data_A9F # _chem_comp.id A9F _chem_comp.name "N-{[3-({[(1R,2S)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H45 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-10-24 _chem_comp.pdbx_modified_date 2019-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 571.753 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A9F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6IJS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A9F CAV C1 C 0 1 N N N 21.173 21.444 8.262 -7.833 1.612 1.721 CAV A9F 1 A9F CAT C2 C 0 1 N N N 21.055 21.394 9.763 -8.697 2.276 0.646 CAT A9F 2 A9F NBN N1 N 0 1 N N N 22.165 20.579 10.281 -7.852 3.133 -0.198 NBN A9F 3 A9F CAA C3 C 0 1 N N N 21.930 20.190 11.690 -8.659 3.847 -1.196 CAA A9F 4 A9F CAU C4 C 0 1 N N N 23.412 21.349 10.137 -6.790 2.349 -0.842 CAU A9F 5 A9F CAW C5 C 0 1 N N N 23.652 21.823 8.706 -5.926 1.685 0.233 CAW A9F 6 A9F NBO N2 N 0 1 N N N 22.481 21.925 7.770 -6.771 0.828 1.077 NBO A9F 7 A9F CAZ C6 C 0 1 N N N 22.858 21.221 6.515 -5.964 0.113 2.075 CAZ A9F 8 A9F CBH C7 C 0 1 Y N N 21.893 21.246 5.348 -5.052 -0.863 1.378 CBH A9F 9 A9F CAM C8 C 0 1 Y N N 21.203 22.382 5.025 -3.788 -0.463 0.982 CAM A9F 10 A9F CAO C9 C 0 1 Y N N 20.329 22.391 3.950 -2.948 -1.352 0.345 CAO A9F 11 A9F CAL C10 C 0 1 Y N N 21.697 20.127 4.560 -5.480 -2.158 1.143 CAL A9F 12 A9F CAN C11 C 0 1 Y N N 20.819 20.138 3.479 -4.649 -3.057 0.506 CAN A9F 13 A9F CBJ C12 C 0 1 Y N N 20.126 21.281 3.154 -3.375 -2.658 0.099 CBJ A9F 14 A9F CBE C13 C 0 1 N N N 19.141 21.462 2.038 -2.480 -3.616 -0.584 CBE A9F 15 A9F OAF O1 O 0 1 N N N 18.816 22.609 1.763 -2.853 -4.754 -0.792 OAF A9F 16 A9F NBB N3 N 0 1 N N N 18.609 20.557 1.257 -1.250 -3.227 -0.976 NBB A9F 17 A9F CAX C14 C 0 1 N N N 18.987 19.197 0.942 -0.363 -4.177 -1.652 CAX A9F 18 A9F CBG C15 C 0 1 Y N N 19.651 19.175 -0.441 0.941 -3.498 -1.982 CBG A9F 19 A9F CAP C16 C 0 1 Y N N 19.661 20.314 -1.255 1.984 -3.526 -1.075 CAP A9F 20 A9F CAJ C17 C 0 1 Y N N 20.287 18.038 -0.887 1.097 -2.852 -3.195 CAJ A9F 21 A9F CAI C18 C 0 1 Y N N 20.921 18.004 -2.119 2.293 -2.230 -3.498 CAI A9F 22 A9F CAK C19 C 0 1 Y N N 20.929 19.117 -2.920 3.334 -2.253 -2.588 CAK A9F 23 A9F CBI C20 C 0 1 Y N N 20.299 20.282 -2.483 3.180 -2.903 -1.378 CBI A9F 24 A9F CAY C21 C 0 1 N N N 20.271 21.509 -3.374 4.315 -2.928 -0.387 CAY A9F 25 A9F OBD O2 O 0 1 N N N 21.599 21.933 -3.736 4.216 -1.796 0.480 OBD A9F 26 A9F CBM C22 C 0 1 N N R 21.549 23.005 -4.688 5.250 -1.725 1.463 CBM A9F 27 A9F CAS C23 C 0 1 N N N 22.827 23.256 -5.485 4.789 -2.409 2.766 CAS A9F 28 A9F CAQ C24 C 0 1 N N N 22.734 24.688 -5.967 5.393 -1.533 3.891 CAQ A9F 29 A9F CAR