data_A3S # _chem_comp.id A3S _chem_comp.name "SERINE-3'-AMINOADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N'-L-SERYL-3'-AMINO-(3'-DEOXY)-ADENOSINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-06-24 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 353.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A3S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TKY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A3S "O5'" "O5'" O 0 1 N N N 13.784 12.887 43.539 1.900 -3.657 -1.249 "O5'" A3S 1 A3S "C5'" "C5'" C 0 1 N N N 14.145 12.035 42.455 1.987 -2.739 -0.158 "C5'" A3S 2 A3S "C4'" "C4'" C 0 1 N N S 15.118 10.977 42.924 1.261 -1.442 -0.522 "C4'" A3S 3 A3S "O4'" "O4'" O 0 1 N N N 16.321 11.628 43.420 -0.159 -1.681 -0.657 "O4'" A3S 4 A3S "C1'" "C1'" C 0 1 N N R 16.542 11.258 44.767 -0.781 -0.387 -0.504 "C1'" A3S 5 A3S N9 N9 N 0 1 Y N N 17.046 12.427 45.486 -2.191 -0.536 -0.133 N9 A3S 6 A3S C4 C4 C 0 1 Y N N 18.133 12.463 46.326 -3.173 0.411 -0.277 C4 A3S 7 A3S N3 N3 N 0 1 Y N N 18.950 11.446 46.647 -3.219 1.650 -0.755 N3 A3S 8 A3S C2 C2 C 0 1 Y N N 19.893 11.850 47.497 -4.350 2.323 -0.765 C2 A3S 9 A3S N1 N1 N 0 1 Y N N 20.096 13.066 48.024 -5.482 1.814 -0.315 N1 A3S 10 A3S C6 C6 C 0 1 Y N N 19.255 14.067 47.681 -5.535 0.581 0.177 C6 A3S 11 A3S N6 N6 N 0 1 N N N 19.452 15.277 48.209 -6.726 0.056 0.647 N6 A3S 12 A3S C5 C5 C 0 1 Y N N 18.214 13.767 46.783 -4.353 -0.178 0.209 C5 A3S 13 A3S N7 N7 N 0 1 Y N N 17.200 14.542 46.235 -4.034 -1.427 0.624 N7 A3S 14 A3S C8 C8 C 0 1 Y N N 16.539 13.704 45.474 -2.765 -1.640 0.425 C8 A3S 15 A3S "C2'" "C2'" C 0 1 N N R 15.196 10.770 45.297 0.005 0.297 0.636 "C2'" A3S 16 A3S "O2'" "O2'" O 0 1 N N N 15.386 9.880 46.380 0.160 1.694 0.373 "O2'" A3S 17 A3S "C3'" "C3'" C 0 1 N N S 14.616 10.092 44.061 1.378 -0.411 0.622 "C3'" A3S 18 A3S N8 N8 N 0 1 N N N 15.140 8.769 44.021 2.449 0.548 0.341 N8 A3S 19 A3S N N N 0 1 N N N 16.067 6.257 44.132 5.949 1.012 1.334 N A3S 20 A3S CA CA C 0 1 N N S 15.373 6.557 42.884 4.813 1.268 0.438 CA A3S 21 A3S CB CB C 0 1 N N N 14.294 5.502 42.624 5.266 1.116 -1.015 CB A3S 22 A3S OG OG O 0 1 N N N 13.540 5.246 43.796 6.227 2.127 -1.324 OG A3S 23 A3S C C C 0 1 N N N 14.751 7.950 42.925 3.712 0.281 0.727 C A3S 24 A3S O O O 0 1 N N N 13.968 8.321 42.049 3.963 -0.754 1.308 O A3S 25 A3S "H5'" "H5'" H 0 1 N N N 13.173 13.552 43.244 2.369 -4.458 -0.979 "H5'" A3S 26 A3S "H5'1" "1H5'" H 0 0 N N N 14.543 12.611 41.587 3.034 -2.522 0.052 "H5'1" A3S 27 A3S "H5'2" "2H5'" H 0 0 N N N 13.251 11.589 41.960 1.523 -3.179 0.725 "H5'2" A3S 28 A3S "H4'" "H4'" H 0 1 N N N 15.285 10.327 42.034 1.665 -1.029 -1.446 "H4'" A3S 29 A3S "H1'" "H1'" H 0 1 N N N 17.299 10.449 44.891 -0.691 0.188 -1.426 "H1'" A3S 30 A3S H2 H2 H 0 1 N N N 20.606 11.068 47.808 -4.352 3.330 -1.157 H2 A3S 31 A3S HN61 1HN6 H 0 0 N N N 20.410 15.570 48.017 -6.752 -0.846 1.004 HN61 A3S 32 A3S HN62 2HN6 H 0 0 N N N 18.817 16.032 47.950 -7.536 0.590 0.619 HN62 A3S 33 A3S H8 H8 H 0 1 N N N 15.661 14.034 44.893 -2.245 -2.555 0.665 H8 A3S 34 A3S "H2'" "H2'" H 0 1 N N N 14.529 11.562 45.709 -0.495 0.143 1.592 "H2'" A3S 35 A3S H1 H1 H 0 1 N