data_B6A # _chem_comp.id B6A _chem_comp.name "[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-12-22 _chem_comp.pdbx_modified_date 2012-03-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B6A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3UPX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B6A CAM CAM C 0 1 N N N 28.637 14.551 28.356 -2.684 2.548 0.521 CAM B6A 1 B6A CAK CAK C 0 1 N N N 28.729 15.552 27.211 -3.261 3.356 -0.643 CAK B6A 2 B6A NAQ NAQ N 0 1 N N N 29.482 16.725 27.674 -4.506 2.730 -1.106 NAQ B6A 3 B6A CAL CAL C 0 1 N N N 28.710 17.442 28.685 -4.265 1.369 -1.601 CAL B6A 4 B6A CAN CAN C 0 1 N N N 28.585 16.545 29.912 -3.718 0.502 -0.465 CAN B6A 5 B6A CAX CAX C 0 1 N N N 27.946 15.190 29.553 -2.415 1.114 0.056 CAX B6A 6 B6A CAO CAO C 0 1 N N N 28.085 14.264 30.749 -1.895 0.285 1.232 CAO B6A 7 B6A NAY NAY N 0 1 Y N N 27.263 13.048 30.640 -1.525 -1.052 0.762 NAY B6A 8 B6A CAW CAW C 0 1 Y N N 25.949 12.967 30.782 -0.281 -1.446 0.292 CAW B6A 9 B6A CAJ CAJ C 0 1 Y N N 24.964 13.907 31.049 0.924 -0.797 0.116 CAJ B6A 10 B6A CAU CAU C 0 1 Y N N 27.740 11.847 30.390 -2.338 -2.147 0.708 CAU B6A 11 B6A NAA NAA N 0 1 N N N 29.027 11.587 30.185 -3.659 -2.171 1.095 NAA B6A 12 B6A NAP NAP N 0 1 Y N N 26.741 10.961 30.368 -1.673 -3.173 0.233 NAP B6A 13 B6A CAV CAV C 0 1 Y N N 25.613 11.629 30.611 -0.404 -2.809 -0.043 CAV B6A 14 B6A CAI CAI C 0 1 Y N N 24.285 11.229 30.720 0.701 -3.499 -0.557 CAI B6A 15 B6A CAH CAH C 0 1 Y N N 23.292 12.171 30.991 1.888 -2.855 -0.731 CAH B6A 16 B6A CAT CAT C 0 1 Y N N 23.638 13.508 31.158 2.019 -1.500 -0.394 CAT B6A 17 B6A CAR CAR C 0 1 N N N 22.593 14.562 31.440 3.309 -0.815 -0.585 CAR B6A 18 B6A OAB OAB O 0 1 N N N 22.773 15.715 31.043 4.221 -1.383 -1.156 OAB B6A 19 B6A CAS CAS C 0 1 Y N N 21.338 14.200 32.224 3.496 0.562 -0.083 CAS B6A 20 B6A CAF CAF C 0 1 Y N N 20.112 14.737 31.853 2.867 0.971 1.095 CAF B6A 21 B6A CAD CAD C 0 1 Y N N 18.963 14.404 32.565 3.046 2.257 1.558 CAD B6A 22 B6A CAC CAC C 0 1 Y N N 19.063 13.549 33.664 3.847 3.143 0.858 CAC B6A 23 B6A CAE CAE C 0 1 Y N N 20.293 13.019 34.029 4.473 2.745 -0.310 CAE B6A 24 B6A CAG CAG C 0 1 Y N N 21.430 13.344 33.314 4.307 1.459 -0.781 CAG B6A 25 B6A H1 H1 H 0 1 N N N 28.060 13.674 28.028 -1.752 3.004 0.854 H1 B6A 26 B6A H2 H2 H 0 1 N N N 29.650 14.235 28.646 -3.398 2.536 1.345 H2 B6A 27 B6A H3 H3 H 0 1 N N N 27.718 15.858 26.904 -3.467 4.374 -0.312 H3 B6A 28 B6A H4 H4 H 0 1 N N N 29.248 15.092 26.357 -2.541 3.380 -1.461 H4 B6A 29 B6A H5 H5 H 0 1 N N N 30.351 16.427 28.070 -5.204 2.732 -0.377 H5 B6A 30 B6A H7 H7 H 0 1 N N N 29.227 18.375 28.956 -5.200 0.944 -1.965 H7 B6A 31 B6A H8 H8 H 0 1 N N N 27.710 17.678 28.292 -3.540 1.402 -2.414 H8 B6A 32 B6A H9 H9 H 0 1 N N N 29.587 16.369 30.330 -4.448 0.457 0.343 H9 B6A 33 B6A H10 H10 H 0 1 N N N 27.958 17.049 30.662 -3.525 -0.505 -0.837 H10 B6A 34 B6A H11 H11 H 0 1 N N N 26.880 15.340 29.325 -1.672 1.123 -0.741 H11 B6A 35 B6A H12 H12 H 0 1 N N N 29.140 13.966 30.839 -1.021 0.773 1.663 H12 B6A 36 B6A H13 H13 H 0 1 N N N 27.780 