING N N 42 9YN CAJ H15 SING N N 43 9YN CAK H16 SING N N 44 9YN OAL H17 SING N N 45 9YN CAM H18 SING N N 46 9YN CAN H19 SING N N 47 9YN CAN H20 SING N N 48 9YN OAO H21 SING N N 49 9YN CAQ H22 SING N N 50 9YN C8 H23 SING N N 51 9YN N6 H24 SING N N 52 9YN N6 H25 SING N N 53 9YN C2 H26 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9YN InChI InChI 1.03 "InChI=1S/C16H25N7O4/c1-7(2)3-8(17)15(26)22-10-12(25)9(4-24)27-16(10)23-6-21-11-13(18)19-5-20-14(11)23/h5-10,12,16,24-25H,3-4,17H2,1-2H3,(H,22,26)(H2,18,19,20)/t8-,9+,10+,12+,16+/m0/s1" 9YN InChIKey InChI 1.03 NMAIYRCXMINABF-GBPQWNHNSA-N 9YN SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N)C(=O)N[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(N)ncnc23" 9YN SMILES CACTVS 3.385 "CC(C)C[CH](N)C(=O)N[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(N)ncnc23" 9YN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)CO)O)N" 9YN SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NC1C(C(OC1n2cnc3c2ncnc3N)CO)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9YN "Create component" 2017-08-03 EBI 9YN "Other modification" 2017-08-09 EBI 9YN "Initial release" 2017-11-15 RCSB #