data_A1AWE # _chem_comp.id A1AWE _chem_comp.name "2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AWE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CGL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AWE C10 C1 C 0 1 N N R N N N 17.118 59.959 105.936 0.117 0.974 0.690 C10 A1AWE 1 A1AWE C11 C2 C 0 1 N N N N N N 17.251 58.686 106.776 0.358 0.799 2.191 C11 A1AWE 2 A1AWE C12 C3 C 0 1 Y N N N N N 16.364 61.050 106.689 -1.280 0.523 0.349 C12 A1AWE 3 A1AWE C18 C4 C 0 1 Y N N N N N 15.140 63.206 108.081 -3.845 -0.313 -0.276 C18 A1AWE 4 A1AWE C20 C5 C 0 1 N N N N N N 13.216 63.840 108.395 -5.618 0.845 -0.985 C20 A1AWE 5 A1AWE C13 C6 C 0 1 Y N N N N N 17.009 62.054 107.197 -1.547 -0.823 0.177 C13 A1AWE 6 A1AWE C17 C7 C 0 1 Y N N N N N 16.541 63.006 107.821 -2.827 -1.242 -0.135 C17 A1AWE 7 A1AWE C05 C8 C 0 1 N N N N N N 13.893 62.789 103.741 6.407 0.112 -0.751 C05 A1AWE 8 A1AWE C07 C9 C 0 1 N N N N N N 15.583 61.669 102.573 4.036 0.020 -0.534 C07 A1AWE 9 A1AWE C08 C10 C 0 1 N N N N N N 16.677 60.707 103.035 2.902 0.757 0.181 C08 A1AWE 10 A1AWE C22 C11 C 0 1 Y N N N N N 14.211 62.093 107.516 -3.577 1.041 -0.097 C22 A1AWE 11 A1AWE C23 C12 C 0 1 Y N N N N N 14.966 60.835 106.698 -2.292 1.454 0.215 C23 A1AWE 12 A1AWE N14 N1 N 1 1 N N N N N N 18.456 62.131 107.098 -0.461 -1.816 0.327 N14 A1AWE 13 A1AWE O06 O1 O 0 1 N N N N N N 15.270 62.604 103.579 5.304 0.643 -0.201 O06 A1AWE 14 A1AWE O15 O2 O 0 1 N N N N N N 19.258 61.842 108.221 -0.307 -2.683 -0.515 O15 A1AWE 15 A1AWE O16 O3 O -1 1 N N N N N N 18.958 62.467 106.087 0.280 -1.768 1.293 O16 A1AWE 16 A1AWE O19 O4 O 0 1 N N N N N N 14.339 63.961 108.597 -5.169 -0.461 -0.575 O19 A1AWE 17 A1AWE O21 O5 O 0 1 N N N N N N 12.743 62.668 107.997 -4.733 1.743 -0.284 O21 A1AWE 18 A1AWE O24 O6 O 0 1 N N N N N N 13.200 61.867 103.942 7.491 0.588 -0.510 O24 A1AWE 19 A1AWE S09 S1 S 0 1 N N N N N N 16.116 59.685 104.432 1.317 -0.022 -0.235 S09 A1AWE 20 A1AWE H1 H1 H 0 1 N N N N N N 18.106 60.318 105.611 0.234 2.025 0.424 H1 A1AWE 21 A1AWE H2 H2 H 0 1 N N N N N N 17.860 58.896 107.668 0.240 -0.251 2.457 H2 A1AWE 22 A1AWE H3 H3 H 0 1 N N N N N N 16.252 58.345 107.086 1.368 1.126 2.437 H3 A1AWE 23 A1AWE H4 H4 H 0 1 N N N N N N 17.737 57.901 106.178 -0.363 1.398 2.747 H4 A1AWE 24 A1AWE H5 H5 H 0 1 N N N N N N 12.951 64.572 107.617 -5.519 0.963 -2.064 H5 A1AWE 25 A1AWE H6 H6 H 0 1 N N N N N N 12.695 64.094 109.330 -6.651 1.009 -0.676 H6 A1AWE 26 A1AWE H7 H7 H 0 1 N N N N N N 17.232 63.744 108.201 -3.033 -2.294 -0.269 H7 A1AWE 27 A1AWE H8 H8 H 0 1 N Y N N N N 13.470 63.781 103.681 6.326 -0.741 -1.408 H8 A1AWE 28 A1AWE H9 H9 H 0 1 N N N N N N 15.932 62.207 101.679 4.049 -1.023 -0.216 H9 A1AWE 29 A1AWE H10 H10 H 0 1 N N N N N N 14.680 61.093 102.325 3.879 0.068 -1.612 H10 A1AWE 30 A1AWE H11 H11 H 0 1 N N N N N N 16.952 60.049 102.198 3.059 0.708 1.258 H11 A1AWE 31 A1AWE H12 H12 H 0 1 N N N N N N 17.557 61.289 103.348 2.889 1.799 -0.138 H12 A1AWE 32 A1AWE H13 H13 H 0 1 N N N N N N 14.462 59.992 106.248 -2.082 2.504 0.355 H13 A1AWE 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AWE C07 C08 SING N N 1 A1AWE C07 O06 SING N N 2 A1AWE C08 S09 SING N N 3 A1AWE O06 C05 SING N N 4 A1AWE C05 O24 DOUB N N 5 A1AWE S09 C10 SING N N 6 A1AWE C10 C12 SING N N 7 A1AWE C10 C11 SING N N 8 A1AWE O16 N14 SING N N 9 A1AWE C12 C23 DOUB Y N 10 A1AWE C12 C13 SING Y N 11 A1AWE C23 C22 SING Y N 12 A1AWE N14 C13 SING N N 13 A1AWE N14 O15 DOUB N N 14 A1AWE C13 C17 DOUB Y N 15 A1AWE C22 O21 SING N N 16 A1AWE C22 C18 DOUB Y N 17 A1AWE C17 C18 SING Y N 18 A1AWE O21 C20 SING N N 19 A1AWE C18 O19 SING N N 20 A1AWE C20 O19 SING N N 21 A1AWE C10 H1 SING N N 22 A1AWE C11 H2 SING N N 23 A1AWE C11 H3 SING N N 24 A1AWE C11 H4 SING N N 25 A1AWE C20 H5 SING N N 26 A1AWE C20 H6 SING N N 27 A1AWE C17 H7 SING N N 28 A1AWE C05 H8 SING N N 29 A1AWE C07 H9 SING N N 30 A1AWE C07 H10 SING N N 31 A1AWE C08 H11 SING N N 32 A1AWE C08 H12 SING N N 33 A1AWE C23 H13 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AWE SMILES ACDLabs 12.01 "CC(SCCOC=O)c1cc2OCOc2cc1[N+]([O-])=O" A1AWE InChI InChI 1.06 "InChI=1S/C12H13NO6S/c1-8(20-3-2-17-6-14)9-4-11-12(19-7-18-11)5-10(9)13(15)16/h4-6,8H,2-3,7H2,1H3/t8-/m1/s1" A1AWE InChIKey InChI 1.06 OAPSBASJSSKBSD-MRVPVSSYSA-N A1AWE SMILES_CANONICAL CACTVS 3.385 "C[C@@H](SCCOC=O)c1cc2OCOc2cc1[N+]([O-])=O" A1AWE SMILES CACTVS 3.385 "C[CH](SCCOC=O)c1cc2OCOc2cc1[N+]([O-])=O" A1AWE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1cc2c(cc1[N+](=O)[O-])OCO2)SCCOC=O" A1AWE SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cc2c(cc1[N+](=O)[O-])OCO2)SCCOC=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AWE "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate" A1AWE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(1~{R})-1-(6-nitro-1,3-benzodioxol-5-yl)ethyl]sulfanylethyl methanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AWE "Create component" 2024-07-01 RCSB A1AWE "Initial release" 2024-09-18 RCSB A1AWE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AWE _pdbx_chem_comp_pcm.modified_residue_id DPP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C05 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #