data_A7R # _chem_comp.id A7R _chem_comp.name "[[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N5 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2018-10-12 _chem_comp.pdbx_modified_date 2019-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 640.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A7R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6IH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A7R C01 C1 C 0 1 N N S 18.858 40.250 10.754 -6.261 0.724 2.187 C01 A7R 1 A7R C02 C2 C 0 1 N N R 19.588 41.328 11.545 -6.937 -0.582 1.715 C02 A7R 2 A7R C03 C3 C 0 1 N N S 17.966 39.805 11.664 -4.776 0.538 1.806 C03 A7R 3 A7R C04 C4 C 0 1 N N S 18.568 41.564 12.769 -5.780 -1.404 1.104 C04 A7R 4 A7R C05 C5 C 0 1 N N S 13.148 35.864 15.611 4.993 0.586 -2.771 C05 A7R 5 A7R C06 C6 C 0 1 N N R 12.062 35.250 15.646 6.054 -0.357 -2.161 C06 A7R 6 A7R C07 C7 C 0 1 N N S 14.261 34.759 15.803 3.786 0.461 -1.815 C07 A7R 7 A7R C08 C8 C 0 1 N N S 12.291 33.886 16.557 5.362 -0.940 -0.909 C08 A7R 8 A7R C09 C9 C 0 1 N N N 16.953 38.977 10.986 -4.178 1.863 1.331 C09 A7R 9 A7R C10 C10 C 0 1 N N N 14.727 34.276 14.552 3.093 1.816 -1.652 C10 A7R 10 A7R C11 C11 C 0 1 Y N N 10.399 32.393 16.660 6.918 -2.253 0.359 C11 A7R 11 A7R C12 C12 C 0 1 Y N N 12.003 32.040 15.044 6.578 -0.056 0.963 C12 A7R 12 A7R C13 C13 C 0 1 Y N N 9.648 31.289 16.239 7.847 -2.430 1.386 C13 A7R 13 A7R C14 C14 C 0 1 Y N N 11.323 30.930 14.551 7.482 -0.151 2.006 C14 A7R 14 A7R C15 C15 C 0 1 Y N N 10.132 30.553 15.168 8.135 -1.350 2.229 C15 A7R 15 A7R C16 C16 C 0 1 N N N 8.324 30.871 16.912 8.515 -3.734 1.579 C16 A7R 16 A7R C17 C17 C 0 1 N N N 19.320 42.601 14.760 -5.666 -1.910 -1.288 C17 A7R 17 A7R C18 C18 C 0 1 N N N 17.854 43.851 13.502 -7.238 -3.038 0.045 C18 A7R 18 A7R C19 C19 C 0 1 N N N 19.386 43.623 15.704 -6.103 -2.596 -2.370 C19 A7R 19 A7R C20 C20 C 0 1 N N N 18.625 44.758 15.453 -7.151 -3.526 -2.212 C20 A7R 20 A7R N01 N1 N 1 1 Y N N 11.537 32.743 16.063 6.327 -1.090 0.183 N01 A7R 21 A7R N02 N2 N 0 1 N N N 7.415 31.863 17.473 9.410 -3.892 2.575 N02 A7R 22 A7R N03 N3 N 0 1 N N N 18.577 42.740 13.663 -6.244 -2.139 -0.075 N03 A7R 23 A7R N04 N4 N 0 1 N N N 18.622 45.884 16.371 -7.615 -4.237 -3.294 N04 A7R 24 A7R N05 N5 N 0 1 N N N 17.886 44.839 14.366 -7.687 -3.713 -1.012 N05 A7R 25 A7R O01 O1 O 0 1 N N N 17.397 41.144 12.339 -4.790 -0.423 0.727 O01 A7R 26 A7R O02 O2 O 0 1 N N N 13.589 33.664 16.627 4.353 0.032 -0.558 O02 A7R 27 A7R O03 O3 O 0 1 N N N 18.145 40.755 9.553 -6.816 1.850 1.504 O03 A7R 28 A7R O04 O4 O 0 1 N N N 19.943 42.351 10.730 -7.930 -0.304 0.725 O04 A7R 29 A7R O05 O5 O 0 1 N N N 13.291 36.483 14.248 5.474 1.931 -2.797 O05 A7R 30 A7R O06 O6 O 0 1 N N N 11.666 34.921 14.268 7.223 0.377 -1.791 O06 A7R 31 A7R O07 O7 O 0 1 N N N 16.795 37.800 11.732 -2.778 1.697 1.094 O07 A7R 32 A7R O08 O8 O 0 1 N N N 14.069 34.896 13.428 1.915 1.656 -0.859 O08 A7R 33 A7R