data_9Z6 # _chem_comp.id 9Z6 _chem_comp.name "(5R,12R,17R)-17-amino-12-carboxy-1,1,5-trihydroxy-4,4-dimethyl-6,10-dioxo-2-oxa-14,15-dithia-7,11-diaza-1-phosphaoctadecan-18-oic acid 1-oxide (non-preferred name)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H28 N3 O11 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-31 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9Z6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AIP _chem_comp.pdbx_subcomponent_list "2JD BAL CYS CYS" _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9Z6 C11 C6 C 0 1 N N N -12.924 -0.888 19.530 3.436 -2.096 -1.104 C16 2JD 1 9Z6 O12 O5 O 0 1 N N N -13.032 -0.371 20.600 3.743 -2.903 -0.253 O3 2JD 2 9Z6 C10 C5 C 0 1 N N R -14.139 -1.320 18.717 4.494 -1.508 -2.001 C17 2JD 3 9Z6 O32 O11 O 0 1 N N N -15.118 -0.317 18.841 5.733 -2.188 -1.787 O4 2JD 4 9Z6 C02 C2 C 0 1 N N N -14.644 -2.693 19.156 4.666 -0.022 -1.681 C18 2JD 5 9Z6 C04 C4 C 0 1 N N N -15.819 -3.018 18.233 4.949 0.148 -0.187 C19 2JD 6 9Z6 C01 C1 C 0 1 N N N -13.567 -3.802 18.973 5.836 0.543 -2.489 C20 2JD 7 9Z6 C03 C3 C 0 1 N N N -15.156 -2.629 20.610 3.384 0.730 -2.045 C21 2JD 8 9Z6 P06 P1 P 0 1 N N N -17.163 -5.014 17.385 5.420 2.083 1.595 P 2JD 9 9Z6 O09 O4 O 0 1 N N N -16.259 -5.419 16.294 4.387 1.586 2.531 O1P 2JD 10 9Z6 O05 O1 O 0 1 N N N -16.338 -4.268 18.576 5.110 1.536 0.113 O2P 2JD 11 9Z6 O07 O2 O 0 1 N N N -18.074 -4.058 16.761 5.407 3.693 1.586 O3P 2JD 12 9Z6 O08 O3 O 0 1 N N N -17.928 -6.302 18.044 6.868 1.561 2.067 OXT 2JD 13 9Z6 N13 N1 N 0 1 N N N -11.638 -1.141 18.938 2.147 -1.730 -1.252 N BAL 14 9Z6 C14 C7 C 0 1 N N N -10.428 -0.763 19.621 1.132 -2.231 -0.323 CB BAL 15 9Z6 C15 C8 C 0 1 N N N -9.882 -1.931 20.420 -0.237 -1.668 -0.710 CA BAL 16 9Z6 C16 C9 C 0 1 N N N -8.388 -1.860 20.721 -1.281 -2.184 0.246 C BAL 17 9Z6 O17 O6 O 0 1 N N N -7.767 -2.851 20.905 -0.962 -2.929 1.148 O BAL 18 9Z6 N18 N2 N 0 1 N N N -7.774 -0.543 20.803 -2.570 -1.817 0.099 N CYS 19 9Z6 C19 C10 C 0 1 N N R -6.367 -0.311 21.088 -3.585 -2.319 1.028 CA CYS 20 9Z6 C20 C11 C 0 1 N N N -6.049 -0.509 22.582 -4.067 -3.669 0.565 C CYS 21 9Z6 O21 O7 O 0 1 N N N -6.396 -1.548 23.211 -3.609 -4.162 -0.439 O CYS 22 9Z6 C23 C12 C 0 1 N N N -6.061 1.132 20.676 -4.764 -1.344 1.071 CB CYS 23 9Z6 S24 S1 S 0 1 N N N -5.409 1.227 18.988 -4.184 0.282 1.629 SG CYS 24 9Z6 O22 O8 O 0 1 N N N -5.423 0.341 23.273 -5.004 -4.325 1.267 OXT CYS 25 9Z6 N28 N3 N 0 1 N N N -1.013 1.506 22.271 -5.441 2.669 0.883 N CYS 26 9Z6 C27 C14 C 0 1 N N R -1.497 1.284 20.920 -4.824 2.979 -0.414 CA CYS 27 9Z6 C29 C15 C 0 1 N N N -0.469 1.704 19.861 -5.852 3.603 -1.322 C CYS 28 9Z6 O31 O10 O 0 1 N N N -0.567 1.027 18.805 -7.029 3.453 -1.096 O CYS 29 9Z6 C26 C13 C 0 1 N N N -2.785 2.088 20.795 -4.298 1.691 -1.049 CB CYS 30 9Z6 S25 S2 S 0 1 N N N -3.490 2.069 19.111 -3.060 0.939 0.045 SG CYS 31 9Z6 O30 O9 O 0 1 N N N 0.294 2.647 20.200 -5.459 4.326 -2.383 OXT CYS 32 9Z6 H11 H11 H 0 1 N N N -13.829 -1.398 17.665 4.193 -1.622 -3.043 H15 2JD 33 9Z6 H29 H29 H 0 1 N N N -14.903 0.247 19.575 6.062 -2.128 -0.879 H16 2JD 34 9Z6 H7 H7 H 0 1 N N N -15.473 -3.037 17.189 4.116 -0.254 0.389 H17 2JD 35 9Z6 H8 H8 H 0 1 N N N -16.600 -2.251 18.347 5.863 -0.387 0.073 H18 2JD 36 9Z6 H1 H1 H 0 1 N N N -12.708 -3.592 19.628 5.607 0.477 -3.553 H19 2JD 37 9Z6 H2 H2 H 0 1 N N N -13.998 -4.779 19.237 5.996 1.586 -2.216 H20 2JD 38 9Z6 H3 H3 H 0 1 N N N -13.233 -3.819 17.925 6.736 -0.032 -2.275 H21 2JD 39 9Z6 H4 H4 H 0 1 N N N -14.319 -2.396 21.284 2.575 0.408 -1.390 H22 2JD 40 9Z6 H5 H5 H 0 1 N N N -15.924 -1.846 20.694 3.544 1.802 -1.924 H23 2JD 41 9Z6 H6 H6 H 0 1 N N N -15.591 -3.600 20.888 3.120 0.517 -3.081 H24 2JD 42 9Z6 H10 H10 H 0 1 N N N -17.651 -7.096 17.601 7.595 1.849 1.499 H27 2JD 43 9Z6 H9 H9 H 0 1 N N N -17.847 -3.955 15.844 5.587 4.093 2.448 H4 2JD 44 9Z6 H12 H12 H 0 1 N N N -11.584 -1.584 18.043 1.892 -1.134 -1.974 H BAL 45 9Z6 H14 H14 H 0 1 N N N -10.643 0.073 20.303 1.103 -3.320 -0.369 HB3 BAL 46 9Z6 H13 H13 H 0 1 N N N -9.678 -0.448 18.881 1.381 -1.917 0.691 HB2 BAL 47 9Z6 H15 H15 H 0 1 N N N -10.422 -1.972 21.377 -0.208 -0.579 -0.663 HA1 BAL 48 9Z6 H16 H16 H 0 1 N N N -10.073 -2.853 19.851 -0.485 -1.982 -1.724 HA2 BAL 49 9Z6 H17 H17 H 0 1 N N N -8.358 0.255 20.654 -2.825 -1.221 -0.623 H2 CYS 50 9Z6 H18 H18 H 0 1 N N N -5.742 -0.995 20.495 -3.152 -2.409 2.024 HA CYS 51 9Z6 H20 H20 H 0 1 N N N -5.316 1.550 21.369 -5.196 -1.253 0.074 HB2 CYS 52 9Z6 H21 H21 H 0 1 N N N -6.987 1.723 20.734 -5.519 -1.717 1.762 HB3 CYS 53 9Z6 H19 H19 H 0 1 N N N -5.332 0.021 24.163 -5.282 -5.188 0.930 HXT CYS 54 9Z6 H25 H25 H 0 1 N N N -1.711 1.220 22.927 -5.739 3.511 1.352 H CYS 55 9Z6 H26 H26 H 0 1 N N N -0.179 0.973 22.418 -6.209 2.025 0.774 H2 CYS 56 9Z6 H24 H24 H 0 1 N N N -1.730 0.218 20.780 -3.999 3.675 -0.266 HA CYS 57 9Z6 H22 H22 H 0 1 N N N -2.573 3.131 21.073 -5.123 0.994 -1.196 HB2 CYS 58 9Z6 H23 H23 H 0 1 N N N -3.528 1.667 21.489 -3.840 1.921 -2.011 HB3 CYS 59 9Z6 H28 H28 H 0 1 N N N 0.889 2.846 19.487 -6.155 4.707 -2.936 HXT CYS 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9Z6 O09 P06 DOUB N N 1 9Z6 O07 P06 SING N N 2 9Z6 P06 O08 SING N N 3 9Z6 P06 O05 SING N N 4 9Z6 C04 O05 SING N N 5 9Z6 C04 C02 SING N N 6 9Z6 C10 O32 SING N N 7 9Z6 C10 C02 SING N N 8 9Z6 C10 C11 SING N N 9 9Z6 O31 C29 DOUB N N 10 9Z6 N13 C11 SING N N 11 9Z6 N13 C14 SING N N 12 9Z6 C01 C02 SING N N 13 9Z6 S24 S25 SING N N 14 9Z6 S24 C23 SING N N 15 9Z6 S25 C26 SING N N 16 9Z6 C02 C03 SING N N 17 9Z6 C11 O12 DOUB N N 18 9Z6 C14 C15 SING N N 19 9Z6 C29 O30 SING N N 20 9Z6 C29 C27 SING N N 21 9Z6 C15 C16 SING N N 22 9Z6 C23 C19 SING N N 23 9Z6 C16 N18 SING N N 24 9Z6 C16 O17 DOUB N N 25 9Z6 C26 C27 SING N N 26 9Z6 N18 C19 SING N N 27 9Z6 C27 N28 SING N N 28 9Z6 C19 C20 SING N N 29 9Z6 C20 O21 DOUB N N 30 9Z6 C20 O22 SING N N 31 9Z6 C01 H1 SING N N 32 9Z6 C01 H2 SING N N 33 9Z6 C01 H3 SING N N 34 9Z6 C03 H4 SING N N 35 9Z6 C03 H5 SING N N 36 9Z6 C03 H6 SING N N 37 9Z6 C04 H7 SING N N 38 9Z6 C04 H8 SING N N 39 9Z6 O07 H9 SING N N 40 9Z6 O08 H10 SING N N 41 9Z6 C10 H11 SING N N 42 9Z6 N13 H12 SING N N 43 9Z6 C14 H13 SING N N 44 9Z6 C14 H14 SING N N 45 9Z6 C15 H15 SING N N 46 9Z6 C15 H16 SING N N 47 9Z6 N18 H17 SING N N 48 9Z6 C19 H18 SING N N 49 9Z6 O22 H19 SING N N 50 9Z6 C23 H20 SING N N 51 9Z6 C23 H21 SING N N 52 9Z6 C26 H22 SING N N 53 9Z6 C26 H23 SING N N 54 9Z6 C27 H24 SING N N 55 9Z6 N28 H25 SING N N 56 9Z6 N28 H26 SING N N 57 9Z6 O30 H28 SING N N 58 9Z6 O32 H29 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9Z6 SMILES ACDLabs 12.01 "C(=O)(C(O)C(C)(COP(O)(=O)O)C)NCCC(NC(C(=O)O)CSSCC(N)C(O)=O)=O" 9Z6 InChI InChI 1.03 "InChI=1S/C15H28N3O11PS2/c1-15(2,7-29-30(26,27)28)11(20)12(21)17-4-3-10(19)18-9(14(24)25)6-32-31-5-8(16)13(22)23/h8-9,11,20H,3-7,16H2,1-2H3,(H,17,21)(H,18,19)(H,22,23)(H,24,25)(H2,26,27,28)/t8-,9-,11-/m0/s1" 9Z6 InChIKey InChI 1.03 CPEJIRBCDSQQLS-QXEWZRGKSA-N 9Z6 SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)N[C@@H](CSSC[C@H](N)C(O)=O)C(O)=O" 9Z6 SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)N[CH](CSSC[CH](N)C(O)=O)C(O)=O" 9Z6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)N[C@@H](CSSC[C@@H](C(=O)O)N)C(=O)O)O" 9Z6 SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NC(CSSCC(C(=O)O)N)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9Z6 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,12R,17R)-17-amino-12-carboxy-1,1,5-trihydroxy-4,4-dimethyl-6,10-dioxo-2-oxa-14,15-dithia-7,11-diaza-1-phosphaoctadecan-18-oic acid 1-oxide (non-preferred name)" 9Z6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-azanyl-3-[[(2~{R})-2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]-3-oxidanyl-3-oxidanylidene-propyl]disulfanyl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9Z6 "Create component" 2018-08-31 PDBJ 9Z6 "Initial release" 2019-03-20 RCSB ##