N N 14.548 9.576 46.710 -0.725 2.082 0.394 H1 A3S 36 A3S "H3'" "H3'" H 0 1 N N N 13.506 9.994 44.022 1.558 -0.915 1.573 "H3'" A3S 37 A3S HN8 HN8 H 0 1 N N N 15.768 8.423 44.747 2.248 1.376 -0.123 HN8 A3S 38 A3S HN1 1HN H 0 1 N N N 16.446 5.310 44.142 5.584 1.020 2.275 HN1 A3S 39 A3S HN2 2HN H 0 1 N N N 16.786 6.960 44.305 6.255 0.068 1.151 HN2 A3S 40 A3S HA HA H 0 1 N N N 16.116 6.536 42.053 4.445 2.281 0.599 HA A3S 41 A3S HB1 1HB H 0 1 N N N 14.728 4.566 42.202 5.716 0.133 -1.155 HB1 A3S 42 A3S HB2 2HB H 0 1 N N N 13.639 5.787 41.768 4.406 1.218 -1.677 HB2 A3S 43 A3S HOG HOG H 0 1 N N N 12.871 4.592 43.635 6.486 1.996 -2.246 HOG A3S 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A3S "O5'" "C5'" SING N N 1 A3S "O5'" "H5'" SING N N 2 A3S "C5'" "C4'" SING N N 3 A3S "C5'" "H5'1" SING N N 4 A3S "C5'" "H5'2" SING N N 5 A3S "C4'" "O4'" SING N N 6 A3S "C4'" "C3'" SING N N 7 A3S "C4'" "H4'" SING N N 8 A3S "O4'" "C1'" SING N N 9 A3S "C1'" N9 SING N N 10 A3S "C1'" "C2'" SING N N 11 A3S "C1'" "H1'" SING N N 12 A3S N9 C4 SING Y N 13 A3S N9 C8 SING Y N 14 A3S C4 N3 SING Y N 15 A3S C4 C5 DOUB Y N 16 A3S N3 C2 DOUB Y N 17 A3S C2 N1 SING Y N 18 A3S C2 H2 SING N N 19 A3S N1 C6 DOUB Y N 20 A3S C6 N6 SING N N 21 A3S C6 C5 SING Y N 22 A3S N6 HN61 SING N N 23 A3S N6 HN62 SING N N 24 A3S C5 N7 SING Y N 25 A3S N7 C8 DOUB Y N 26 A3S C8 H8 SING N N 27 A3S "C2'" "O2'" SING N N 28 A3S "C2'" "C3'" SING N N 29 A3S "C2'" "H2'" SING N N 30 A3S "O2'" H1 SING N N 31 A3S "C3'" N8 SING N N 32 A3S "C3'" "H3'" SING N N 33 A3S N8 C SING N N 34 A3S N8 HN8 SING N N 35 A3S N CA SING N N 36 A3S N HN1 SING N N 37 A3S N HN2 SING N N 38 A3S CA CB SING N N 39 A3S CA C SING N N 40 A3S CA HA SING N N 41 A3S CB OG SING N N 42 A3S CB HB1 SING N N 43 A3S CB HB2 SING N N 44 A3S OG HOG SING N N 45 A3S C O DOUB N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A3S SMILES ACDLabs 10.04 "O=C(NC3C(OC(n2cnc1c(ncnc12)N)C3O)CO)C(N)CO" A3S SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CO)C(=O)N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO)n2cnc3c(N)ncnc23" A3S SMILES CACTVS 3.341 "N[CH](CO)C(=O)N[CH]1[CH](O)[CH](O[CH]1CO)n2cnc3c(N)ncnc23" A3S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)NC(=O)[C@H](CO)N)O)N" A3S SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)NC(=O)C(CO)N)O)N" A3S InChI InChI 1.03 "InChI=1S/C13H19N7O5/c14-5(1-21)12(24)19-7-6(2-22)25-13(9(7)23)20-4-18-8-10(15)16-3-17-11(8)20/h3-7,9,13,21-23H,1-2,14H2,(H,19,24)(H2,15,16,17)/t5-,6+,7+,9+,13+/m0/s1" A3S InChIKey InChI 1.03 ITDKSTILAWHDJI-AYEBZEFBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A3S "SYSTEMATIC NAME" ACDLabs 10.04 "3'-deoxy-3'-(L-serylamino)adenosine" A3S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-N-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]-3-hydroxy-propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A3S "Create component" 2004-06-24 RCSB A3S "Modify descriptor" 2011-06-04 RCSB A3S "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A3S _pdbx_chem_comp_synonyms.name "N'-L-SERYL-3'-AMINO-(3'-DEOXY)-ADENOSINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##