data_A1P # _chem_comp.id A1P _chem_comp.name "9-{2-DEOXY-5-O-[HYDROXY(OXIDO)PHOSPHINO]-BETA-L-ERYTHRO-PENTOFURANOSYL}-9H-PURIN-2-AMINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-11-25 _chem_comp.pdbx_modified_date 2014-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 315.222 _chem_comp.one_letter_code N _chem_comp.three_letter_code A1P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2C7O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1P P P P 0 1 N N S -24.022 47.055 84.133 1.584 -0.526 -4.792 P A1P 1 A1P O1P O1P O 0 1 N N N -24.370 46.293 82.906 2.522 -0.605 -5.968 O1P A1P 2 A1P O2P O2P O 0 1 N N N -24.939 47.034 85.302 0.247 -1.418 -5.034 O2P A1P 3 A1P "O5'" O5* O 0 1 N N N -22.602 46.580 84.669 2.211 -1.232 -3.468 "O5'" A1P 4 A1P N9 N9 N 0 1 Y N N -20.869 47.397 87.906 1.818 1.923 -0.049 N9 A1P 5 A1P C4 C4 C 0 1 Y N N -20.337 48.060 88.992 1.885 2.954 0.847 C4 A1P 6 A1P N3 N3 N 0 1 Y N N -19.046 48.030 89.388 2.221 2.889 2.144 N3 A1P 7 A1P C2 C2 C 0 1 Y N N -18.842 48.754 90.478 2.173 4.115 2.707 C2 A1P 8 A1P N2 N2 N 0 1 N N N -17.606 48.841 90.993 2.510 4.172 4.079 N2 A1P 9 A1P N1 N1 N 0 1 Y N N -19.831 49.445 91.136 1.846 5.300 2.137 N1 A1P 10 A1P C6 C6 C 0 1 Y N N -21.167 49.493 90.746 1.516 5.292 0.823 C6 A1P 11 A1P C5 C5 C 0 1 Y N N -21.398 48.727 89.568 1.528 4.085 0.130 C5 A1P 12 A1P N7 N7 N 0 1 Y N N -22.565 48.510 88.848 1.249 3.765 -1.175 N7 A1P 13 A1P C8 C8 C 0 1 Y N N -22.204 47.716 87.875 1.432 2.463 -1.249 C8 A1P 14 A1P "C2'" C2* C 0 1 N N N -20.830 45.190 86.703 0.878 -0.312 0.578 "C2'" A1P 15 A1P "C5'" C5* C 0 1 N N N -21.441 46.637 83.844 1.348 -1.500 -2.377 "C5'" A1P 16 A1P "C4'" C4* C 0 1 N N R -20.226 46.236 84.647 2.156 -1.432 -1.088 "C4'" A1P 17 A1P "O4'" O4* O 0 1 N N N -20.068 47.182 85.732 2.678 -0.093 -0.958 "O4'" A1P 18 A1P "C1'" C1* C 0 1 N N R -20.148 46.521 86.983 2.101 0.516 0.211 "C1'" A1P 19 A1P "C3'" C3* C 0 1 N N S -20.332 44.859 85.305 1.309 -1.697 0.152 "C3'" A1P 20 A1P "O3'" O3* O 0 1 N N N -19.034 44.263 85.392 2.127 -2.250 1.180 "O3'" A1P 21 A1P H2P H2P H 0 1 N N N -24.716 47.521 86.087 0.346 -2.328 -5.388 H2P A1P 22 A1P H2N1 1H2N H 0 0 N N N -17.449 49.399 91.832 2.998 3.404 4.490 H2N1 A1P 23 A1P H2N2 2H2N H 0 0 N N N -16.872 48.328 90.505 2.171 4.932 4.630 H2N2 A1P 24 A1P H6 H6 H 0 1 N N N -21.949 50.055 91.283 1.256 6.243 0.376 H6 A1P 25 A1P H8 H8 H 0 1 N N N -22.901 47.340 87.107 1.302 1.859 -2.137 H8 A1P 26 A1P "H2'1" 1H2* H 0 0 N N N -21.939 45.197 86.818 0.008 0.008 -0.009 "H2'1" A1P 27 A1P "H2'2" 2H2* H 0 0 N N N -20.648 44.398 87.467 0.635 -0.225 1.641 "H2'2" A1P 28 A1P "H5'1" 1H5* H 0 0 N N N -21.316 47.635 83.363 0.551 -0.756 -2.359 "H5'1" A1P 29 A1P "H5'2" 2H5* H 0 0 N N N -21.553 46.026 82.918 0.917 -2.495 -2.497 "H5'2" A1P 30 A1P "H4'" H4* H 0 1 N N N -19.323 46.266 83.994 3.008 -2.117 -1.157 "H4'" A1P 31 A1P "H1'" H1* H 0 1 N N N -19.120 46.337 87.372 2.853 0.503 1.007 "H1'" A1P 32 A1P "H3'" H3* H 0 1 N N N -21.049 44.200 84.761 0.475 -2.383 -0.018 "H3'" A1P 33 A1P HA HA H 0 1 N N N -18.723 44.056 84.519 2.928 -1.706 1.218 HA A1P 34 A1P HP1 HP1 H 0 1 N Y N -24.089 48.389 83.652 1.082 0.702 -4.309 HP1 A1P 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1P P O1P DOUB N N 1 A1P P O2P SING N N 2 A1P P "O5'" SING N N 3 A1P O2P H2P SING N N 4 A1P "O5'" "C5'" SING N N 5 A1P N9 C4 SING Y N 6 A1P N9 C8 SING Y N 7 A1P N9 "C1'" SING N N 8 A1P C4 N3 DOUB Y N 9 A1P C4 C5 SING Y N 10 A1P N3 C2 SING Y N 11 A1P C2 N2 SING N N 12 A1P C2 N1 DOUB Y N 13 A1P N2 H2N1 SING N N 14 A1P N2 H2N2 SING N N 15 A1P N1 C6 SING Y N 16 A1P C6 C5 DOUB Y N 17 A1P C6 H6 SING N N 18 A1P C5 N7 SING Y N 19 A1P N7 C8 DOUB Y N 20 A1P C8 H8 SING N N 21 A1P "C2'" "C1'" SING N N 22 A1P "C2'" "C3'" SING N N 23 A1P "C2'" "H2'1" SING N N 24 A1P "C2'" "H2'2" SING N N 25 A1P "C5'" "C4'" SING N N 26 A1P "C5'" "H5'1" SING N N 27 A1P "C5'" "H5'2" SING N N 28 A1P "C4'" "O4'" SING N N 29 A1P "C4'" "C3'" SING N N 30 A1P "C4'" "H4'" SING N N 31 A1P "O4'" "C1'" SING N N 32 A1P "C1'" "H1'" SING N N 33 A1P "C3'" "O3'" SING N N 34 A1P "C3'" "H3'" SING N N 35 A1P "O3'" HA SING N N 36 A1P HP1 P SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1P SMILES ACDLabs 10.04 "O=P(O)OCC3OC(n2cnc1cnc(nc12)N)CC3O" A1P SMILES_CANONICAL CACTVS 3.341 "Nc1ncc2ncn([C@H]3C[C@H](O)[C@@H](CO[P@H](O)=O)O3)c2n1" A1P SMILES CACTVS 3.341 "Nc1ncc2ncn([CH]3C[CH](O)[CH](CO[PH](O)=O)O3)c2n1" A1P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(nc(n1)N)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@@H](=O)O)O" A1P SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(nc(n1)N)n(cn2)C3CC(C(O3)COP(=O)O)O" A1P InChI InChI 1.03 "InChI=1S/C10H14N5O5P/c11-10-12-2-5-9(14-10)15(4-13-5)8-1-6(16)7(20-8)3-19-21(17)18/h2,4,6-8,16,21H,1,3H2,(H,17,18)(H2,11,12,14)/t6-,7+,8+/m0/s1" A1P InChIKey InChI 1.03 XHZLYOLDUZBSPU-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1P "SYSTEMATIC NAME" ACDLabs 10.04 "9-{2-deoxy-5-O-[(S)-hydroxy(oxido)phosphanyl]-beta-D-erythro-pentofuranosyl}-9H-purin-2-amine" A1P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxyphosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1P "Create component" 2005-11-25 EBI A1P "Modify descriptor" 2011-06-04 RCSB A1P "Obsolete component" 2014-01-27 EBI #