O09 O9 O 0 1 N N N 16.378 35.405 12.363 -0.350 2.317 0.301 O09 A7R 34 A7R O10 O10 O 0 1 N N N 17.225 35.745 9.939 -2.380 3.464 -0.664 O10 A7R 35 A7R O11 O11 O 0 1 N N N 18.763 36.098 11.854 -1.751 4.036 1.713 O11 A7R 36 A7R O12 O12 O 0 1 N N N 14.139 35.720 10.953 0.500 3.559 -1.725 O12 A7R 37 A7R O13 O13 O 0 1 N N N 15.001 33.434 11.468 1.723 3.927 0.452 O13 A7R 38 A7R O14 O14 O 0 1 N N N 8.021 29.718 16.984 8.257 -4.665 0.841 O14 A7R 39 A7R O15 O15 O 0 1 N N N 17.162 44.022 12.563 -7.744 -3.231 1.138 O15 A7R 40 A7R P01 P1 P 0 1 N N N 17.347 36.268 11.354 -1.827 2.891 0.584 P01 A7R 41 A7R P02 P2 P 0 1 N N N 14.858 34.854 11.970 0.938 2.880 -0.485 P02 A7R 42 A7R H1 H1 H 0 1 N N N 19.572 39.466 10.462 -6.367 0.841 3.266 H1 A7R 43 A7R H2 H2 H 0 1 N N N 20.490 40.867 11.975 -7.377 -1.112 2.560 H2 A7R 44 A7R H3 H3 H 0 1 N N N 18.457 39.213 12.451 -4.213 0.148 2.653 H3 A7R 45 A7R H4 H4 H 0 1 N N N 18.883 40.763 13.454 -5.372 -2.093 1.844 H4 A7R 46 A7R H5 H5 H 0 1 N N N 13.264 36.632 16.390 4.721 0.257 -3.774 H5 A7R 47 A7R H6 H6 H 0 1 N N N 11.259 35.828 16.127 6.307 -1.152 -2.863 H6 A7R 48 A7R H7 H7 H 0 1 N N N 15.088 35.193 16.384 3.082 -0.283 -2.188 H7 A7R 49 A7R H8 H8 H 0 1 N N N 11.905 34.133 17.557 4.900 -1.899 -1.143 H8 A7R 50 A7R H9 H9 H 0 1 N N N 15.998 39.520 10.936 -4.668 2.173 0.408 H9 A7R 51 A7R H10 H10 H 0 1 N N N 17.289 38.733 9.968 -4.329 2.625 2.096 H10 A7R 52 A7R H11 H11 H 0 1 N N N 14.550 33.191 14.507 3.771 2.513 -1.159 H11 A7R 53 A7R H12 H12 H 0 1 N N N 15.806 34.475 14.480 2.822 2.206 -2.633 H12 A7R 54 A7R H13 H13 H 0 1 N N N 10.044 32.979 17.495 6.686 -3.077 -0.300 H13 A7R 55 A7R H14 H14 H 0 1 N N N 12.934 32.335 14.583 6.070 0.880 0.784 H14 A7R 56 A7R H15 H15 H 0 1 N N N 11.710 30.374 13.710 7.679 0.703 2.637 H15 A7R 57 A7R H16 H16 H 0 1 N N N 9.588 29.690 14.813 8.848 -1.451 3.034 H16 A7R 58 A7R H17 H17 H 0 1 N N N 19.876 41.689 14.919 -4.865 -1.192 -1.383 H17 A7R 59 A7R H18 H18 H 0 1 N N N 19.999 43.537 16.589 -5.657 -2.433 -3.340 H18 A7R 60 A7R H19 H19 H 0 1 N N N 6.562 31.571 17.905 9.616 -3.149 3.164 H19 A7R 61 A7R H20 H20 H 0 1 N N N 7.645 32.835 17.426 9.848 -4.748 2.702 H20 A7R 62 A7R H21 H21 H 0 1 N N N 18.069 46.692 16.169 -7.220 -4.099 -4.170 H21 A7R 63 A7R H22 H22 H 0 1 N N N 19.173 45.851 17.205 -8.335 -4.877 -3.182 H22 A7R 64 A7R H23 H23 H 0 1 N N N 17.715 40.032 9.112 -7.762 1.978 1.660 H23 A7R 65 A7R H24 H24 H 0 1 N N N 20.397 43.016 11.235 -8.651 0.260 1.039 H24 A7R 66 A7R H25 H25 H 0 1 N N N 14.113 36.957 14.199 6.268 2.055 -3.334 H25 A7R 67 A7R H26 H26 H 0 1 N N N 10.840 34.453 14.279 7.663 0.814 -2.533 H26 A7R 68 A7R H27 H27 H 0 1 N N N 19.293 35.695 11.176 -1.396 3.731 2.559 H27 A7R 69 A7R H28 H28 H 0 1 N N N 14.609 33.361 10.606 2.040 3.550 1.284 H28 A7R 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A7R O03 C01 SING N N 1 A7R O10 P01 DOUB N N 2 A7R O04 C02 SING N N 3 A7R C01 C02 SING N N 