data_A2R # _chem_comp.id A2R _chem_comp.name "[(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N5 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-05-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 639.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A2R OP3 OP3 O 0 1 N N N 14.631 30.053 24.165 7.316 -0.045 -0.705 OP3 A2R 1 A2R "P2'" P2* P 0 1 N N N 14.962 30.355 22.713 6.771 -1.485 -1.175 "P2'" A2R 2 A2R OP1 OP1 O 0 1 N N N 14.065 31.362 22.029 7.422 -1.867 -2.597 OP1 A2R 3 A2R OP2 OP2 O 0 1 N N N 15.220 29.134 21.844 7.146 -2.506 -0.171 OP2 A2R 4 A2R "O2'" O2* O 0 1 N N N 16.370 31.139 22.863 5.168 -1.433 -1.314 "O2'" A2R 5 A2R "C2'" C2* C 0 1 N N R 17.615 30.492 23.104 4.297 -1.222 -0.202 "C2'" A2R 6 A2R "C1'" C1* C 0 1 N N R 18.611 31.086 22.119 3.451 0.053 -0.410 "C1'" A2R 7 A2R N9 N9 N 0 1 Y N N 18.482 30.450 20.802 4.042 1.181 0.314 N9 A2R 8 A2R C4 C4 C 0 1 Y N N 18.333 31.167 19.678 5.042 2.003 -0.139 C4 A2R 9 A2R N3 N3 N 0 1 Y N N 18.329 32.521 19.443 5.760 2.080 -1.256 N3 A2R 10 A2R C2 C2 C 0 1 Y N N 18.167 32.977 18.190 6.679 3.011 -1.400 C2 A2R 11 A2R N1 N1 N 0 1 Y N N 18.020 32.135 17.153 6.935 3.905 -0.462 N1 A2R 12 A2R C6 C6 C 0 1 Y N N 18.016 30.771 17.353 6.269 3.907 0.688 C6 A2R 13 A2R N6 N6 N 0 1 N N N 17.856 29.921 16.315 6.544 4.848 1.664 N6 A2R 14 A2R C5 C5 C 0 1 Y N N 18.177 30.267 18.641 5.277 2.931 0.888 C5 A2R 15 A2R N7 N7 N 0 1 Y N N 18.213 29.015 19.178 4.424 2.634 1.898 N7 A2R 16 A2R C8 C8 C 0 1 Y N N 18.420 29.119 20.513 3.694 1.610 1.561 C8 A2R 17 A2R "O4'" O4* O 0 1 N N N 19.857 30.992 22.740 2.154 -0.271 0.135 "O4'" A2R 18 A2R "C3'" C3* C 0 1 N N R 18.208 30.854 24.450 3.250 -2.356 -0.112 "C3'" A2R 19 A2R "O3'" O3* O 0 1 N N N 17.561 32.005 25.030 3.444 -3.301 -1.166 "O3'" A2R 20 A2R "C4'" C4* C 0 1 N N R 19.664 31.193 24.129 1.896 -1.631 -0.276 "C4'" A2R 21 A2R "C5'" C5* C 0 1 N N N 20.612 30.269 24.868 0.837 -2.269 0.625 "C5'" A2R 22 A2R "O5'" O5* O 0 1 N N N 20.388 30.462 26.257 -0.416 -1.612 0.426 "O5'" A2R 23 A2R P P P 0 1 N N S 20.339 29.224 27.295 -1.758 -2.026 1.213 P A2R 24 A2R O1 O1 O 0 1 N N N 19.812 28.006 26.584 -1.507 -1.982 2.671 O1 A2R 25 A2R O2 O2 O 0 1 N N N 19.594 29.699 28.521 -2.192 -3.517 0.788 O2 A2R 26 A2R O3 O3 O 0 1 N N N 21.885 28.931 27.567 -2.938 -0.996 0.840 O3 A2R 27 A2R P1 P1 P 0 1 N N S 22.914 29.737 28.477 -4.332 -0.592 1.538 P1 A2R 28 A2R O11 O11 O 0 1 N N N 23.122 28.906 29.721 -4.051 0.449 2.733 O11 A2R 29 A2R O12 O12 O 0 1 N N N 22.582 31.206 28.458 -4.981 -1.805 2.083 O12 A2R 30 A2R "O15'" O15* O 0 0 N N N 24.261 29.569 27.593 -5.300 0.090 0.448 "O15'" A2R 31 A2R "C15'" C15* C 0 0 N N N 24.815 30.640 26.810 -6.649 0.465 0.731 "C15'" A2R 32 A2R "C14'" C14* C 0 0 N N R 26.004 30.114 25.990 -7.280 1.083 -0.518 "C14'" A2R 33 A2R "C13'" C13* C 0 0 N N S 25.569 29.146 24.893 -8.697 1.610 -0.201 "C13'" A2R 34 A2R "O13'" O13* O 0 0 N N N 26.503 29.218 23.782 -8.666 3.018 0.037 "O13'" A2R 35 A2R "C12'" C12* C 0 0 N N R 25.683 27.777 25.572 -9.510 1.294 -1.476 "C12'" A2R 36 A2R "O12'" O12* O 0 0 N N N 25.806 26.701 24.632 -10.005 2.498 -2.065 "O12'" A2R 37 A2R "C11'" C11* C 0 0 N N R 26.943 27.986 26.413 -8.488 0.614 -2.414 "C11'" A2R 38 A2R "O14'" O14* O 0 0 N N N 26.882 29.355 26.848 -7.481 0.073 -1.531 "O14'" A2R 39 A2R "O11'" O11* O 0 0 N N N 27.011 27.097 27.527 -9.115 -0.435 -3.156 "O11'" A2R 40 A2R HOP3 HOP3 H 0 0 N N N 15.435 29.990 24.667 7.106 0.674 -1.316 HOP3 A2R 41 A2R HOP1 HOP1 H 0 0 N N N 13.877 32.076 22.626 8.387 -1.916 -2.587 HOP1 A2R 42 A2R "H2'" H2* H 0 1 N N N 17.443 29.408 23.032 4.869 -1.154 0.723 "H2'" A2R 43 A2R "H1'" H1* H 0 1 N N N 18.432 32.146 21.886 3.370 0.286 -1.472 "H1'" A2R 44 A2R H2 H2 H 0 1 N N N 18.155 34.042 18.012 7.244 3.046 -2.319 H2 A2R 45 A2R HN61 1HN6 H 0 0 N N N 17.816 30.440 15.461 7.231 5.516 1.514 HN61 A2R 46 A2R HN62 2HN6 H 0 0 N N N 18.627 29.285 16.283 6.051 4.839 2.500 HN62 A2R 47 A2R H8 H8 H 0 1 N N N 18.517 28.303 21.214 2.928 1.165 2.178 H8 A2R 48 A2R "H3'" H3* H 0 1 N N N 18.091 30.038 25.178 3.304 -2.849 0.859 "H3'" A2R 49 A2R "HO3'" HO3* H 0 0 N N N 17.419 31.855 25.957 2.814 -4.034 -1.157 "HO3'" A2R 50 A2R "H4'" H4* H 0 1 N N N 19.867 32.231 24.431 1.576 -1.658 -1.318 "H4'" A2R 51 A2R "H5'1" 1H5* H 0 0 N N N 20.415 29.222 24.593 0.737 -3.325 0.376 "H5'1" A2R 52 A2R "H5'2" 2H5* H 0 0 N N N 21.657 30.493 24.607 1.139 -2.168 1.667 "H5'2" A2R 53 A2R HO2 HO2 H 0 1 N N N 20.203 29.799 29.243 -2.372 -3.620 -0.156 HO2 A2R 54 A2R HO11 HO11 H 0 0 N N N 23.166 27.987 29.485 -3.626 1.270 2.448 HO11 A2R 55 A2R "H5'3" 3H5* H 0 0 N N N 24.045 31.032 26.129 -7.217 -0.417 1.027 "H5'3" A2R 56 A2R "H5'4" 4H5* H 0 0 N N N 25.158 31.443 27.479 -6.661 1.194 1.542 "H5'4" A2R 57 A2R "H14'" H14* H 0 0 N N N 26.490 30.997 25.548 -6.653 1.888 -0.901 "H14'" A2R 58 A2R "H13'" H13* H 0 0 N N N 24.565 29.356 24.495 -9.115 1.087 0.660 "H13'" A2R 59 A2R "H16'" H16* H 0 0 N N N 26.021 29.234 22.963 -9.530 3.402 0.242 "H16'" A2R 60 A2R "H12'" H12* H 0 0 N N N 24.798 27.481 26.154 -10.332 0.616 -1.248 "H12'" A2R 61 A2R "H15'" H15* H 0 0 N N N 25.833 27.052 23.750 -10.523 2.359 -2.870 "H15'" A2R 62 A2R "H11'" H11* H 0 0 N N N 27.847 27.773 25.824 -8.047 1.346 -3.089 "H11'" A2R 63 A2R "H17'" H17* H 0 0 N N N 27.026 26.199 27.216 -8.520 -0.898 -3.761 "H17'" A2R 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2R OP3 "P2'" SING N N 1 A2R OP3 HOP3 SING N N 2 A2R "P2'" OP2 DOUB N N 3 A2R "P2'" OP1 SING N N 4 A2R "P2'" "O2'" SING N N 5 A2R OP1 HOP1 SING N N 6 A2R "O2'" "C2'" SING