data_AXP # _chem_comp.id AXP _chem_comp.name "(1S)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H20 N O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-ACETAMIDO-2,4-DIDEXOY-D-GLYCERO-BETA-D-GALACTO-OCTOPYRANOSYLPHOSPHONIC ACID (AN AXIAL PHOSPHONATE)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.241 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AXP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DIL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AXP _pdbx_chem_comp_synonyms.name "4-ACETAMIDO-2,4-DIDEXOY-D-GLYCERO-BETA-D-GALACTO-OCTOPYRANOSYLPHOSPHONIC ACID (AN AXIAL PHOSPHONATE)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AXP P1 P1 P 0 1 N N N 43.289 52.356 45.755 -0.701 -0.087 -3.197 P1 AXP 1 AXP C2 C2 C 0 1 N N S 42.860 51.715 47.395 -0.428 -0.223 -1.400 C2 AXP 2 AXP C3 C3 C 0 1 N N N 41.545 51.035 47.666 0.679 -1.243 -1.128 C3 AXP 3 AXP C4 C4 C 0 1 N N S 41.408 50.423 49.099 0.878 -1.373 0.385 C4 AXP 4 AXP C5 C5 C 0 1 N N R 42.535 50.909 50.004 1.120 0.022 0.970 C5 AXP 5 AXP C6 C6 C 0 1 N N R 43.877 50.554 49.374 -0.020 0.948 0.542 C6 AXP 6 AXP C7 C7 C 0 1 N N R 45.137 51.000 50.148 -1.350 0.377 1.037 C7 AXP 7 AXP C8 C8 C 0 1 N N R 46.390 50.801 49.266 -1.394 0.439 2.565 C8 AXP 8 AXP C9 C9 C 0 1 N N N 47.644 51.190 50.039 -2.783 0.022 3.053 C9 AXP 9 AXP C10 C10 C 0 1 N N N 42.817 50.740 52.406 3.531 0.318 1.153 C10 AXP 10 AXP C11 C11 C 0 1 N N N 42.555 49.895 53.647 4.840 0.860 0.640 C11 AXP 11 AXP N5 N5 N 0 1 N N N 42.369 50.240 51.258 2.392 0.549 0.471 N5 AXP 12 AXP O1P O1P O 0 1 N N N 44.581 51.931 45.269 -1.101 -1.406 -3.736 O1P AXP 13 AXP O2P O2P O 0 1 N N N 42.112 52.189 44.818 0.659 0.393 -3.912 O2P AXP 14 AXP O3P O3P O 0 1 N N N 43.639 53.857 46.141 -1.866 0.985 -3.484 O3P AXP 15 AXP O4 O4 O 0 1 N N N 40.181 50.779 49.679 -0.288 -1.946 0.978 O4 AXP 16 AXP O6 O6 O 0 1 N N N 43.974 51.151 48.059 -0.049 1.050 -0.882 O6 AXP 17 AXP O7 O7 O 0 1 N N N 45.007 52.359 50.518 -2.429 1.144 0.498 O7 AXP 18 AXP O8 O8 O 0 1 N N N 46.482 49.443 48.863 -0.414 -0.447 3.107 O8 AXP 19 AXP O9 O9 O 0 1 N N N 47.840 50.259 51.081 -2.825 0.081 4.480 O9 AXP 20 AXP O10 O10 O 0 1 N N N 43.416 51.813 52.477 3.503 -0.325 2.180 O10 AXP 21 AXP H2 H2 H 0 1 N N N 42.569 52.672 47.887 -1.349 -0.551 -0.917 H2 AXP 22 AXP H32 H31 H 0 1 N N N 40.699 51.732 47.460 1.607 -0.906 -1.591 H32 AXP 23 AXP H31 H32 H 0 1 N N N 41.345 50.257 46.892 0.394 -2.210 -1.543 H31 AXP 24 AXP H4 H4 H 0 1 N N N 41.463 49.314 48.994 1.741 -2.008 0.587 H4 AXP 25 AXP H5 H5 H 0 1 N N N 42.507 52.014 50.145 1.151 -0.038 2.057 H5 AXP 26 AXP H6 H6 H 0 1 N N N 43.874 49.439 49.367 0.131 1.937 0.973 H6 AXP 27 AXP H7 H7 H 0 1 N N N 45.247 50.382 51.069 -1.444 -0.659 0.713 H7 AXP 28 AXP H8 H8 H 0 1 N N N 46.302 51.451 48.364 -1.185 1.457 2.894 H8 AXP 29 AXP H92 H91 H 0 1 N N N 48.538 51.287 49.380 -3.532 0.699 2.640 H92 AXP 30 AXP H91 H92 H 0 1 N N N 47.608 52.241 50.407 -2.993 -0.995 2.725 H91 AXP 31 AXP H111 H111 H 0 0 N N N 42.930 50.314 54.609 5.643 0.574 1.319 H111 AXP 32 AXP H113 H112 H 0 0 N N N 41.465 49.671 53.730 5.039 0.452 -0.350 H113 AXP 33 AXP H112 H113 H 0 0 N N N 42.959 48.866 53.497 4.785 1.947 0.580 H112 AXP 34 AXP HN5 HN5 H 0 1 N N N 41.896 49.339 51.339 2.415 1.065 -0.350 HN5 AXP 35 AXP HOP2 HOP2 H 0 0 N N N 42.336 52.525 43.958 0.884 1.253 -3.533 HOP2 AXP 36 AXP HOP3 HOP3 H 0 0 N N N 43.863 54.193 45.281 -1.978 1.026 -4.443 HOP3 AXP 37 AXP HO4 HO4 H 0 1 N Y N 40.097 50.407 50.549 -0.401 -2.821 0.582 HO4 AXP 38 AXP HO7 HO7 H 0 1 N Y N 45.782 52.633 50.994 -2.266 2.065 0.742 HO7 AXP 39 AXP HO8 HO8 H 0 1 N Y N 47.252 49.320 48.320 -0.715 -1.346 2.918 HO8 AXP 40 AXP HO9 HO9 H 0 1 N Y N 48.621 50.501 51.563 -3.715 -0.188 4.745 HO9 AXP 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AXP P1 C2 SING N N 1 AXP P1 O1P DOUB N N 2 AXP P1 O2P SING N N 3 AXP P1 O3P SING N N 4 AXP C2 C3 SING N N 5 AXP C2 O6 SING N N 6 AXP C2 H2 SING N N 7 AXP C3 C4 SING N N 8 AXP C3 H32 SING N N 9 AXP C3 H31 SING N N 10 AXP C4 C5 SING N N 11 AXP C4 O4 SING N N 12 AXP C4 H4 SING N N 13 AXP C5 C6 SING N N 14 AXP C5 N5 SING N N 15 AXP C5 H5 SING N N 16 AXP C6 C7 SING N N 17 AXP C6 O6 SING N N 18 AXP C6 H6 SING N N 19 AXP C7 C8 SING N N 20 AXP C7 O7 SING N N 21 AXP C7 H7 SING N N 22 AXP C8 C9 SING N N 23 AXP C8 O8 SING N N 24 AXP C8 H8 SING N N 25 AXP C9 O9 SING N N 26 AXP C9 H92 SING N N 27 AXP C9 H91 SING N N 28 AXP C10 C11 SING N N 29 AXP C10 N5 SING N N 30 AXP C10 O10 DOUB N N 31 AXP C11 H111 SING N N 32 AXP C11 H113 SING N N 33 AXP C11 H112 SING N N 34 AXP N5 HN5 SING N N 35 AXP O2P HOP2 SING N N 36 AXP O3P HOP3 SING N N 37 AXP O4 HO4 SING N N 38 AXP O7 HO7 SING N N 39 AXP O8 HO8 SING N N 40 AXP O9 HO9 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AXP SMILES ACDLabs 10.04 "O=P(O)(O)C1OC(C(NC(=O)C)C(O)C1)C(O)C(O)CO" AXP SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H]1[C@@H](O)C[C@@H](O[C@H]1[C@H](O)[C@H](O)CO)[P](O)(O)=O" AXP SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)C[CH](O[CH]1[CH](O)[CH](O)CO)[P](O)(O)=O" AXP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H](C[C@@H](O[C@H]1[C@@H]([C@@H](CO)O)O)P(=O)(O)O)O" AXP SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)P(=O)(O)O)O" AXP InChI InChI 1.03 "InChI=1S/C10H20NO9P/c1-4(13)11-8-5(14)2-7(21(17,18)19)20-10(8)9(16)6(15)3-12/h5-10,12,14-16H,2-3H2,1H3,(H,11,13)(H2,17,18,19)/t5-,6+,7-,8+,9+,10+/m0/s1" AXP InChIKey InChI 1.03 QITAGYVZDNZULE-HDBWYCHPSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AXP "SYSTEMATIC NAME" ACDLabs 10.04 "(1S)-4-(acetylamino)-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol" AXP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,4S,5R,6R)-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]phosphonic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support AXP "CARBOHYDRATE ISOMER" D PDB ? AXP "CARBOHYDRATE RING" pyranose PDB ? AXP "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AXP "Create component" 1999-07-08 RCSB AXP "Modify descriptor" 2011-06-04 RCSB AXP "Other modification" 2020-07-03 RCSB AXP "Modify name" 2020-07-17 RCSB AXP "Modify synonyms" 2020-07-17 RCSB AXP "Modify linking type" 2020-07-17 RCSB AXP "Modify atom id" 2020-07-17 RCSB AXP "Modify component atom id" 2020-07-17 RCSB AXP "Modify leaving atom flag" 2020-07-17 RCSB ##