data_B86 # _chem_comp.id B86 _chem_comp.name "2'-deoxy-5-fluorocytidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 F N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B86 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IPX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B86 C1 C1 C 0 1 N N N 24.941 -6.782 18.074 3.254 -0.507 -0.368 C1 B86 1 B86 N2 N2 N 0 1 N N N 25.712 -7.887 18.121 2.226 -1.000 -1.045 N2 B86 2 B86 C3 C3 C 0 1 N N N 26.981 -7.789 18.586 0.983 -0.603 -0.780 C3 B86 3 B86 N4 N4 N 0 1 N N N 27.532 -6.549 19.010 0.733 0.307 0.180 N4 B86 4 B86 C5 C5 C 0 1 N N N 26.804 -5.433 18.967 1.758 0.844 0.904 C5 B86 5 B86 C6 C6 C 0 1 N N N 25.507 -5.496 18.507 3.028 0.449 0.646 C6 B86 6 B86 N7 N7 N 0 1 N N N 23.669 -6.808 17.630 4.534 -0.929 -0.648 N7 B86 7 B86 F8 F8 F 0 1 N N N 24.732 -4.408 18.425 4.062 0.963 1.347 F8 B86 8 B86 O9 O9 O 0 1 N N N 27.664 -8.822 18.621 0.054 -1.072 -1.418 O9 B86 9 B86 C10 C10 C 0 1 N N R 28.897 -6.497 19.548 -0.646 0.723 0.449 C10 B86 10 B86 O11 O11 O 0 1 N N N 28.807 -5.866 20.832 -1.480 -0.430 0.697 O11 B86 11 B86 C12 C12 C 0 1 N N R 29.981 -5.106 21.112 -2.831 0.019 0.454 C12 B86 12 B86 C13 C13 C 0 1 N N S 30.846 -5.206 19.892 -2.729 0.919 -0.798 C13 B86 13 B86 O13 O13 O 0 1 N N N 31.834 -6.196 20.208 -3.614 2.035 -0.685 O13 B86 14 B86 C14 C14 C 0 1 N N N 29.929 -5.684 18.786 -1.258 1.393 -0.801 C14 B86 15 B86 C15 C15 C 0 1 N N N 29.612 -3.663 21.368 -3.747 -1.174 0.179 C15 B86 16 B86 O16 O16 O 0 1 N N N 28.901 -3.162 20.242 -3.862 -1.969 1.361 O16 B86 17 B86 H5 H5 H 0 1 N N N 27.225 -4.492 19.289 1.558 1.574 1.674 H5 B86 18 B86 HN7 HN7 H 0 1 N N N 23.265 -7.669 17.320 4.686 -1.589 -1.342 HN7 B86 19 B86 HN7A HN7A H 0 0 N N N 23.129 -5.967 17.610 5.284 -0.567 -0.151 HN7A B86 20 B86 H10 H10 H 0 1 N N N 29.244 -7.540 19.517 -0.677 1.404 1.299 H10 B86 21 B86 H12 H12 H 0 1 N N N 30.501 -5.483 22.005 -3.198 0.593 1.305 H12 B86 22 B86 H13 H13 H 0 1 N N N 31.338 -4.270 19.589 -2.950 0.346 -1.699 H13 B86 23 B86 HO13 HO13 H 0 0 N N N 32.419 -6.307 19.468 -3.591 2.633 -1.445 HO13 B86 24 B86 H14 H14 H 0 1 N N N 30.465 -6.293 18.043 -1.207 2.478 -0.717 H14 B86 25 B86 H14A H14A H 0 0 N N N 29.471 -4.845 18.242 -0.750 1.054 -1.704 H14A B86 26 B86 H15 H15 H 0 1 N N N 28.979 -3.597 22.265 -4.734 -0.815 -0.114 H15 B86 27 B86 H15A H15A H 0 0 N N N 30.525 -3.069 21.523 -3.327 -1.778 -0.625 H15A B86 28 B86 HO16 HO16 H 0 0 N N N 28.665 -2.255 20.394 -4.429 -2.746 1.260 HO16 B86 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B86 C1 N2 DOUB N N 1 B86 C1 C6 SING N N 2 B86 C1 N7 SING N N 3 B86 N2 C3 SING N N 4 B86 C3 N4 SING N N 5 B86 C3 O9 DOUB N N 6 B86 N4 C5 SING N N 7 B86 N4 C10 SING N N 8 B86 C5 C6 DOUB N N 9 B86 C6 F8 SING N N 10 B86 C10 O11 SING N N 11 B86 C10 C14 SING N N 12 B86 O11 C12 SING N N 13 B86 C12 C13 SING N N 14 B86 C12 C15 SING N N 15 B86 C13 O13 SING N N 16 B86 C13 C14 SING N N 17 B86 C15 O16 SING N N 18 B86 C5 H5 SING N N 19 B86 N7 HN7 SING N N 20 B86 N7 HN7A SING N N 21 B86 C10 H10 SING N N 22 B86 C12 H12 SING N N 23 B86 C13 H13 SING N N 24 B86 O13 HO13 SING N N 25 B86 C14 H14 SING N N 26 B86 C14 H14A SING N N 27 B86 C15 H15 SING N N 28 B86 C15 H15A SING N N 29 B86 O16 HO16 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B86 SMILES ACDLabs 11.02 "FC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)CO)N" B86 SMILES_CANONICAL CACTVS 3.352 "NC1=NC(=O)N(C=C1F)[C@H]2C[C@H](O)[C@@H](CO)O2" B86 SMILES CACTVS 3.352 "NC1=NC(=O)N(C=C1F)[CH]2C[CH](O)[CH](CO)O2" B86 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)F)CO)O" B86 SMILES "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C=C(C(=NC2=O)N)F)CO)O" B86 InChI InChI 1.03 "InChI=1S/C9H12FN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1" B86 InChIKey InChI 1.03 IDYKCXHJJGMAEV-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B86 "SYSTEMATIC NAME" ACDLabs 11.02 "2'-deoxy-5-fluorocytidine" B86 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "4-azanyl-5-fluoro-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B86 "Create component" 2009-08-19 RCSB B86 "Modify descriptor" 2011-06-04 RCSB #