data_A1BEM # _chem_comp.id A1BEM _chem_comp.name "N-ethyl-2-(4-methylpiperazin-1-yl)pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}6-(4-methylpyridin-2-yl)-~{N}2-(2-morpholin-4-ylethyl)-3-nitro-pyridine-2,6-diamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-30 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RME _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BEM C1 C1 C 0 1 N N N N N N 0.982 49.579 65.747 4.883 2.519 0.085 C1 A1BEM 1 A1BEM N1 N1 N 0 1 N N N N N N 1.374 48.020 67.612 2.984 0.979 0.013 N1 A1BEM 2 A1BEM O1 O1 O 0 1 N N N N N N 1.861 45.755 67.555 0.829 1.481 -0.185 O1 A1BEM 3 A1BEM C2 C2 C 0 1 N N N N N N 1.000 48.134 66.211 3.362 2.394 -0.030 C2 A1BEM 4 A1BEM N2 N2 N 0 1 Y N N N N N 1.762 47.458 71.917 -0.384 -2.456 0.036 N2 A1BEM 5 A1BEM C3 C3 C 0 1 N N N N N N 1.774 46.817 68.168 1.686 0.626 -0.072 C3 A1BEM 6 A1BEM N3 N3 N 0 1 N N N N N N 0.111 48.144 70.328 -1.034 -0.207 -0.019 N3 A1BEM 7 A1BEM C4 C4 C 0 1 Y N N N N N 2.127 46.857 69.615 1.305 -0.798 -0.029 C4 A1BEM 8 A1BEM N4 N4 N 0 1 N N N N N N -2.426 49.351 69.924 -3.714 0.751 0.048 N4 A1BEM 9 A1BEM C5 C5 C 0 1 Y N N N N N 3.328 46.223 69.987 2.285 -1.797 -0.013 C5 A1BEM 10 A1BEM C6 C6 C 0 1 Y N N N N N 3.735 46.209 71.316 1.875 -3.118 0.028 C6 A1BEM 11 A1BEM C7 C7 C 0 1 Y N N N N N 2.923 46.837 72.236 0.524 -3.413 0.052 C7 A1BEM 12 A1BEM C8 C8 C 0 1 Y N N N N N 1.332 47.485 70.616 -0.048 -1.176 -0.003 C8 A1BEM 13 A1BEM C9 C9 C 0 1 N N N N N N -1.000 47.335 69.809 -1.919 -0.374 -1.179 C9 A1BEM 14 A1BEM C10 C10 C 0 1 N N N N N N -1.937 48.242 69.012 -2.944 0.762 -1.204 C10 A1BEM 15 A1BEM C11 C11 C 0 1 N N N N N N -1.291 50.155 70.525 -2.828 0.918 1.209 C11 A1BEM 16 A1BEM C12 C12 C 0 1 N N N N N N -0.305 49.231 71.235 -1.803 -0.218 1.233 C12 A1BEM 17 A1BEM C13 C13 C 0 1 N N N N N N -3.404 50.249 69.219 -4.761 1.781 0.032 C13 A1BEM 18 A1BEM H1 H1 H 0 1 N N N N N N 0.695 49.620 64.686 5.165 3.571 0.054 H1 A1BEM 19 A1BEM H2 H2 H 0 1 N N N N N N 0.255 50.147 66.346 5.213 2.082 1.028 H2 A1BEM 20 A1BEM H3 H3 H 0 1 N N N N N N 1.983 50.017 65.874 5.355 1.991 -0.744 H3 A1BEM 21 A1BEM H4 H4 H 0 1 N N N N N N 1.341 48.835 68.191 3.668 0.297 0.103 H4 A1BEM 22 A1BEM H5 H5 H 0 1 N N N N N N -0.003 47.704 66.074 2.891 2.921 0.799 H5 A1BEM 23 A1BEM H6 H6 H 0 1 N N N N N N 1.725 47.574 65.602 3.032 2.830 -0.973 H6 A1BEM 24 A1BEM H8 H8 H 0 1 N N N N N N 3.937 45.744 69.235 3.334 -1.544 -0.032 H8 A1BEM 25 A1BEM H9 H9 H 0 1 N N N N N N 4.652 45.725 71.616 2.606 -3.914 0.041 H9 A1BEM 26 A1BEM H10 H10 H 0 1 N N N N N N 3.230 46.834 73.271 0.206 -4.444 0.084 H10 A1BEM 27 A1BEM H11 H11 H 0 1 N N N N N N -1.549 46.880 70.646 -1.328 -0.350 -2.095 H11 A1BEM 28 A1BEM H12 H12 H 0 1 N N N N N N -0.607 46.543 69.155 -2.437 -1.331 -1.106 H12 A1BEM 29 A1BEM H13 H13 H 0 1 N N N N N N -1.396 48.676 68.158 -3.621 0.623 -2.047 H13 A1BEM 30 A1BEM H14 H14 H 0 1 N N N N N N -2.794 47.659 68.645 -2.428 1.716 -1.304 H14 A1BEM 31 A1BEM H15 H15 H 0 1 N N N N N N -0.767 50.698 69.724 -2.310 1.874 1.136 H15 A1BEM 32 A1BEM H16 H16 H 0 1 N N N N N N -1.700 50.875 71.249 -3.420 0.894 2.124 H16 A1BEM 33 A1BEM H17 H17 H 0 1 N N N N N N -0.787 48.799 72.125 -2.320 -1.172 1.334 H17 A1BEM 34 A1BEM H18 H18 H 0 1 N N N N N N 0.580 49.809 71.541 -1.127 -0.080 2.077 H18 A1BEM 35 A1BEM H19 H19 H 0 1 N N N N N N -3.738 51.040 69.907 -4.300 2.767 -0.020 H19 A1BEM 36 A1BEM H20 H20 H 0 1 N N N N N N -2.918 50.705 68.344 -5.402 1.633 -0.837 H20 A1BEM 37 A1BEM H21 H21 H 0 1 N N N N N N -4.272 49.659 68.890 -5.358 1.706 0.941 H21 A1BEM 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BEM C1 C2 SING N N 1 A1BEM C2 N1 SING N N 2 A1BEM O1 C3 DOUB N N 3 A1BEM N1 C3 SING N N 4 A1BEM C3 C4 SING N N 5 A1BEM C10 C9 SING N N 6 A1BEM C10 N4 SING N N 7 A1BEM C13 N4 SING N N 8 A1BEM C4 C5 DOUB Y N 9 A1BEM C4 C8 SING Y N 10 A1BEM C9 N3 SING N N 11 A1BEM N4 C11 SING N N 12 A1BEM C5 C6 SING Y N 13 A1BEM N3 C8 SING N N 14 A1BEM N3 C12 SING N N 15 A1BEM C11 C12 SING N N 16 A1BEM C8 N2 DOUB Y N 17 A1BEM C6 C7 DOUB Y N 18 A1BEM N2 C7 SING Y N 19 A1BEM C1 H1 SING N N 20 A1BEM C1 H2 SING N N 21 A1BEM C1 H3 SING N N 22 A1BEM N1 H4 SING N N 23 A1BEM C2 H5 SING N N 24 A1BEM C2 H6 SING N N 25 A1BEM C5 H8 SING N N 26 A1BEM C6 H9 SING N N 27 A1BEM C7 H10 SING N N 28 A1BEM C9 H11 SING N N 29 A1BEM C9 H12 SING N N 30 A1BEM C10 H13 SING N N 31 A1BEM C10 H14 SING N N 32 A1BEM C11 H15 SING N N 33 A1BEM C11 H16 SING N N 34 A1BEM C12 H17 SING N N 35 A1BEM C12 H18 SING N N 36 A1BEM C13 H19 SING N N 37 A1BEM C13 H20 SING N N 38 A1BEM C13 H21 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BEM SMILES ACDLabs 14.52 "CN1CCN(CC1)c1ncccc1C(=O)NCC" A1BEM InChI InChI 1.06 "InChI=1S/C13H20N4O/c1-3-14-13(18)11-5-4-6-15-12(11)17-9-7-16(2)8-10-17/h4-6H,3,7-10H2,1-2H3,(H,14,18)" A1BEM InChIKey InChI 1.06 KCRYVRIFQJRTDD-UHFFFAOYSA-N A1BEM SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)c1cccnc1N2CCN(C)CC2" A1BEM SMILES CACTVS 3.385 "CCNC(=O)c1cccnc1N2CCN(C)CC2" A1BEM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCNC(=O)c1cccnc1N2CCN(CC2)C" A1BEM SMILES "OpenEye OEToolkits" 3.1.0.0 "CCNC(=O)c1cccnc1N2CCN(CC2)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BEM "SYSTEMATIC NAME" ACDLabs 14.52 "N-ethyl-2-(4-methylpiperazin-1-yl)pyridine-3-carboxamide" A1BEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-ethyl-2-(4-methylpiperazin-1-yl)pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BEM "Create component" 2024-10-30 RCSB A1BEM "Initial release" 2024-11-06 RCSB #