data_A1AMF # _chem_comp.id A1AMF _chem_comp.name "4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H0E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMF N1 N1 N 0 1 Y N N N N N 4.959 -7.935 19.492 5.774 0.199 1.273 N1 A1AMF 1 A1AMF N3 N2 N 0 1 Y N N N N N 8.891 -7.024 19.059 2.599 2.470 0.162 N3 A1AMF 2 A1AMF C4 C1 C 0 1 Y N N N N N 6.251 -7.502 19.371 4.815 1.124 0.947 C4 A1AMF 3 A1AMF C5 C2 C 0 1 Y N N N N N 8.019 -6.151 19.566 3.678 3.094 0.599 C5 A1AMF 4 A1AMF C6 C3 C 0 1 Y N N N N N 8.416 -8.244 18.701 2.559 1.142 0.090 C6 A1AMF 5 A1AMF C7 C4 C 0 1 N N S N N N 10.688 -8.972 17.886 0.213 1.255 -0.667 C7 A1AMF 6 A1AMF C8 C5 C 0 1 Y N N N N N 10.877 -8.808 16.387 -0.989 0.354 -0.544 C8 A1AMF 7 A1AMF C10 C6 C 0 1 Y N N N N N 11.544 -7.466 14.495 -2.042 -1.761 -0.896 C10 A1AMF 8 A1AMF C13 C7 C 0 1 Y N N N N N 10.386 -9.758 15.499 -2.155 0.825 0.024 C13 A1AMF 9 A1AMF C15 C8 C 0 1 N N N N N N 10.369 -9.024 11.208 -5.398 -1.944 0.789 C15 A1AMF 10 A1AMF C17 C9 C 0 1 N N N N N N 11.569 -10.103 18.469 0.294 1.806 -2.092 C17 A1AMF 11 A1AMF C20 C10 C 0 1 Y N N N N N 7.026 -8.536 18.827 3.690 0.420 0.489 C20 A1AMF 12 A1AMF O2 O1 O 0 1 N N N N N N 10.250 -12.088 13.633 -4.397 0.651 2.306 O2 A1AMF 13 A1AMF S S1 S 0 1 N N N N N N 9.791 -10.815 13.158 -4.707 0.665 0.919 S A1AMF 14 A1AMF O1 O2 O 0 1 N N N N N N 8.366 -10.600 13.107 -4.948 1.886 0.233 O1 A1AMF 15 A1AMF C14 C11 C 0 1 N N N N N N 10.455 -10.503 11.561 -6.000 -0.554 0.539 C14 A1AMF 16 A1AMF C16 C12 C 0 1 N N N N N N 11.314 -8.214 12.102 -4.378 -2.249 -0.291 C16 A1AMF 17 A1AMF C11 C13 C 0 1 Y N N N N N 11.085 -8.417 13.583 -3.224 -1.291 -0.326 C11 A1AMF 18 A1AMF C9 C14 C 0 1 Y N N N N N 11.445 -7.656 15.865 -0.935 -0.948 -1.005 C9 A1AMF 19 A1AMF C12 C15 C 0 1 Y N N N N N 10.487 -9.570 14.126 -3.267 0.002 0.141 C12 A1AMF 20 A1AMF C19 C16 C 0 1 N N N N N N 13.024 -9.967 18.023 0.297 0.644 -3.088 C19 A1AMF 21 A1AMF C18 C17 C 0 1 N N N N N N 11.473 -10.159 20.017 -0.914 2.705 -2.360 C18 A1AMF 22 A1AMF N4 N3 N 0 1 N N N N N N 9.295 -9.191 18.260 1.427 0.491 -0.368 N4 A1AMF 23 A1AMF N2 N4 N 0 1 Y N N N N N 6.709 -6.306 19.774 4.761 2.454 0.984 N2 A1AMF 24 A1AMF C3 C18 C 0 1 Y N N N N N 4.884 -9.225 19.029 5.320 -1.059 1.041 C3 A1AMF 25 A1AMF C2 C19 C 0 1 Y N N N N N 6.125 -9.653 18.613 4.044 -1.006 0.563 C2 A1AMF 26 A1AMF C1 C20 C 0 1 N N N N N N 6.462 -10.998 18.097 3.195 -2.146 0.189 C1 A1AMF 27 A1AMF O O3 O 0 1 N N N N N N 7.527 -11.219 17.531 1.998 -2.109 0.405 O A1AMF 28 A1AMF N N5 N 0 1 N N N N N N 5.527 -11.934 18.237 3.742 -3.231 -0.394 N A1AMF 29 A1AMF C C21 C 0 1 N N N N N N 5.614 -13.205 17.543 2.895 -4.367 -0.767 C A1AMF 30 A1AMF H H1 H 0 1 N N N N N N 4.196 -7.401 19.857 6.655 0.415 1.617 H A1AMF 31 A1AMF H7 H2 H 0 1 N N N N N N 8.427 -5.191 19.846 3.671 4.173 0.642 H7 A1AMF 32 A1AMF H1 H3 H 0 1 N N N N N N 11.020 -8.036 18.358 0.122 2.081 0.038 H1 A1AMF 33 A1AMF H10 H4 H 0 1 N N N N N N 11.989 -6.555 14.123 -1.991 -2.779 -1.254 H10 A1AMF 34 A1AMF H11 H5 H 0 1 N N N N N N 9.920 -10.654 15.881 -2.204 1.843 0.382 H11 A1AMF 35 A1AMF H14 H6 H 0 1 N N N N N N 10.655 -8.884 10.155 -4.907 -1.959 1.763 H14 A1AMF 36 A1AMF H15 H7 H 0 1 N N N N N N 9.337 -8.674 11.357 -6.189 -2.694 0.768 H15 A1AMF 37 A1AMF H18 H8 H 0 1 N N N N N N 11.185 -11.057 18.079 1.211 2.385 -2.206 H18 A1AMF 38 A1AMF H12 H9 H 0 1 N N N N N N 11.510 -10.815 11.544 -6.303 -0.462 -0.504 H12 A1AMF 39 A1AMF H13 H10 H 0 1 N N N N N N 9.889 -11.083 10.817 -6.860 -0.399 1.192 H13 A1AMF 40 A1AMF H16 H11 H 0 1 N N N N N N 12.348 -8.508 11.868 -3.995 -3.257 -0.134 H16 A1AMF 41 A1AMF H17 H12 H 0 1 N N N N N N 11.176 -7.147 11.874 -4.878 -2.215 -1.260 H17 A1AMF 42 A1AMF H9 H13 H 0 1 N N N N N N 11.816 -6.895 16.536 -0.027 -1.327 -1.449 H9 A1AMF 43 A1AMF H23 H14 H 0 1 N N N N N N 13.619 -10.785 18.455 -0.619 0.065 -2.974 H23 A1AMF 44 A1AMF H22 H15 H 0 1 N N N N N N 13.077 -10.016 16.925 0.355 1.037 -4.103 H22 A1AMF 45 A1AMF H24 H16 H 0 1 N N N N N N 13.424 -9.002 18.367 1.158 0.004 -2.897 H24 A1AMF 46 A1AMF H20 H17 H 0 1 N N N N N N 12.110 -10.972 20.395 -0.916 3.532 -1.651 H20 A1AMF 47 A1AMF H21 H18 H 0 1 N N N N N N 11.811 -9.201 20.440 -0.856 3.098 -3.376 H21 A1AMF 48 A1AMF H19 H19 H 0 1 N N N N N N 10.430 -10.343 20.313 -1.830 2.126 -2.246 H19 A1AMF 49 A1AMF H8 H20 H 0 1 N N N N N N 9.325 -9.877 18.987 1.438 -0.471 -0.492 H8 A1AMF 50 A1AMF H6 H21 H 0 1 N N N N N N 3.982 -9.818 18.996 5.883 -1.965 1.214 H6 A1AMF 51 A1AMF H5 H22 H 0 1 N N N N N N 4.745 -11.757 18.835 4.696 -3.260 -0.566 H5 A1AMF 52 A1AMF H3 H23 H 0 1 N N N N N N 4.742 -13.824 17.801 2.407 -4.764 0.123 H3 A1AMF 53 A1AMF H2 H24 H 0 1 N N N N N N 5.631 -13.029 16.457 2.139 -4.038 -1.480 H2 A1AMF 54 A1AMF H4 H25 H 0 1 N N N N N N 6.535 -13.725 17.845 3.510 -5.144 -1.222 H4 A1AMF 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMF C N SING N N 