data_A1D6U
#
_chem_comp.id A1D6U
_chem_comp.name "~{N},~{N}-dimethyl-7-propan-2-yl-3-thia-5-aza-1,6-diazonia-2$l^{3}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H17 Cu N4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 2
_chem_comp.pdbx_initial_date 2024-03-15
_chem_comp.pdbx_modified_date 2025-03-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 312.901
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1D6U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8YG7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1D6U CU01 CU1 CU 0 0 N N N N N N -21.190 -35.845 -48.902 -0.061 0.787 -0.003 CU01 A1D6U 1
A1D6U S003 S1 S 0 0 N N N N N N -22.729 -36.226 -50.148 1.576 1.706 0.091 S003 A1D6U 2
A1D6U N007 N1 N 1 0 N N N N N N -20.093 -36.212 -50.431 0.250 -0.818 -0.108 N007 A1D6U 3
A1D6U N008 N2 N 1 0 Y N N N N N -19.316 -35.585 -48.114 -1.565 1.094 -0.016 N008 A1D6U 4
A1D6U N00C N3 N 0 0 N N N N N N -20.557 -36.536 -51.624 1.522 -0.849 -0.081 N00C A1D6U 5
A1D6U N00E N4 N 0 0 N N N N N N -22.663 -36.970 -52.971 3.772 -0.062 0.025 N00E A1D6U 6
A1D6U C00F C1 C 0 0 N N N N N N -18.815 -36.113 -50.249 -0.989 -1.209 -0.163 C00F A1D6U 7
A1D6U C00G C2 C 0 0 Y N N N N N -18.337 -35.789 -49.022 -2.044 -0.177 -0.108 C00G A1D6U 8
A1D6U C00J C3 C 0 0 N N N N N N -21.930 -36.610 -51.741 2.412 0.117 0.007 C00J A1D6U 9
A1D6U C00L C4 C 0 0 Y N N N N N -19.046 -35.237 -46.818 -2.358 2.133 0.033 C00L A1D6U 10
A1D6U C00O C5 C 0 0 N N N N N N -17.912 -36.421 -51.508 -1.338 -2.671 -0.274 C00O A1D6U 11
A1D6U C00Q C6 C 0 0 Y N N N N N -17.738 -35.068 -46.370 -3.734 2.004 -0.005 C00Q A1D6U 12
A1D6U C00T C7 C 0 0 Y N N N N N -17.001 -35.629 -48.583 -3.437 -0.355 -0.151 C00T A1D6U 13
A1D6U C00U C8 C 0 0 N N N N N N -23.988 -36.403 -53.254 4.334 -1.412 -0.057 C00U A1D6U 14
A1D6U C00V C9 C 0 0 Y N N N N N -16.723 -35.265 -47.278 -4.282 0.731 -0.098 C00V A1D6U 15
A1D6U C00Y C10 C 0 0 N N N N N N -17.263 -37.808 -51.336 -0.055 -3.491 -0.428 C00Y A1D6U 16
A1D6U C00Z C11 C 0 0 N N N N N N -22.088 -37.934 -53.926 4.661 1.098 0.127 C00Z A1D6U 17
A1D6U C012 C12 C 0 0 N N N N N N -16.907 -35.310 -51.916 -2.079 -3.116 0.989 C012 A1D6U 18
A1D6U H2 H2 H 0 1 N N N N N N -19.864 -35.090 -46.128 -1.926 3.120 0.106 H2 A1D6U 19
A1D6U H3 H3 H 0 1 N N N N N N -18.610 -36.518 -52.353 -1.976 -2.828 -1.144 H3 A1D6U 20
A1D6U H4 H4 H 0 1 N N N N N N -17.528 -34.792 -45.347 -4.370 2.875 0.037 H4 A1D6U 21
A1D6U H5 H5 H 0 1 N N N N N N -16.189 -35.793 -49.276 -3.848 -1.350 -0.234 H5 A1D6U 22
A1D6U H6 H6 H 0 1 N N N N N N -24.269 -35.707 -52.450 4.497 -1.674 -1.103 H6 A1D6U 23
A1D6U H7 H7 H 0 1 N N N N N N -23.959 -35.863 -54.212 5.284 -1.443 0.477 H7 A1D6U 24
A1D6U H8 H8 H 0 1 N N N N N N -24.729 -37.214 -53.312 3.641 -2.122 0.392 H8 A1D6U 25
