data_BDG # _chem_comp.id BDG _chem_comp.name "2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H14 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 2,6-diamino-2,6-dideoxy-alpha-D-glucose; 2,6-diamino-2,6-dideoxy-D-glucose; 2,6-diamino-2,6-dideoxy-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.186 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BDG "O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE" PDB ? 2 BDG "2,6-diamino-2,6-dideoxy-alpha-D-glucose" PDB ? 3 BDG "2,6-diamino-2,6-dideoxy-D-glucose" PDB ? 4 BDG "2,6-diamino-2,6-dideoxy-glucose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BDG C5 C5 C 0 1 N N R 7.407 3.021 3.058 -0.055 0.088 1.153 C5 BDG 1 BDG O5 O5 O 0 1 N N N 8.574 2.187 2.901 1.083 -0.696 0.805 O5 BDG 2 BDG C1 C1 C 0 1 N N S 8.266 0.775 2.848 1.573 -0.215 -0.444 C1 BDG 3 BDG O1 O1 O 0 1 N Y N 7.499 0.430 1.668 1.770 1.197 -0.365 O1 BDG 4 BDG C2 C2 C 0 1 N N R 7.544 0.331 4.126 0.562 -0.525 -1.551 C2 BDG 5 BDG N2 N2 N 0 1 N N N 7.056 -1.027 3.973 1.085 -0.054 -2.840 N2 BDG 6 BDG C3 C3 C 0 1 N N R 6.374 1.249 4.462 -0.756 0.189 -1.237 C3 BDG 7 BDG O3 O3 O 0 1 N N N 5.888 0.948 5.761 -1.753 -0.207 -2.181 O3 BDG 8 BDG C4 C4 C 0 1 N N S 6.729 2.726 4.386 -1.198 -0.198 0.177 C4 BDG 9 BDG O4 O4 O 0 1 N N N 5.561 3.522 4.523 -2.346 0.569 0.547 O4 BDG 10 BDG C6 C6 C 0 1 N N N 7.813 4.492 3.062 -0.500 -0.262 2.575 C6 BDG 11 BDG N6 N6 N 0 1 N N N 8.971 4.708 2.214 0.595 0.015 3.513 N6 BDG 12 BDG H5 H5 H 0 1 N N N 6.730 2.778 2.227 0.205 1.145 1.106 H5 BDG 13 BDG H1 H1 H 0 1 N N N 9.219 0.246 2.786 2.521 -0.702 -0.673 H1 BDG 14 BDG HO1 HO1 H 0 1 N Y N 7.296 -0.497 1.633 2.416 1.350 0.338 HO1 BDG 15 BDG H2 H2 H 0 1 N N N 8.255 0.388 4.960 0.391 -1.601 -1.598 H2 BDG 16 BDG HN21 HN21 H 0 0 N N N 6.747 -1.342 3.097 1.952 -0.545 -2.998 HN21 BDG 17 BDG HN22 HN22 H 0 0 N Y N 6.424 -1.363 4.644 0.439 -0.370 -3.548 HN22 BDG 18 BDG H3 H3 H 0 1 N N N 5.623 1.074 3.697 -0.609 1.268 -1.293 H3 BDG 19 BDG HO3 HO3 H 0 1 N Y N 6.552 1.141 6.440 -1.426 0.044 -3.055 HO3 BDG 20 BDG H4 H4 H 0 1 N N N 7.428 2.989 5.178 -1.445 -1.259 0.204 H4 BDG 21 BDG HO4 HO4 H 0 1 N Y N 5.105 3.299 5.341 -3.038 0.364 -0.096 HO4 BDG 22 BDG H61 H61 H 0 1 N N N 7.983 4.740 4.133 -0.761 -1.319 2.623 H61 BDG 23 BDG H62 H62 H 0 1 N N N 6.940 5.076 2.757 -1.369 0.338 2.842 H62 BDG 24 BDG HN61 HN61 H 0 0 N N N 9.840 4.328 2.460 0.258 -0.229 4.432 HN61 BDG 25 BDG HN62 HN62 H 0 0 N N N 9.136 5.592 1.823 1.336 -0.633 3.293 HN62 BDG 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDG C5 O5 SING N N 1 BDG C5 C4 SING N N 2 BDG C5 C6 SING N N 3 BDG C5 H5 SING N N 4 BDG O5 C1 SING N N 5 BDG C1 O1 SING N N 6 BDG C1 C2 SING N N 7 BDG C1 H1 SING N N 8 BDG O1 HO1 SING N N 9 BDG C2 N2 SING N N 10 BDG C2 C3 SING N N 11 BDG C2 H2 SING N N 12 BDG N2 HN21 SING N N 13 BDG N2 HN22 SING N N 14 BDG C3 O3 SING N N 15 BDG C3 C4 SING N N 16 BDG C3 H3 SING N N 17 BDG O3 HO3 SING N N 18 BDG C4 O4 SING N N 19 BDG C4 H4 SING N N 20 BDG O4 HO4 SING N N 21 BDG C6 N6 SING N N 22 BDG C6 H61 SING N N 23 BDG C6 H62 SING N N 24 BDG N6 HN61 SING N N 25 BDG N6 HN62 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BDG SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1N)CN" BDG SMILES_CANONICAL CACTVS 3.341 "NC[C@H]1O[C@H](O)[C@H](N)[C@@H](O)[C@@H]1O" BDG SMILES CACTVS 3.341 "NC[CH]1O[CH](O)[CH](N)[CH](O)[CH]1O" BDG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)N" BDG SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)N)O)O)N" BDG InChI InChI 1.03 "InChI=1S/C6H14N2O4/c7-1-2-4(9)5(10)3(8)6(11)12-2/h2-6,9-11H,1,7-8H2/t2-,3-,4-,5-,6+/m1/s1" BDG InChIKey InChI 1.03 SQTHUUHOUPJYLK-UKFBFLRUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDG "SYSTEMATIC NAME" ACDLabs 10.04 "2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose" BDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R,5S,6R)-3-amino-6-(aminomethyl)oxane-2,4,5-triol" BDG "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpN[6N]a BDG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpN6N # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BDG "CARBOHYDRATE ISOMER" D PDB ? BDG "CARBOHYDRATE RING" pyranose PDB ? BDG "CARBOHYDRATE ANOMER" alpha PDB ? BDG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BDG "Create component" 1999-07-08 RCSB BDG "Modify descriptor" 2011-06-04 RCSB BDG "Other modification" 2020-07-03 RCSB BDG "Modify name" 2020-07-17 RCSB BDG "Modify synonyms" 2020-07-17 RCSB BDG "Modify linking type" 2020-07-17 RCSB BDG "Modify leaving atom flag" 2020-07-17 RCSB ##