1 A1AMF N C1 SING N N 2 A1AMF O C1 DOUB N N 3 A1AMF C1 C2 SING N N 4 A1AMF C2 C3 DOUB Y N 5 A1AMF C3 N1 SING Y N 6 A1AMF N1 C4 SING Y N 7 A1AMF C4 N2 DOUB Y N 8 A1AMF N2 C5 SING Y N 9 A1AMF C5 N3 DOUB Y N 10 A1AMF N3 C6 SING Y N 11 A1AMF C6 N4 SING N N 12 A1AMF N4 C7 SING N N 13 A1AMF C7 C8 SING N N 14 A1AMF C8 C9 DOUB Y N 15 A1AMF C9 C10 SING Y N 16 A1AMF C10 C11 DOUB Y N 17 A1AMF C11 C12 SING Y N 18 A1AMF C13 C12 DOUB Y N 19 A1AMF C8 C13 SING Y N 20 A1AMF C12 S SING N N 21 A1AMF O1 S DOUB N N 22 A1AMF S O2 DOUB N N 23 A1AMF C14 S SING N N 24 A1AMF C15 C14 SING N N 25 A1AMF C16 C15 SING N N 26 A1AMF C11 C16 SING N N 27 A1AMF C17 C7 SING N N 28 A1AMF C18 C17 SING N N 29 A1AMF C19 C17 SING N N 30 A1AMF C20 C6 DOUB Y N 31 A1AMF C2 C20 SING Y N 32 A1AMF C4 C20 SING Y N 33 A1AMF N1 H SING N N 34 A1AMF C5 H7 SING N N 35 A1AMF C7 H1 SING N N 36 A1AMF C10 H10 SING N N 37 A1AMF C13 H11 SING N N 38 A1AMF C15 H14 SING N N 39 A1AMF C15 H15 SING N N 40 A1AMF C17 H18 SING N N 41 A1AMF C14 H12 SING N N 42 A1AMF C14 H13 SING N N 43 A1AMF C16 H16 SING N N 44 A1AMF C16 H17 SING N N 45 A1AMF C9 H9 SING N N 46 A1AMF C19 H23 SING N N 47 A1AMF C19 H22 SING N N 48 A1AMF C19 H24 SING N N 49 A1AMF C18 H20 SING N N 50 A1AMF C18 H21 SING N N 51 A1AMF C18 H19 SING N N 52 A1AMF N4 H8 SING N N 53 A1AMF C3 H6 SING N N 54 A1AMF N H5 SING N N 55 A1AMF C H3 SING N N 56 A1AMF C H2 SING N N 57 A1AMF C H4 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMF SMILES ACDLabs 12.01 "CNC(=O)c1c[NH]c2ncnc(NC(c3ccc4CCCS(=O)(=O)c4c3)C(C)C)c12" A1AMF InChI InChI 1.06 "InChI=1S/C21H25N5O3S/c1-12(2)18(14-7-6-13-5-4-8-30(28,29)16(13)9-14)26-20-17-15(21(27)22-3)10-23-19(17)24-11-25-20/h6-7,9-12,18H,4-5,8H2,1-3H3,(H,22,27)(H2,23,24,25,26)/t18-/m0/s1" A1AMF InChIKey InChI 1.06 LMYQGHQMPJKOQI-SFHVURJKSA-N A1AMF SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1c[nH]c2ncnc(N[C@@H](C(C)C)c3ccc4CCC[S](=O)(=O)c4c3)c12" A1AMF SMILES CACTVS 3.385 "CNC(=O)c1c[nH]c2ncnc(N[CH](C(C)C)c3ccc4CCC[S](=O)(=O)c4c3)c12" A1AMF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC" A1AMF SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMF "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide" A1AMF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]amino]-~{N}-methyl-7~{H}-pyrrolo[2,3-d]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMF "Create component" 2024-04-11 RCSB A1AMF "Initial release" 2024-05-15 RCSB #