C25 C 0 1 N N N 21.670 25.333 -5.103 5.246 -0.099 3.323 CAR A9F 30 A9F CBL C26 C 0 1 N N S 21.314 24.329 -4.027 5.541 -0.256 1.817 CBL A9F 31 A9F NBC N4 N 0 1 N N N 22.147 24.452 -2.858 4.670 0.629 1.040 NBC A9F 32 A9F CBF C27 C 0 1 N N N 21.716 24.111 -1.630 5.050 1.897 0.788 CBF A9F 33 A9F OAG O3 O 0 1 N N N 20.624 23.612 -1.407 6.116 2.306 1.206 OAG A9F 34 A9F CBK C28 C 0 1 N N N 22.606 24.406 -0.450 4.172 2.790 0.004 CBK A9F 35 A9F CAH C29 C 0 1 N N N 23.711 25.324 -0.742 2.917 2.308 -0.488 CAH A9F 36 A9F NAE N5 N 0 1 N N N 24.646 26.004 -0.770 1.921 1.925 -0.879 NAE A9F 37 A9F CBA C30 C 0 1 N N N 23.249 23.139 0.119 4.552 4.057 -0.248 CBA A9F 38 A9F CBP C31 C 0 1 N N N 23.755 23.365 1.572 3.723 4.925 -1.159 CBP A9F 39 A9F CAC C32 C 0 1 N N N 22.677 24.051 2.409 3.568 4.237 -2.516 CAC A9F 40 A9F CAD C33 C 0 1 N N N 25.025 24.222 1.701 2.343 5.145 -0.537 CAD A9F 41 A9F CAB C34 C 0 1 N N N 24.007 21.977 2.179 4.418 6.275 -1.348 CAB A9F 42 A9F H1 H1 H 0 1 N N N 20.392 22.116 7.877 -7.386 2.380 2.353 H1 A9F 43 A9F H2 H2 H 0 1 N N N 21.009 20.429 7.870 -8.453 0.954 2.330 H2 A9F 44 A9F H3 H3 H 0 1 N N N 21.115 22.412 10.176 -9.166 1.508 0.031 H3 A9F 45 A9F H4 H4 H 0 1 N N N 20.094 20.939 10.047 -9.468 2.882 1.122 H4 A9F 46 A9F H6 H6 H 0 1 N N N 22.774 19.583 12.049 -9.394 4.472 -0.689 H6 A9F 47 A9F H7 H7 H 0 1 N N N 21.839 21.094 12.310 -8.009 4.474 -1.807 H7 A9F 48 A9F H8 H8 H 0 1 N N N 21.002 19.604 11.758 -9.171 3.126 -1.833 H8 A9F 49 A9F H9 H9 H 0 1 N N N 24.255 20.712 10.443 -7.237 1.581 -1.474 H9 A9F 50 A9F H10 H10 H 0 1 N N N 23.360 22.229 10.795 -6.171 3.007 -1.452 H10 A9F 51 A9F H11 H11 H 0 1 N N N 24.370 21.125 8.251 -5.155 1.079 -0.243 H11 A9F 52 A9F H12 H12 H 0 1 N N N 24.104 22.824 8.769 -5.457 2.453 0.848 H12 A9F 53 A9F H14 H14 H 0 1 N N N 23.025 20.165 6.774 -5.367 0.830 2.640 H14 A9F 54 A9F H15 H15 H 0 1 N N N 23.801 21.666 6.165 -6.623 -0.426 2.755 H15 A9F 55 A9F H16 H16 H 0 1 N N N 21.340 23.278 5.612 -3.459 0.548 1.172 H16 A9F 56 A9F H17 H17 H 0 1 N N N 19.787 23.298 3.727 -1.962 -1.038 0.035 H17 A9F 57 A9F H18 H18 H 0 1 N N N 22.239 19.221 4.789 -6.465 -2.465 1.459 H18 A9F 58 A9F H19 H19 H 0 1 N N N 20.681 19.242 2.891 -4.984 -4.067 0.324 H19 A9F 59 A9F H20 H20 H 0 1 N N N 17.782 20.865 0.787 -0.953 -2.319 -0.809 H20 A9F 60 A9F H21 H21 H 0 1 N N N 18.092 18.558 0.932 -0.175 -5.028 -0.998 H21 A9F 61 A9F H22 H22 H 0 1 N N N 19.695 18.826 1.698 -0.835 -4.523 -2.572 H22 A9F 62 A9F H23 H23 H 0 1 N N N 19.171 21.218 -0.925 1.863 -4.034 -0.130 H23 A9F 63 A9F H24 H24 H 0 1 N N N 20.292 17.155 -0.265 0.284 -2.834 -3.905 H24 A9F 64 A9F H25 H25 H 0 1 N N N 21.410 17.099 -2.449 2.415 -1.726 -4.445 H25 A9F 65 A9F H26 H26 H 0 1 N N N 21.419 19.092 -3.882 4.269 -1.767 -2.825 H26 A9F 66 A9F H27 H27 H 0 1 N N N 19.769 22.328 -2.838 4.261 -3.843 0.203 H27 A9F 67 A9F H28 H28 H 0 1 N N N 19.710 21.272 -4.290 5.265 -2.895 -0.921 H28 A9F 68 A9F H29 H29 H 0 1 N N N 20.732 22.821 -5.401 6.155 -2.205 1.089 H29 A9F 69 A9F H30 H30 H 0 1 N N N 22.888 22.567 -6.340 3.700 -2.414 2.830 H30 A9F 70 A9F H31 H31 H 0 1 N N N 23.711 23.124 -4.844 5.177 -3.426 2.822 H31 A9F 71 A9F H32 H32 H 0 1 N N N 23.698 25.201 -5.838 4.825 -1.643 4.814 H32 A9F 72 A9F H33 H33 H 0 1 N N N 22.441 24.719 -7.027 6.443 -1.778 4.050 H33 A9F 73 A9F H34 H34 H 0 1 N N N 22.060 26.255 -4.647 4.231 0.269 3.476 H34 A9F 74 A9F H35 H35 H 0 1 N N N 20.783 25.570 -5.708 5.970 0.571 3.786 H35 A9F 75 A9F H36 H36 H 0 1 N N N 20.252 24.432 -3.761 6.587 -0.023 1.615 H36 A9F 76 A9F H37 H37 H 0 1 N N N 23.078 24.803 -2.963 3.820 0.302 0.706 H37 A9F 77 A9F H39 H39 H 0 1 N N N 23.340 22.207 -0.420 5.451 4.451 0.203 H39 A9F 78 A9F H41 H41 H 0 1 N N N 23.049 24.204 3.433 3.072 3.276 -2.382 H41 A9F 79 A9F H42 H42 H 0 1 N N N 22.428 25.024 1.960 2.968 4.865 -3.175 H42 A9F 80 A9F H43 H43 H 0 1 N N N 21.777 23.419 2.437 4.551 4.081 -2.959 H43 A9F 81 A9F H44 H44 H 0 1 N N N 25.296 24.320 2.763 2.447 5.712 0.388 H44 A9F 82 A9F H45 H45 H 0 1 N N N 25.849 23.740 1.155 1.714 5.700 -1.234 H45 A9F 83 A9F H46 H46 H 0 1 N N N 24.839 25.220 1.277 1.883 4.181 -0.322 H46 A9F 84 A9F H47 H47 H 0 1 N N N 24.368 22.088 3.212 5.402 6.119 -1.791 H47 A9F 85 A9F H48 H48 H 0 1 N N N 23.070 21.401 2.178 3.819 6.903 -2.007 H48 A9F 86 A9F H49 H49 H 0 1 N N N 24.763 21.447 1.581 4.529 6.766 -0.381 H49 A9F 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A9F CAQ CAS SING N N 1 A9F CAQ CAR SING N N 2 A9F CAS CBM SING N N 3 A9F CAR CBL SING N N 4 A9F CBM CBL SING N N 5 A9F CBM OBD SING N N 6 A9F CBL NBC SING N N 7 A9F OBD CAY SING N N 8 A9F CAY CBI SING N N 9 A9F CAK CBI DOUB Y N 10 A9F CAK CAI SING Y N 11 A9F NBC CBF SING N N 12 A9F CBI CAP SING Y N 13 A9F CAI CAJ DOUB Y N 14 A9F CBF OAG DOUB N N 15 A9F CBF CBK SING N N 16 A9F CAP CBG DOUB Y N 17 A9F CAJ CBG SING Y N 18 A9F NAE CAH TRIP N N 19 A9F CAH CBK SING N N 20 A9F CBK CBA DOUB N E 21 A9F CBG CAX SING N N 22 A9F CBA CBP SING N N 23 A9F CAX NBB SING N N 24 A9F NBB CBE SING N N 25 A9F CBP CAD SING N N 26 A9F CBP CAB SING N N 27 A9F CBP CAC SING N N 28 A9F OAF CBE DOUB N N 29 A9F CBE CBJ SING N N 30 A9F CBJ CAN DOUB Y N 31 A9F CBJ CAO SING Y N 32 A9F CAN CAL SING Y N 33 A9F CAO CAM DOUB Y N 34 A9F CAL CBH DOUB Y N 35 A9F CAM CBH SING Y N 36 A9F CBH CAZ SING N