N N 7 A2R "C2'" "C1'" SING N N 8 A2R "C2'" "C3'" SING N N 9 A2R "C2'" "H2'" SING N N 10 A2R "C1'" N9 SING N N 11 A2R "C1'" "O4'" SING N N 12 A2R "C1'" "H1'" SING N N 13 A2R N9 C4 SING Y N 14 A2R N9 C8 SING Y N 15 A2R C4 C5 DOUB Y N 16 A2R C4 N3 SING Y N 17 A2R N3 C2 DOUB Y N 18 A2R C2 N1 SING Y N 19 A2R C2 H2 SING N N 20 A2R N1 C6 DOUB Y N 21 A2R C6 N6 SING N N 22 A2R C6 C5 SING Y N 23 A2R N6 HN61 SING N N 24 A2R N6 HN62 SING N N 25 A2R C5 N7 SING Y N 26 A2R N7 C8 DOUB Y N 27 A2R C8 H8 SING N N 28 A2R "O4'" "C4'" SING N N 29 A2R "C3'" "C4'" SING N N 30 A2R "C3'" "O3'" SING N N 31 A2R "C3'" "H3'" SING N N 32 A2R "O3'" "HO3'" SING N N 33 A2R "C4'" "C5'" SING N N 34 A2R "C4'" "H4'" SING N N 35 A2R "C5'" "O5'" SING N N 36 A2R "C5'" "H5'1" SING N N 37 A2R "C5'" "H5'2" SING N N 38 A2R "O5'" P SING N N 39 A2R P O1 DOUB N N 40 A2R P O3 SING N N 41 A2R P O2 SING N N 42 A2R O2 HO2 SING N N 43 A2R O3 P1 SING N N 44 A2R P1 "O15'" SING N N 45 A2R P1 O12 DOUB N N 46 A2R P1 O11 SING N N 47 A2R O11 HO11 SING N N 48 A2R "O15'" "C15'" SING N N 49 A2R "C15'" "C14'" SING N N 50 A2R "C15'" "H5'3" SING N N 51 A2R "C15'" "H5'4" SING N N 52 A2R "C14'" "C13'" SING N N 53 A2R "C14'" "O14'" SING N N 54 A2R "C14'" "H14'" SING N N 55 A2R "C13'" "O13'" SING N N 56 A2R "C13'" "C12'" SING N N 57 A2R "C13'" "H13'" SING N N 58 A2R "O13'" "H16'" SING N N 59 A2R "C12'" "O12'" SING N N 60 A2R "C12'" "C11'" SING N N 61 A2R "C12'" "H12'" SING N N 62 A2R "O12'" "H15'" SING N N 63 A2R "C11'" "O14'" SING N N 64 A2R "C11'" "O11'" SING N N 65 A2R "C11'" "H11'" SING N N 66 A2R "O11'" "H17'" SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A2R SMILES ACDLabs 10.04 "O=P(O)(O)OC3C(O)C(OC3n1c2ncnc(N)c2nc1)COP(=O)(O)OP(=O)(O)OCC4OC(O)C(O)C4O" A2R SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]4O[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O[P](O)(O)=O" A2R SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O[P](O)(O)=O" A2R SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)O)O)O)O)OP(=O)(O)O)N" A2R SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)OP(=O)(O)O)N" A2R InChI InChI 1.03 "InChI=1S/C15H24N5O17P3/c16-12-7-13(18-3-17-12)20(4-19-7)14-11(36-38(25,26)27)9(22)6(34-14)2-33-40(30,31)37-39(28,29)32-1-5-8(21)10(23)15(24)35-5/h3-6,8-11,14-15,21-24H,1-2H2,(H,28,29)(H,30,31)(H2,16,17,18)(H2,25,26,27)/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1" A2R InChIKey InChI 1.03 ICNHOLCERMYLRZ-KEOHHSTQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2R "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2R,3S,4R,5R)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" A2R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A2R "Create component" 2007-05-24 RCSB A2R "Modify descriptor" 2011-06-04 RCSB #