data_BAZ # _chem_comp.id BAZ _chem_comp.name "BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANE ZINC" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 N8 Zn" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.772 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BAZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BAZ C1 C1 C 0 1 Y N N 29.152 14.920 17.043 ? ? ? C1 BAZ 1 BAZ C2 C2 C 0 1 Y N N 28.604 15.593 18.185 ? ? ? C2 BAZ 2 BAZ C3 C3 C 0 1 Y N N 28.163 14.901 19.340 ? ? ? C3 BAZ 3 BAZ C4 C4 C 0 1 Y N N 28.296 13.518 19.292 ? ? ? C4 BAZ 4 BAZ C5 C5 C 0 1 Y N N 28.808 12.844 18.245 ? ? ? C5 BAZ 5 BAZ C6 C6 C 0 1 Y N N 29.246 13.510 17.115 ? ? ? C6 BAZ 6 BAZ C7 C7 C 0 1 N N N 29.466 15.610 15.861 ? ? ? C7 BAZ 7 BAZ N1 N1 N 0 1 N N N 30.147 14.980 14.899 ? ? ? N1 BAZ 8 BAZ N2 N2 N 0 1 N N N 29.077 16.875 15.689 ? ? ? N2 BAZ 9 BAZ N3 N3 N 0 1 Y N N 27.961 12.639 20.209 ? ? ? N3 BAZ 10 BAZ N4 N4 N 0 1 Y N N 28.811 11.547 18.516 ? ? ? N4 BAZ 11 BAZ C8 C8 C 0 1 Y N N 28.279 11.441 19.724 ? ? ? C8 BAZ 12 BAZ "C1'" "C1'" C 0 1 Y N N 29.942 10.146 26.173 ? ? ? "C1'" BAZ 13 BAZ "C2'" "C2'" C 0 1 Y N N 29.358 11.449 26.170 ? ? ? "C2'" BAZ 14 BAZ "C3'" "C3'" C 0 1 Y N N 28.710 11.990 25.031 ? ? ? "C3'" BAZ 15 BAZ "C4'" "C4'" C 0 1 Y N N 28.662 11.183 23.897 ? ? ? "C4'" BAZ 16 BAZ "C5'" "C5'" C 0 1 Y N N 29.198 9.947 23.857 ? ? ? "C5'" BAZ 17 BAZ "C6'" "C6'" C 0 1 Y N N 29.845 9.398 24.965 ? ? ? "C6'" BAZ 18 BAZ "C7'" "C7'" C 0 1 N N N 30.693 9.714 27.286 ? ? ? "C7'" BAZ 19 BAZ "N1'" "N1'" N 0 1 N N N 30.990 8.426 27.504 ? ? ? "N1'" BAZ 20 BAZ "N2'" "N2'" N 0 1 N N N 31.157 10.609 28.153 ? ? ? "N2'" BAZ 21 BAZ "N3'" "N3'" N 0 1 Y N N 28.111 11.464 22.724 ? ? ? "N3'" BAZ 22 BAZ "N4'" "N4'" N 0 1 Y N N 28.980 9.439 22.649 ? ? ? "N4'" BAZ 23 BAZ "C8'" "C8'" C 0 1 Y N N 28.333 10.377 21.971 ? ? ? "C8'" BAZ 24 BAZ C9 C9 C 0 1 N N N 27.998 10.241 20.526 ? ? ? C9 BAZ 25 BAZ ZN ZN ZN 2 0 N N N 27.042 13.023 22.273 ? ? ? ZN BAZ 26 BAZ H2 H2 H 0 1 N N N 28.524 16.670 18.164 ? ? ? H2 BAZ 27 BAZ H3 H3 H 0 1 N N N 27.752 15.412 20.198 ? ? ? H3 BAZ 28 BAZ H6 H6 H 0 1 N N N 29.660 12.954 16.287 ? ? ? H6 BAZ 29 BAZ HN1 HN1 H 0 1 N N N 30.300 15.566 14.103 ? ? ? HN1 BAZ 30 BAZ HN21 HN21 H 0 0 N N N 29.295 17.354 14.839 ? ? ? HN21 BAZ 31 BAZ HN22 HN22 H 0 0 N N N 28.568 17.344 16.410 ? ? ? HN22 BAZ 32 BAZ HN4 HN4 H 0 1 N N N 29.144 10.806 17.933 ? ? ? HN4 BAZ 33 BAZ "H2'" "H2'" H 0 1 N N N 29.412 12.045 27.069 ? ? ? "H2'" BAZ 34 BAZ "H3'" "H3'" H 0 1 N N N 28.275 12.979 25.042 ? ? ? "H3'" BAZ 35 BAZ "H6'" "H6'" H 0 1 N N N 30.271 8.407 24.906 ? ? ? "H6'" BAZ 36 BAZ "H1'" "H1'" H 0 1 N N N 31.546 8.304 28.326 ? ? ? "H1'" BAZ 37 BAZ "H2'1" "H2'1" H 0 0 N N N 31.706 10.311 28.934 ? ? ? "H2'1" BAZ 38 BAZ "H2'2" "H2'2" H 0 0 N N N 30.957 11.580 28.024 ? ? ? "H2'2" BAZ 39 BAZ "HN4'" "HN4'" H 0 0 N N N 29.249 8.534 22.319 ? ? ? "HN4'" BAZ 40 BAZ H91 H91 H 0 1 N N N 26.925 10.013 20.441 ? ? ? H91 BAZ 41 BAZ H92 H92 H 0 1 N N N 28.584 9.406 20.114 ? ? ? H92 BAZ 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BAZ C1 C2 SING Y N 1 BAZ C1 C6 DOUB Y N 2 BAZ C1 C7 SING N N 3 BAZ C2 C3 DOUB Y N 4 BAZ C2 H2 SING N N 5 BAZ C3 C4 SING Y N 6 BAZ C3 H3 SING N N 7 BAZ C4 C5 DOUB Y N 8 BAZ C4 N3 SING Y N 9 BAZ C5 C6 SING Y N 10 BAZ C5 N4 SING Y N 11 BAZ C6 H6 SING N N 12 BAZ C7 N1 DOUB N N 13 BAZ C7 N2 SING N N 14 BAZ N1 HN1 SING N N 15 BAZ N2 HN21 SING N N 16 BAZ N2 HN22 SING N N 17 BAZ N3 C8 DOUB Y N 18 BAZ N4 C8 SING Y N 19 BAZ N4 HN4 SING N N 20 BAZ C8 C9 SING N N 21 BAZ "C1'" "C2'" SING Y N 22 BAZ "C1'" "C6'" DOUB Y N 23 BAZ "C1'" "C7'" SING N N 24 BAZ "C2'" "C3'" DOUB Y N 25 BAZ "C2'" "H2'" SING N N 26 BAZ "C3'" "C4'" SING Y N 27 BAZ "C3'" "H3'" SING N N 28 BAZ "C4'" "C5'" DOUB Y N 29 BAZ "C4'" "N3'" SING Y N 30 BAZ "C5'" "C6'" SING Y N 31 BAZ "C5'" "N4'" SING Y N 32 BAZ "C6'" "H6'" SING N N 33 BAZ "C7'" "N1'" DOUB N N 34 BAZ "C7'" "N2'" SING N N 35 BAZ "N1'" "H1'" SING N N 36 BAZ "N2'" "H2'1" SING N N 37 BAZ "N2'" "H2'2" SING N N 38 BAZ "N3'" "C8'" DOUB Y N 39 BAZ "N3'" ZN SING N N 40 BAZ "N4'" "C8'" SING Y N 41 BAZ "N4'" "HN4'" SING N N 42 BAZ "C8'" C9 SING N N 43 BAZ ZN N3 SING N N 44 BAZ C9 H91 SING N N 45 BAZ C9 H92 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BAZ InChI InChI 1.06 "InChI=1S/C17H16N8.Zn/c18-16(19)8-1-3-10-12(5-8)24-14(22-10)7-15-23-11-4-2-9(17(20)21)6-13(11)25-15;/h1-6H,7H2,(H3,18,19)(H3,20,21)(H,22,24)(H,23,25);/q;+2" BAZ InChIKey InChI 1.06 YKSMKIJLUWPKOX-UHFFFAOYSA-N BAZ SMILES_CANONICAL CACTVS 3.385 "[Zn++].NC(=N)c1ccc2nc(Cc3[nH]c4cc(ccc4n3)C(N)=N)[nH]c2c1" BAZ SMILES CACTVS 3.385 "[Zn++].NC(=N)c1ccc2nc(Cc3[nH]c4cc(ccc4n3)C(N)=N)[nH]c2c1" BAZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\c1ccc2c(c1)NC3=[N]2[Zn+2][N]4=C(C3)Nc5c4ccc(c5)C(=N)N)/N" BAZ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=N)N)NC3=[N]2[Zn+2][N]4=C(C3)Nc5c4ccc(c5)C(=N)N" # _pdbx_chem_comp_identifier.comp_id BAZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program OpenEye/Lexichem _pdbx_chem_comp_identifier.program_version 1.4 _pdbx_chem_comp_identifier.identifier "[5-carbamimidoyl-2-[(6-carbamimidoyl-1H-benzoimidazol-2-yl)methyl]-3H-benzoimidazol-1-yl]zinc" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BAZ "Create component" 1999-07-08 EBI BAZ "Modify descriptor" 2023-09-23 RCSB #