N 37 A9F CAZ NBO SING N N 38 A9F NBO CAV SING N N 39 A9F NBO CAW SING N N 40 A9F CAV CAT SING N N 41 A9F CAW CAU SING N N 42 A9F CAT NBN SING N N 43 A9F CAU NBN SING N N 44 A9F NBN CAA SING N N 45 A9F CAV H1 SING N N 46 A9F CAV H2 SING N N 47 A9F CAT H3 SING N N 48 A9F CAT H4 SING N N 49 A9F CAA H6 SING N N 50 A9F CAA H7 SING N N 51 A9F CAA H8 SING N N 52 A9F CAU H9 SING N N 53 A9F CAU H10 SING N N 54 A9F CAW H11 SING N N 55 A9F CAW H12 SING N N 56 A9F CAZ H14 SING N N 57 A9F CAZ H15 SING N N 58 A9F CAM H16 SING N N 59 A9F CAO H17 SING N N 60 A9F CAL H18 SING N N 61 A9F CAN H19 SING N N 62 A9F NBB H20 SING N N 63 A9F CAX H21 SING N N 64 A9F CAX H22 SING N N 65 A9F CAP H23 SING N N 66 A9F CAJ H24 SING N N 67 A9F CAI H25 SING N N 68 A9F CAK H26 SING N N 69 A9F CAY H27 SING N N 70 A9F CAY H28 SING N N 71 A9F CBM H29 SING N N 72 A9F CAS H30 SING N N 73 A9F CAS H31 SING N N 74 A9F CAQ H32 SING N N 75 A9F CAQ H33 SING N N 76 A9F CAR H34 SING N N 77 A9F CAR H35 SING N N 78 A9F CBL H36 SING N N 79 A9F NBC H37 SING N N 80 A9F CBA H39 SING N N 81 A9F CAC H41 SING N N 82 A9F CAC H42 SING N N 83 A9F CAC H43 SING N N 84 A9F CAD H44 SING N N 85 A9F CAD H45 SING N N 86 A9F CAD H46 SING N N 87 A9F CAB H47 SING N N 88 A9F CAB H48 SING N N 89 A9F CAB H49 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A9F SMILES ACDLabs 12.01 "C1CN(C)CCN1Cc2ccc(cc2)C(=O)NCc3cc(ccc3)COC4C(CCC4)NC(=O)\C(=C\C(C)(C)C)C#N" A9F InChI InChI 1.03 "InChI=1S/C34H45N5O3/c1-34(2,3)20-29(21-35)33(41)37-30-9-6-10-31(30)42-24-27-8-5-7-26(19-27)22-36-32(40)28-13-11-25(12-14-28)23-39-17-15-38(4)16-18-39/h5,7-8,11-14,19-20,30-31H,6,9-10,15-18,22-24H2,1-4H3,(H,36,40)(H,37,41)/t30-,31+/m0/s1" A9F InChIKey InChI 1.03 BUZJOXNDWIIWSG-IOWSJCHKSA-N A9F SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[C@@H]4CCC[C@@H]4NC(=O)\C(=C\C(C)(C)C)C#N)c3" A9F SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[CH]4CCC[CH]4NC(=O)C(=CC(C)(C)C)C#N)c3" A9F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C)/C=C(\C#N)/C(=O)N[C@H]1CCC[C@H]1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C" A9F SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)(C)C=C(C#N)C(=O)NC1CCCC1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A9F "SYSTEMATIC NAME" ACDLabs 12.01 "N-{[3-({[(1R,2S)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide" A9F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[[3-[[(1~{R},2~{S})-2-[[(~{E})-2-cyano-4,4-dimethyl-pent-2-enoyl]amino]cyclopentyl]oxymethyl]phenyl]methyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A9F "Create component" 2018-10-24 PDBJ A9F "Initial release" 2019-10-16 RCSB ##