14.812 31.653 -2.674 0.200 1.990 H13 B6A 37 B6A H14 H14 H 0 1 N N N 25.228 14.947 31.172 1.021 0.248 0.371 H14 B6A 38 B6A H15 H15 H 0 1 N N N 29.146 10.610 30.007 -4.079 -1.366 1.437 H15 B6A 39 B6A H16 H16 H 0 1 N N N 29.351 12.111 29.397 -4.170 -2.992 1.025 H16 B6A 40 B6A H17 H17 H 0 1 N N N 24.023 10.189 30.595 0.612 -4.544 -0.814 H17 B6A 41 B6A H18 H18 H 0 1 N N N 22.260 11.864 31.071 2.737 -3.393 -1.127 H18 B6A 42 B6A H19 H19 H 0 1 N N N 20.050 15.413 31.013 2.242 0.281 1.642 H19 B6A 43 B6A H20 H20 H 0 1 N N N 18.004 14.803 32.270 2.561 2.575 2.469 H20 B6A 44 B6A H21 H21 H 0 1 N N N 18.180 13.299 34.233 3.983 4.150 1.225 H21 B6A 45 B6A H22 H22 H 0 1 N N N 20.362 12.351 34.874 5.096 3.441 -0.851 H22 B6A 46 B6A H23 H23 H 0 1 N N N 22.387 12.934 33.602 4.800 1.149 -1.691 H23 B6A 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B6A CAK NAQ SING N N 1 B6A CAK CAM SING N N 2 B6A NAQ CAL SING N N 3 B6A CAM CAX SING N N 4 B6A CAL CAN SING N N 5 B6A CAX CAN SING N N 6 B6A CAX CAO SING N N 7 B6A NAA CAU SING N N 8 B6A NAP CAU DOUB Y N 9 B6A NAP CAV SING Y N 10 B6A CAU NAY SING Y N 11 B6A CAV CAI DOUB Y N 12 B6A CAV CAW SING Y N 13 B6A NAY CAO SING N N 14 B6A NAY CAW SING Y N 15 B6A CAI CAH SING Y N 16 B6A CAW CAJ DOUB Y N 17 B6A CAH CAT DOUB Y N 18 B6A OAB CAR DOUB N N 19 B6A CAJ CAT SING Y N 20 B6A CAT CAR SING N N 21 B6A CAR CAS SING N N 22 B6A CAF CAS DOUB Y N 23 B6A CAF CAD SING Y N 24 B6A CAS CAG SING Y N 25 B6A CAD CAC DOUB Y N 26 B6A CAG CAE DOUB Y N 27 B6A CAC CAE SING Y N 28 B6A CAM H1 SING N N 29 B6A CAM H2 SING N N 30 B6A CAK H3 SING N N 31 B6A CAK H4 SING N N 32 B6A NAQ H5 SING N N 33 B6A CAL H7 SING N N 34 B6A CAL H8 SING N N 35 B6A CAN H9 SING N N 36 B6A CAN H10 SING N N 37 B6A CAX H11 SING N N 38 B6A CAO H12 SING N N 39 B6A CAO H13 SING N N 40 B6A CAJ H14 SING N N 41 B6A NAA H15 SING N N 42 B6A NAA H16 SING N N 43 B6A CAI H17 SING N N 44 B6A CAH H18 SING N N 45 B6A CAF H19 SING N N 46 B6A CAD H20 SING N N 47 B6A CAC H21 SING N N 48 B6A CAE H22 SING N N 49 B6A CAG H23 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B6A SMILES ACDLabs 12.01 "O=C(c1ccc2nc(N)n(c2c1)CC3CCNCC3)c4ccccc4" B6A InChI InChI 1.03 "InChI=1S/C20H22N4O/c21-20-23-17-7-6-16(19(25)15-4-2-1-3-5-15)12-18(17)24(20)13-14-8-10-22-11-9-14/h1-7,12,14,22H,8-11,13H2,(H2,21,23)" B6A InChIKey InChI 1.03 CMCWMODUNMLBRJ-UHFFFAOYSA-N B6A SMILES_CANONICAL CACTVS 3.370 "Nc1nc2ccc(cc2n1CC3CCNCC3)C(=O)c4ccccc4" B6A SMILES CACTVS 3.370 "Nc1nc2ccc(cc2n1CC3CCNCC3)C(=O)c4ccccc4" B6A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)c2ccc3c(c2)n(c(n3)N)CC4CCNCC4" B6A SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)c2ccc3c(c2)n(c(n3)N)CC4CCNCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B6A "SYSTEMATIC NAME" ACDLabs 12.01 "[2-amino-1-(piperidin-4-ylmethyl)-1H-benzimidazol-6-yl](phenyl)methanone" B6A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-azanyl-3-(piperidin-4-ylmethyl)benzimidazol-5-yl]-phenyl-methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B6A "Create component" 2011-12-22 RCSB #