data_B7J # _chem_comp.id B7J _chem_comp.name "2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N3 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 5-FodCTP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.167 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B7J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WNZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B7J C10 C1 C 0 1 N N R 3.814 6.537 11.840 1.831 2.148 0.800 C10 B7J 1 B7J C26 C2 C 0 1 N N N 7.644 7.947 9.527 4.675 -0.140 -0.943 C26 B7J 2 B7J C01 C3 C 0 1 N N N 9.208 6.821 13.354 6.783 -2.953 1.322 C01 B7J 3 B7J O02 O1 O 0 1 N N N 10.321 6.377 13.539 7.394 -3.837 0.760 O02 B7J 4 B7J C03 C4 C 0 1 N N N 8.659 7.209 12.054 6.040 -1.963 0.538 C03 B7J 5 B7J C04 C5 C 0 1 N N N 7.320 7.173 11.780 5.245 -1.010 1.158 C04 B7J 6 B7J N05 N1 N 0 1 N N N 6.769 7.539 10.572 4.580 -0.119 0.396 N05 B7J 7 B7J C06 C6 C 0 1 N N R 5.342 7.449 10.304 3.737 0.891 1.040 C06 B7J 8 B7J C07 C7 C 0 1 N N N 4.958 5.973 9.917 4.260 2.312 0.724 C07 B7J 9 B7J C08 C8 C 0 1 N N S 4.492 5.357 11.240 2.977 3.157 0.564 C08 B7J 10 B7J O09 O2 O 0 1 N N N 3.526 4.345 11.010 2.936 4.198 1.541 O09 B7J 11 B7J C11 C9 C 0 1 N N N 3.628 6.373 13.347 0.656 2.448 -0.132 C11 B7J 12 B7J O12 O3 O 0 1 N N N 4.826 6.229 14.024 -0.422 1.555 0.158 O12 B7J 13 B7J P13 P1 P 0 1 N N N 5.121 4.990 15.028 -1.824 1.587 -0.634 P13 B7J 14 B7J O14 O4 O 0 1 N N N 6.486 5.342 15.643 -2.399 2.948 -0.564 O14 B7J 15 B7J O15 O5 O 0 1 N N N 3.968 5.047 16.019 -1.579 1.185 -2.174 O15 B7J 16 B7J O16 O6 O 0 1 N N N 5.126 3.763 14.149 -2.843 0.538 0.039 O16 B7J 17 B7J P17 P2 P 0 1 N N N 4.014 2.438 14.075 -4.433 0.305 -0.058 P17 B7J 18 B7J O18 O7 O 0 1 N N N 2.663 3.054 14.434 -5.196 1.447 0.783 O18 B7J 19 B7J O19 O8 O 0 1 N N N 4.034 2.049 12.607 -4.856 0.370 -1.475 O19 B7J 20 B7J O20 O9 O 0 1 N N N 4.459 1.193 14.982 -4.802 -1.142 0.545 O20 B7J 21 B7J P21 P3 P 0 1 N N N 4.051 0.878 16.483 -6.064 -2.129 0.392 P21 B7J 22 B7J O22 O10 O 0 1 N N N 3.386 2.150 17.028 -6.086 -3.167 1.622 O22 B7J 23 B7J O23 O11 O 0 1 N N N 3.134 -0.306 16.445 -7.314 -1.336 0.393 O23 B7J 24 B7J O24 O12 O 0 1 N N N 5.345 0.558 17.228 -5.945 -2.941 -0.993 O24 B7J 25 B7J O25 O13 O 0 1 N N N 4.635 7.664 11.518 2.403 0.858 0.490 O25 B7J 26 B7J O27 O14 O 0 1 N N N 7.179 8.256 8.452 4.059 0.691 -1.589 O27 B7J 27 B7J N28 N2 N 0 1 N N N 8.984 7.979 9.780 5.423 -1.031 -1.591 N28 B7J 28 B7J C29 C10 C 0 1 N N N 9.515 7.640 10.979 6.114 -1.948 -0.929 C29 B7J 29 B7J N30 N3 N 0 1 N N N 10.851 7.694 11.137 6.884 -2.864 -1.600 N30 B7J 30 B7J H1 H1 H 0 1 N N N 2.823 6.654 11.377 1.507 2.178 1.840 H1 B7J 31 B7J H2 H2 H 0 1 N N N 8.571 6.940 14.218 6.786 -2.895 2.400 H2 B7J 32 B7J H3 H3 H 0 1 N N N 6.653 6.837 12.560 5.159 -0.983 2.235 H3 B7J 33 B7J H4 H4 H 0 1 N N N 5.030 8.142 9.509 3.708 0.728 2.118 H4 B7J 34 B7J H5 H5 H 0 1 N N N 4.148 5.961 9.173 4.865 2.689 1.550 H5 B7J 35 B7J H6 H6 H 0 1 N N N 5.830 5.433 9.519 4.835 2.311 -0.202 H6 B7J 36 B7J H7 H7 H 0 1 N N N 5.344 5.015 11.847 2.917 3.574 -0.442 H7 B7J 37 B7J H8 H8 H 0 1 N N N 