4 A7R C01 C03 SING N N 5 A7R O12 P02 DOUB N N 6 A7R C09 C03 SING N N 7 A7R C09 O07 SING N N 8 A7R P01 O07 SING N N 9 A7R P01 O11 SING N N 10 A7R P01 O09 SING N N 11 A7R O13 P02 SING N N 12 A7R C02 C04 SING N N 13 A7R C03 O01 SING N N 14 A7R P02 O09 SING N N 15 A7R P02 O08 SING N N 16 A7R O01 C04 SING N N 17 A7R O15 C18 DOUB N N 18 A7R C04 N03 SING N N 19 A7R O08 C10 SING N N 20 A7R C18 N03 SING N N 21 A7R C18 N05 SING N N 22 A7R N03 C17 SING N N 23 A7R O05 C05 SING N N 24 A7R O06 C06 SING N N 25 A7R N05 C20 DOUB N N 26 A7R C14 C12 DOUB Y N 27 A7R C14 C15 SING Y N 28 A7R C10 C07 SING N N 29 A7R C17 C19 DOUB N N 30 A7R C12 N01 SING Y N 31 A7R C15 C13 DOUB Y N 32 A7R C20 C19 SING N N 33 A7R C20 N04 SING N N 34 A7R C05 C06 SING N N 35 A7R C05 C07 SING N N 36 A7R C06 C08 SING N N 37 A7R C07 O02 SING N N 38 A7R N01 C08 SING N N 39 A7R N01 C11 DOUB Y N 40 A7R C13 C11 SING Y N 41 A7R C13 C16 SING N N 42 A7R C08 O02 SING N N 43 A7R C16 O14 DOUB N N 44 A7R C16 N02 SING N N 45 A7R C01 H1 SING N N 46 A7R C02 H2 SING N N 47 A7R C03 H3 SING N N 48 A7R C04 H4 SING N N 49 A7R C05 H5 SING N N 50 A7R C06 H6 SING N N 51 A7R C07 H7 SING N N 52 A7R C08 H8 SING N N 53 A7R C09 H9 SING N N 54 A7R C09 H10 SING N N 55 A7R C10 H11 SING N N 56 A7R C10 H12 SING N N 57 A7R C11 H13 SING N N 58 A7R C12 H14 SING N N 59 A7R C14 H15 SING N N 60 A7R C15 H16 SING N N 61 A7R C17 H17 SING N N 62 A7R C19 H18 SING N N 63 A7R N02 H19 SING N N 64 A7R N02 H20 SING N N 65 A7R N04 H21 SING N N 66 A7R N04 H22 SING N N 67 A7R O03 H23 SING N N 68 A7R O04 H24 SING N N 69 A7R O05 H25 SING N N 70 A7R O06 H26 SING N N 71 A7R O11 H27 SING N N 72 A7R O13 H28 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A7R InChI InChI 1.03 "InChI=1S/C20H27N5O15P2/c21-12-3-5-25(20(31)23-12)19-16(29)14(27)11(39-19)8-37-42(34,35)40-41(32,33)36-7-10-13(26)15(28)18(38-10)24-4-1-2-9(6-24)17(22)30/h1-6,10-11,13-16,18-19,26-29H,7-8H2,(H5-,21,22,23,30,31,32,33,34,35)/p+1/t10-,11-,13+,14+,15+,16+,18-,19-/m0/s1" A7R InChIKey InChI 1.03 CRWNYXSXULHVKY-JKHXZYGESA-O A7R SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc[n+](c1)[C@H]2O[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@@H]([C@H](O)[C@@H]3O)N4C=CC(=NC4=O)N)[C@@H](O)[C@H]2O" A7R SMILES CACTVS 3.385 "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=NC4=O)N)[CH](O)[CH]2O" A7R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(c[n+](c1)[C@@H]2[C@@H]([C@@H]([C@@H](O2)COP(=O)(O)OP(=O)(O)OC[C@H]3[C@H]([C@H]([C@H](O3)N4C=CC(=NC4=O)N)O)O)O)O)C(=O)N" A7R SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=NC4=O)N)O)O)O)O)C(=O)N" # _pdbx_chem_comp_identifier.comp_id A7R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[[(2~{S},3~{S},4~{R},5~{S})-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{R},5~{S})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A7R "Create component" 2018-10-12 PDBJ A7R "Initial release" 2019-03-13 RCSB ##