A1D6U H9 H9 H 0 1 N N N N N N -15.697 -35.134 -46.968 -5.353 0.595 -0.131 H9 A1D6U 26
A1D6U H10 H10 H 0 1 N N N N N N -18.032 -38.540 -51.048 0.583 -3.335 0.442 H10 A1D6U 27
A1D6U H11 H11 H 0 1 N N N N N N -16.800 -38.116 -52.285 -0.308 -4.549 -0.508 H11 A1D6U 28
A1D6U H12 H12 H 0 1 N N N N N N -16.493 -37.758 -50.552 0.472 -3.175 -1.327 H12 A1D6U 29
A1D6U H13 H13 H 0 1 N N N N N N -21.100 -38.260 -53.569 4.066 2.009 0.178 H13 A1D6U 30
A1D6U H14 H14 H 0 1 N N N N N N -22.753 -38.806 -54.011 5.270 1.010 1.028 H14 A1D6U 31
A1D6U H15 H15 H 0 1 N N N N N N -21.983 -37.456 -54.911 5.310 1.136 -0.748 H15 A1D6U 32
A1D6U H16 H16 H 0 1 N N N N N N -17.440 -34.353 -52.020 -1.441 -2.959 1.859 H16 A1D6U 33
A1D6U H17 H17 H 0 1 N N N N N N -16.131 -35.216 -51.142 -2.993 -2.532 1.099 H17 A1D6U 34
A1D6U H18 H18 H 0 1 N N N N N N -16.438 -35.574 -52.875 -2.331 -4.173 0.909 H18 A1D6U 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1D6U C00Z N00E SING N N 1
A1D6U C00U N00E SING N N 2
A1D6U N00E C00J SING N N 3
A1D6U C012 C00O SING N N 4
A1D6U C00J N00C DOUB N N 5
A1D6U C00J S003 SING N N 6
A1D6U N00C N007 SING N N 7
A1D6U C00O C00Y SING N N 8
A1D6U C00O C00F SING N N 9
A1D6U N007 C00F DOUB N N 10
A1D6U N007 CU01 SING N N 11
A1D6U C00F C00G SING N N 12
A1D6U S003 CU01 SING N N 13
A1D6U C00G C00T DOUB Y N 14
A1D6U C00G N008 SING Y N 15
A1D6U CU01 N008 SING N N 16
A1D6U C00T C00V SING Y N 17
A1D6U N008 C00L DOUB Y N 18
A1D6U C00V C00Q DOUB Y N 19
A1D6U C00L C00Q SING Y N 20
A1D6U C00L H2 SING N N 21
A1D6U C00O H3 SING N N 22
A1D6U C00Q H4 SING N N 23
A1D6U C00T H5 SING N N 24
A1D6U C00U H6 SING N N 25
A1D6U C00U H7 SING N N 26
A1D6U C00U H8 SING N N 27
A1D6U C00V H9 SING N N 28
A1D6U C00Y H10 SING N N 29
A1D6U C00Y H11 SING N N 30
A1D6U C00Y H12 SING N N 31
A1D6U C00Z H13 SING N N 32
A1D6U C00Z H14 SING N N 33
A1D6U C00Z H15 SING N N 34
A1D6U C012 H16 SING N N 35
A1D6U C012 H17 SING N N 36
A1D6U C012 H18 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1D6U InChI InChI 1.06 "InChI=1S/C12H18N4S.Cu/c1-9(2)11(10-7-5-6-8-13-10)14-15-12(17)16(3)4;/h5-9H,1-4H3,(H,15,17);/q;+3/p-1/b14-11+;"
A1D6U InChIKey InChI 1.06 MMVNHFWKDOBSNA-JHGYPSGKSA-M
A1D6U SMILES_CANONICAL CACTVS 3.385 "CC(C)C1=[N+]2N=C(S[Cu]2[n+]3ccccc13)N(C)C"
A1D6U SMILES CACTVS 3.385 "CC(C)C1=[N+]2N=C(S[Cu]2[n+]3ccccc13)N(C)C"
A1D6U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C1=[N+]2N=C(S[Cu]2[n+]3c1cccc3)N(C)C"
A1D6U SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1=[N+]2N=C(S[Cu]2[n+]3c1cccc3)N(C)C"
#
_pdbx_chem_comp_identifier.comp_id A1D6U
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N},~{N}-dimethyl-7-propan-2-yl-3-thia-5-aza-1,6-diazonia-2$l^{3}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1D6U "Create component" 2024-03-15 PDBC
A1D6U "Initial release" 2025-03-12 RCSB
#