3.720 3.592 11.555 3.668 4.827 1.477 H8 B7J 38 B7J H9 H9 H 0 1 N N N 3.110 7.262 13.736 0.326 3.476 0.018 H9 B7J 39 B7J H10 H10 H 0 1 N N N 3.012 5.480 13.530 0.970 2.314 -1.167 H10 B7J 40 B7J H11 H11 H 0 1 N N N 4.297 5.298 16.874 -1.203 0.303 -2.295 H11 B7J 41 B7J H12 H12 H 0 1 N N N 2.107 3.069 13.664 -4.966 1.463 1.722 H12 B7J 42 B7J H13 H13 H 0 1 N N N 2.482 1.963 17.254 -6.822 -3.794 1.595 H13 B7J 43 B7J H14 H14 H 0 1 N N N 5.323 -0.342 17.530 -5.148 -3.484 -1.064 H14 B7J 44 B7J H15 H15 H 0 1 N N N 11.433 7.981 10.376 6.987 -2.798 -2.563 H15 B7J 45 B7J H16 H16 H 0 1 N N N 11.261 7.447 12.015 7.324 -3.577 -1.113 H16 B7J 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B7J O27 C26 DOUB N N 1 B7J C26 N28 SING N N 2 B7J C26 N05 SING N N 3 B7J N28 C29 DOUB N N 4 B7J C07 C06 SING N N 5 B7J C07 C08 SING N N 6 B7J C06 N05 SING N N 7 B7J C06 O25 SING N N 8 B7J N05 C04 SING N N 9 B7J C29 N30 SING N N 10 B7J C29 C03 SING N N 11 B7J O09 C08 SING N N 12 B7J C08 C10 SING N N 13 B7J O25 C10 SING N N 14 B7J C04 C03 DOUB N N 15 B7J C10 C11 SING N N 16 B7J C03 C01 SING N N 17 B7J O19 P17 DOUB N N 18 B7J C11 O12 SING N N 19 B7J C01 O02 DOUB N N 20 B7J O12 P13 SING N N 21 B7J P17 O16 SING N N 22 B7J P17 O18 SING N N 23 B7J P17 O20 SING N N 24 B7J O16 P13 SING N N 25 B7J O20 P21 SING N N 26 B7J P13 O14 DOUB N N 27 B7J P13 O15 SING N N 28 B7J O23 P21 DOUB N N 29 B7J P21 O22 SING N N 30 B7J P21 O24 SING N N 31 B7J C10 H1 SING N N 32 B7J C01 H2 SING N N 33 B7J C04 H3 SING N N 34 B7J C06 H4 SING N N 35 B7J C07 H5 SING N N 36 B7J C07 H6 SING N N 37 B7J C08 H7 SING N N 38 B7J O09 H8 SING N N 39 B7J C11 H9 SING N N 40 B7J C11 H10 SING N N 41 B7J O15 H11 SING N N 42 B7J O18 H12 SING N N 43 B7J O22 H13 SING N N 44 B7J O24 H14 SING N N 45 B7J N30 H15 SING N N 46 B7J N30 H16 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B7J SMILES ACDLabs 12.01 "C2(COP(=O)(O)OP(O)(OP(O)(O)=O)=O)C(CC(N1C(N=C(C(C=O)=C1)N)=O)O2)O" B7J InChI InChI 1.03 "InChI=1S/C10H16N3O14P3/c11-9-5(3-14)2-13(10(16)12-9)8-1-6(15)7(25-8)4-24-29(20,21)27-30(22,23)26-28(17,18)19/h2-3,6-8,15H,1,4H2,(H,20,21)(H,22,23)(H2,11,12,16)(H2,17,18,19)/t6-,7+,8+/m0/s1" B7J InChIKey InChI 1.03 UIFNWSMURHAIJK-XLPZGREQSA-N B7J SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1C=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2" B7J SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1C=O)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2" B7J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" B7J SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(OC1N2C=C(C(=NC2=O)N)C=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B7J "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate)" B7J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},5~{R})-5-(4-azanyl-5-methanoyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B7J "Create component" 2017-08-03 RCSB B7J "Initial release" 2017-09-13 RCSB B7J "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id B7J _pdbx_chem_comp_synonyms.name 5-FodCTP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##