data_9ZA # _chem_comp.id 9ZA _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{S})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-28 _chem_comp.pdbx_modified_date 2017-10-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 432.326 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9ZA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WA8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9ZA O3P O1 O 0 1 N N N -30.926 3.732 -22.638 3.471 -2.635 -0.892 O3P 9ZA 1 9ZA P P1 P 0 1 N N N -31.593 3.841 -23.978 3.156 -1.690 0.373 P 9ZA 2 9ZA O2P O2 O 0 1 N N N -32.375 2.669 -24.516 2.861 -2.530 1.555 O2P 9ZA 3 9ZA "O5'" O3 O 0 1 N N N -30.405 4.200 -24.991 1.883 -0.761 0.044 "O5'" 9ZA 4 9ZA "C5'" C1 C 0 1 N N N -30.569 3.983 -26.388 1.225 0.037 1.032 "C5'" 9ZA 5 9ZA "C4'" C2 C 0 1 N N R -29.589 4.893 -27.108 0.062 0.791 0.386 "C4'" 9ZA 6 9ZA "C3'" C3 C 0 1 N N S -30.023 6.364 -27.141 -0.610 1.727 1.416 "C3'" 9ZA 7 9ZA "O3'" O4 O 0 1 N N N -29.042 7.178 -26.475 -0.132 3.065 1.263 "O3'" 9ZA 8 9ZA "C2'" C4 C 0 1 N N R -30.138 6.668 -28.633 -2.114 1.646 1.071 "C2'" 9ZA 9 9ZA "O2'" O5 O 0 1 N N N -29.690 7.968 -29.024 -2.612 2.933 0.698 "O2'" 9ZA 10 9ZA "C1'" C5 C 0 1 N N R -29.241 5.596 -29.229 -2.173 0.672 -0.127 "C1'" 9ZA 11 9ZA "O4'" O6 O 0 1 N N N -29.508 4.440 -28.460 -0.977 -0.131 -0.011 "O4'" 9ZA 12 9ZA N9 N1 N 0 1 Y N N -29.552 5.253 -30.623 -3.366 -0.174 -0.038 N9 9ZA 13 9ZA C4 C6 C 0 1 Y N N -28.621 5.065 -31.546 -4.623 0.146 -0.484 C4 9ZA 14 9ZA C5 C7 C 0 1 Y N N -29.352 4.720 -32.752 -5.433 -0.963 -0.187 C5 9ZA 15 9ZA N7 N2 N 0 1 Y N N -30.660 4.728 -32.452 -4.644 -1.885 0.415 N7 9ZA 16 9ZA C8 C8 C 0 1 Y N N -30.775 5.037 -31.138 -3.429 -1.426 0.498 C8 9ZA 17 9ZA N3 N3 N 0 1 Y N N -27.273 5.145 -31.538 -5.166 1.200 -1.085 N3 9ZA 18 9ZA C2 C9 C 0 1 Y N N -26.599 4.898 -32.671 -6.444 1.210 -1.398 C2 9ZA 19 9ZA N1 N4 N 0 1 Y N N -27.204 4.576 -33.831 -7.245 0.192 -1.138 N1 9ZA 20 9ZA C6 C10 C 0 1 Y N N -28.544 4.475 -33.945 -6.793 -0.903 -0.537 C6 9ZA 21 9ZA N6 N5 N 0 1 N N N -29.146 4.162 -35.121 -7.640 -1.965 -0.269 N6 9ZA 22 9ZA N2 N6 N 0 1 N N N -32.694 5.164 -24.000 4.492 -0.718 0.693 N2 9ZA 23 9ZA C3 C11 C 0 1 N N S -32.432 6.350 -23.212 4.814 0.132 -0.461 C3 9ZA 24 9ZA C7 C12 C 0 1 N N N -33.423 7.380 -23.608 6.308 0.303 -0.557 C7 9ZA 25 9ZA C9 C13 C 0 1 N N N -31.038 6.935 -23.414 4.154 1.501 -0.286 C9 9ZA 26 9ZA O10 O7 O 0 1 N N N -34.063 7.334 -24.640 7.030 -0.229 0.252 O10 9ZA 27 9ZA O11 O8 O 0 1 N N N -33.619 8.467 -22.707 6.836 1.045 -1.543 O11 9ZA 28 9ZA C12 C14 C 0 1 N N N -34.479 9.534 -23.112 8.283 1.166 -1.574 C12 9ZA 29 9ZA H1 H1 H 0 1 N N N -31.093 2.873 -22.269 3.673 -2.151 -1.704 H1 9ZA 30 9ZA H2 H2 H 0 1 N N N -31.599 4.227 -26.688 0.846 -0.607 1.825 H2 9ZA 31 9ZA H3 H3 H 0 1 N N N -30.355 2.932 -26.633 1.934 0.751 1.451 H3 9ZA 32 9ZA H4 H4 H 0 1 N N N -28.606 4.822 -26.620 0.411 1.362 -0.474 H4 9ZA 33 9ZA H5 H5 H 0 1 N N N -31.009 6.468 -26.665 -0.429 1.371 2.430 H5 9ZA 34 9ZA H6 H6 H 0 1 N N N -29.012 6.948 -25.554 -0.522 3.694 1.885 H6 9ZA 35 9ZA H7 H7 H 0 1 N N N -31.175 6.500 -28.960 -2.679 1.249 1.914 H7 9ZA 36 9ZA H8 H8 H 0 1 N N N -30.259 8.627 -28.645 -2.543 3.598 1.395 H8 9ZA 37 9ZA H9 H9 H 0 1 N N N -28.188 5.901 -29.136 -2.168 1.224 -1.066 H9 9ZA 38 9ZA H10 H10 H 0 1 N N N -31.704 5.100 -30.590 -2.595 -1.956 0.934 H10 9ZA 39 9ZA H11 H11 H 0 1 N N N -25.521 4.960 -32.653 -6.853 2.082 -1.885 H11 9ZA 40 9ZA H12 H12 H 0 1 N N N -28.451 4.032 -35.828 -8.576 -1.914 -0.521 H12 9ZA 41 9ZA H13 H13 H 0 1 N N N -29.672 3.318 -35.012 -7.299 -2.759 0.170 H13 9ZA 42 9ZA H14 H14 H 0 1 N N N -32.765 5.462 -24.952 4.344 -0.161 1.522 H14 9ZA 43 9ZA H15 H15 H 0 1 N N N -32.562 6.118 -22.145 4.442 -0.337 -1.372 H15 9ZA 44 9ZA H16 H16 H 0 1 N N N -30.920 7.828 -22.783 4.525 1.970 0.625 H16 9ZA 45 9ZA H17 H17 H 0 1 N N N -30.282 6.186 -23.134 4.393 2.131 -1.143 H17 9ZA 46 9ZA H18 H18 H 0 1 N N N -30.906 7.212 -24.470 3.073 1.377 -0.217 H18 9ZA 47 9ZA H19 H19 H 0 1 N N N -34.527 10.290 -22.314 8.630 1.622 -0.646 H19 9ZA 48 9ZA H20 H20 H 0 1 N N N -34.085 9.994 -24.030 8.728 0.177 -1.682 H20 9ZA 49 9ZA H21 H21 H 0 1 N N N -35.488 9.139 -23.304 8.577 1.791 -2.417 H21 9ZA 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9ZA N6 C6 SING N N 1 9ZA C6 N1 DOUB Y N 2 9ZA C6 C5 SING Y N 3 9ZA N1 C2 SING Y N 4 9ZA C5 N7 SING Y N 5 9ZA C5 C4 DOUB Y N 6 9ZA C2 N3 DOUB Y N 7 9ZA N7 C8 DOUB Y N 8 9ZA C4 N3 SING Y N 9 9ZA C4 N9 SING Y N 10 9ZA C8 N9 SING Y N 11 9ZA N9 "C1'" SING N N 12 9ZA "C1'" "C2'" SING N N 13 9ZA "C1'" "O4'" SING N N 14 9ZA "O2'" "C2'" SING N N 15 9ZA "C2'" "C3'" SING N N 16 9ZA "O4'" "C4'" SING N N 17 9ZA "C3'" "C4'" SING N N 18 9ZA "C3'" "O3'" SING N N 19 9ZA "C4'" "C5'" SING N N 20 9ZA "C5'" "O5'" SING N N 21 9ZA "O5'" P SING N N 22 9ZA O10 C7 DOUB N N 23 9ZA O2P P DOUB N N 24 9ZA N2 P SING N N 25 9ZA N2 C3 SING N N 26 9ZA P O3P SING N N 27 9ZA C7 C3 SING N N 28 9ZA C7 O11 SING N N 29 9ZA C9 C3 SING N N 30 9ZA C12 O11 SING N N 31 9ZA O3P H1 SING N N 32 9ZA "C5'" H2 SING N N 33 9ZA "C5'" H3 SING N N 34 9ZA "C4'" H4 SING N N 35 9ZA "C3'" H5 SING N N 36 9ZA "O3'" H6 SING N N 37 9ZA "C2'" H7 SING N N 38 9ZA "O2'" H8 SING N N 39 9ZA "C1'" H9 SING N N 40 9ZA C8 H10 SING N N 41 9ZA C2 H11 SING N N 42 9ZA N6 H12 SING N N 43 9ZA N6 H13 SING N N 44 9ZA N2 H14 SING N N 45 9ZA C3 H15 SING N N 46 9ZA C9 H16 SING N N 47 9ZA C9 H17 SING N N 48 9ZA C9 H18 SING N N 49 9ZA C12 H19 SING N N 50 9ZA C12 H20 SING N N 51 9ZA C12 H21 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9ZA SMILES ACDLabs 12.01 "OP(=O)(OCC1C(O)C(O)C(O1)n3c2ncnc(c2nc3)N)NC(C(OC)=O)C" 9ZA InChI InChI 1.03 "InChI=1S/C14H21N6O8P/c1-6(14(23)26-2)19-29(24,25)27-3-7-9(21)10(22)13(28-7)20-5-18-8-11(15)16-4-17-12(8)20/h4-7,9-10,13,21-22H,3H2,1-2H3,(H2,15,16,17)(H2,19,24,25)/t6-,7+,9+,10+,13+/m0/s1" 9ZA InChIKey InChI 1.03 KHSIAISBDZSYJB-WFMPWKQPSA-N 9ZA SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H](C)N[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 9ZA SMILES CACTVS 3.385 "COC(=O)[CH](C)N[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 9ZA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H](C(=O)OC)NP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 9ZA SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(=O)OC)NP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9ZA "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoate (non-preferred name)" 9ZA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{S})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9ZA "Create component" 2017-06-28 RCSB 9ZA "Initial release" 2017-10-18 RCSB #