data_BIV # _chem_comp.id BIV _chem_comp.name "21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)-, (1A,3B,5Z,7E)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H54 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms GEMINI _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-06-20 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BIV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BIV O2 O2 O 0 1 N N N 0.527 40.012 40.128 8.704 1.720 0.257 O2 BIV 1 BIV O3 O3 O 0 1 N N N 5.309 26.687 34.189 -6.964 -1.755 0.499 O3 BIV 2 BIV C1 C1 C 0 1 N N S 2.954 38.841 38.821 6.424 -0.285 -1.959 C1 BIV 3 BIV C2 C2 C 0 1 N N N 2.195 40.126 38.349 7.749 0.237 -1.393 C2 BIV 4 BIV C3 C3 C 0 1 N N R 0.641 40.021 38.704 7.480 1.120 -0.174 C3 BIV 5 BIV C4 C4 C 0 1 N N N -0.013 38.700 38.121 6.899 0.274 0.963 C4 BIV 6 BIV C5 C5 C 0 1 N N N 0.749 37.388 38.437 5.634 -0.394 0.463 C5 BIV 7 BIV C6 C6 C 0 1 N N N 0.164 36.202 38.900 4.499 -0.394 1.192 C6 BIV 8 BIV C7 C7 C 0 1 N N N 0.731 34.862 39.215 3.296 -1.050 0.674 C7 BIV 9 BIV C8 C8 C 0 1 N N N 0.293 33.676 38.967 2.174 -1.050 1.395 C8 BIV 10 BIV C9 C9 C 0 1 N N N -1.086 33.337 38.197 2.083 -0.386 2.761 C9 BIV 11 BIV C10 C10 C 0 1 N N N 2.302 37.573 38.146 5.703 -1.044 -0.863 C10 BIV 12 BIV C11 C11 C 0 1 N N N -0.854 32.483 36.842 0.868 0.536 2.834 C11 BIV 13 BIV C12 C12 C 0 1 N N N 0.149 31.230 37.131 -0.407 -0.158 2.327 C12 BIV 14 BIV C13 C13 C 0 1 N N R 1.528 31.509 38.064 -0.159 -0.578 0.897 C13 BIV 15 BIV C14 C14 C 0 1 N N S 1.048 32.387 39.376 0.911 -1.699 0.914 C14 BIV 16 BIV C15 C15 C 0 1 N N N 2.528 32.527 40.201 0.885 -2.155 -0.547 C15 BIV 17 BIV C16 C16 C 0 1 N N N 3.213 31.141 39.832 -0.636 -2.175 -0.873 C16 BIV 18 BIV C17 C17 C 0 1 N N R 2.162 30.405 38.932 -1.307 -1.204 0.119 C17 BIV 19 BIV C18 C18 C 0 1 N N N 2.497 32.424 36.959 0.380 0.615 0.105 C18 BIV 20 BIV C19 C19 C 0 1 N N N 3.018 36.705 37.346 5.157 -2.239 -1.084 C19 BIV 21 BIV C20 C20 C 0 1 N N N 2.769 29.197 38.011 -2.077 -0.128 -0.649 C20 BIV 22 BIV C22 C22 C 0 1 N N N 4.011 29.247 37.027 -3.226 -0.778 -1.424 C22 BIV 23 BIV C23 C23 C 0 1 N N N 3.552 28.976 35.574 -4.209 -1.414 -0.439 C23 BIV 24 BIV C24 C24 C 0 1 N N N 4.529 28.989 34.492 -5.306 -2.145 -1.215 C24 BIV 25 BIV C25 C25 C 0 1 N N N 4.835 27.831 33.519 -6.290 -2.782 -0.231 C25 BIV 26 BIV C26 C26 C 0 1 N N N 3.587 27.494 32.708 -5.526 -3.682 0.742 C26 BIV 27 BIV C27 C27 C 0 1 N N N 5.961 28.247 32.490 -7.314 -3.616 -1.002 C27 BIV 28 BIV O1 O1 O 0 1 N N N 4.405 38.971 38.476 5.621 0.814 -2.393 O1 BIV 29 BIV C21 C21 C 0 1 N N N 3.073 28.025 38.858 -2.642 0.896 0.337 C21 BIV 30 BIV C28 C28 C 0 1 N N N 3.985 26.879 39.223 -3.317 2.031 -0.437 C28 BIV 31 BIV C29 C29 C 0 1 N N N 3.878 26.632 40.741 -3.768 3.118 0.541 C29 BIV 32 BIV C30 C30 C 0 1 N N N 3.163 25.279 41.112 -4.442 4.252 -0.232 C30 BIV 33 BIV O4 O4 O 0 1 N N N 3.195 24.266 39.934 -5.642 3.768 -0.839 O4 BIV 34 BIV C32 C32 C 0 1 N N N 1.702 25.567 41.507 -4.781 5.394 0.728 C32 BIV 35 BIV C33 C33 C 0 1 N N N 3.888 24.637 42.316 -3.493 4.764 -1.318 C33 BIV 36 BIV HO2 HO2 H 0 1 N N N 1.394 40.010 40.516 8.609 2.295 1.029 HO2 BIV 37 BIV HO3 HO3 H 0 1 N N N 5.416 25.977 33.567 -7.604 -2.086 1.143 HO3 BIV 38 BIV H1 H1 H 0 1 N N N 2.873 38.723 39.912 6.621 -0.951 -2.799 H1 BIV 39 BIV H21 1H2 H 0 1 N N N 2.305 40.224 37.259 8.374 -0.606 -1.098 H21 BIV 40 BIV H22 2H2 H 0 1 N N N 2.622 41.004 38.857 8.265 0.819 -2.156 H22 BIV 41 BIV H3 H3 H 0 1 N N N 0.111 40.874 38.255 6.769 1.901 -0.443 H3 BIV 42 BIV H41 1H4 H 0 1 N N N 0.001 38.807 37.026 7.622 -0.486 1.261 H41 BIV 43 BIV H42 2H4 H 0 1 N N N -1.021 38.610 38.552 6.665 0.913 1.814 H42 BIV 44 BIV H6 H6 H 0 1 N N N -0.902 36.274 39.059 4.477 0.089 2.158 H6 BIV 45 BIV H7 H7 H 0 1 N N N 1.673 34.889 39.743 3.317 -1.533 -0.292 H7 BIV 46 BIV H91 1H9 H 0 1 N N N -1.552 34.292 37.913 1.996 -1.155 3.529 H91 BIV 47 BIV H92 2H9 H 0 1 N N N -1.725 32.749 38.872 2.987 0.196 2.938 H92 BIV 48 BIV H111 1H11 H 0 0 N N N -0.404 33.135 36.079 0.717 0.845 3.868 H111 BIV 49 BIV H112 2H11 H 0 0 N N N -1.821 32.098 36.486 1.056 1.421 2.225 H112 BIV 50 BIV H121 1H12 H 0 0 N N N 0.536 30.951 36.140 -0.619 -1.035 2.938 H121 BIV 51 BIV H122 2H12 H 0 0 N N N -0.442 30.469 37.662 -1.247 0.535 2.368 H122 BIV 52 BIV H14 H14 H 0 1 N N N 0.279 31.951 40.031 0.614 -2.507 1.583 H14 BIV 53 BIV H151 1H15 H 0 0 N N N 2.426 32.705 41.282 1.407 -1.441 -1.184 H151 BIV 54 BIV H152 2H15 H 0 0 N N N 3.118 33.390 39.860 1.315 -3.151 -0.649 H152 BIV 55 BIV H161 1H16 H 0 0 N N N 3.474 30.557 40.727 -0.803 -1.846 -1.899 H161 BIV 56 BIV H162 2H16 H 0 0 N N N 4.157 31.298 39.290 -1.036 -3.179 -0.732 H162 BIV 57 BIV H17 H17 H 0 1 N N N 1.432 29.887 39.571 -1.974 -1.740 0.794 H17 BIV 58 BIV H181 1H18 H 0 0 N N N 3.405 31.855 36.710 1.307 0.963 0.560 H181 BIV 59 BIV H182 2H18 H 0 0 N N N 2.779 33.380 37.424 0.571 0.312 -0.924 H182 BIV 60 BIV H183 3H18 H 0 0 N N N 1.923 32.618 36.041 -0.355 1.420 0.116 H183 BIV 61 BIV H191 1H19 H 0 0 N N N 2.659 35.822 36.838 5.223 -2.690 -2.063 H191 BIV 62 BIV H192 2H19 H 0 0 N N N 4.019 37.110 37.345 4.649 -2.757 -0.284 H192 BIV 63 BIV H20 H20 H 0 1 N N N 1.925 29.229 37.307 -1.405 0.372 -1.347 H20 BIV 64 BIV H221 1H22 H 0 0 N N N 4.737 28.476 37.325 -3.741 -0.020 -2.013 H221 BIV 65 BIV H222 2H22 H 0 0 N N N 4.476 30.242 37.081 -2.828 -1.546 -2.087 H222 BIV 66 BIV H231 1H23 H 0 0 N N N 2.895 29.828 35.344 -3.679 -2.123 0.197 H231 BIV 67 BIV H232 2H23 H 0 0 N N N 3.110 27.969 35.575 -4.658 -0.637 0.179 H232 BIV 68 BIV H241 1H24 H 0 0 N N N 5.463 29.006 35.073 -5.836 -1.436 -1.851 H241 BIV 69 BIV H242 2H24 H 0 0 N N N 4.196 29.809 33.838 -4.857 -2.923 -1.834 H242 BIV 70 BIV H261 1H26 H 0 0 N N N 3.736 26.537 32.187 -6.227 -4.135 1.444 H261 BIV 71 BIV H262 2H26 H 0 0 N N N 3.404 28.289 31.970 -5.012 -4.466 0.185 H262 BIV 72 BIV H263 3H26 H 0 0 N N N 2.722 27.413 33.382 -4.796 -3.088 1.291 H263 BIV 73 BIV H271 1H27 H 0 0 N N N 6.746 27.477 32.475 -7.858 -2.974 -1.695 H271 BIV 74 BIV H272 2H27 H 0 0 N N N 6.397 29.210 32.794 -6.800 -4.399 -1.559 H272 BIV 75 BIV H273 3H27 H 0 0 N N N 5.523 28.344 31.486 -8.015 -4.069 -0.300 H273 BIV 76 BIV HO1 HO1 H 0 1 N N N 4.505 38.999 37.532 4.766 0.554 -2.763 HO1 BIV 77 BIV H211 1H21 H 0 0 N N N 2.533 27.374 38.155 -3.374 0.412 0.984 H211 BIV 78 BIV H212 2H21 H 0 0 N N N 3.098 28.546 39.826 -1.833 1.301 0.944 H212 BIV 79 BIV H281 1H28 H 0 0 N N N 5.023 27.124 38.954 -2.610 2.454 -1.150 H281 BIV 80 BIV H282 2H28 H 0 0 N N N 3.683 25.974 38.676 -4.183 1.641 -0.971 H282 BIV 81 BIV H291 1H29 H 0 0 N N N 3.269 27.446 41.160 -4.475 2.694 1.255 H291 BIV 82 BIV H292 2H29 H 0 0 N N N 4.897 26.605 41.156 -2.901 3.507 1.076 H292 BIV 83 BIV HO4 HO4 H 0 1 N N N 3.202 24.738 39.110 -6.291 3.427 -0.208 HO4 BIV 84 BIV H321 1H32 H 0 0 N N N 1.057 24.753 41.144 -3.865 5.763 1.191 H321 BIV 85 BIV H322 2H32 H 0 0 N N N 1.381 26.518 41.057 -5.261 6.202 0.177 H322 BIV 86 BIV H323 3H32 H 0 0 N N N 1.624 25.636 42.602 -5.457 5.029 1.502 H323 BIV 87 BIV H331 1H33 H 0 0 N N N 3.423 23.668 42.549 -3.251 3.951 -2.002 H331 BIV 88 BIV H332 2H33 H 0 0 N N N 3.808 25.302 43.189 -3.973 5.572 -1.869 H332 BIV 89 BIV H333 3H33 H 0 0 N N N 4.949 24.484 42.067 -2.578 5.133 -0.855 H333 BIV 90 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BIV O2 C3 SING N N 1 BIV O2 HO2 SING N N 2 BIV O3 C25 SING N N 3 BIV O3 HO3 SING N N 4 BIV C1 C2 SING N N 5 BIV C1 C10 SING N N 6 BIV C1 O1 SING N N 7 BIV C1 H1 SING N N 8 BIV C2 C3 SING N N 9 BIV C2 H21 SING N N 10 BIV C2 H22 SING N N 11 BIV C3 C4 SING N N 12 BIV C3 H3 SING N N 13 BIV C4 C5 SING N N 14 BIV C4 H41 SING N N 15 BIV C4 H42 SING N N 16 BIV C5 C6 DOUB N Z 17 BIV C5 C10 SING N N 18 BIV C6 C7 SING N N 19 BIV C6 H6 SING N N 20 BIV C7 C8 DOUB N E 21 BIV C7 H7 SING N N 22 BIV C8 C9 SING N N 23 BIV C8 C14 SING N N 24 BIV C9 C11 SING N N 25 BIV C9 H91 SING N N 26 BIV C9 H92 SING N N 27 BIV C10 C19 DOUB N N 28 BIV C11 C12 SING N N 29 BIV C11 H111 SING N N 30 BIV C11 H112 SING N N 31 BIV C12 C13 SING N N 32 BIV C12 H121 SING N N 33 BIV C12 H122 SING N N 34 BIV C13 C14 SING N N 35 BIV C13 C17 SING N N 36 BIV C13 C18 SING N N 37 BIV C14 C15 SING N N 38 BIV C14 H14 SING N N 39 BIV C15 C16 SING N N 40 BIV C15 H151 SING N N 41 BIV C15 H152 SING N N 42 BIV C16 C17 SING N N 43 BIV C16 H161 SING N N 44 BIV C16 H162 SING N N 45 BIV C17 C20 SING N N 46 BIV C17 H17 SING N N 47 BIV C18 H181 SING N N 48 BIV C18 H182 SING N N 49 BIV C18 H183 SING N N 50 BIV C19 H191 SING N N 51 BIV C19 H192 SING N N 52 BIV C20 C22 SING N N 53 BIV C20 C21 SING N N 54 BIV C20 H20 SING N N 55 BIV C22 C23 SING N N 56 BIV C22 H221 SING N N 57 BIV C22 H222 SING N N 58 BIV C23 C24 SING N N 59 BIV C23 H231 SING N N 60 BIV C23 H232 SING N N 61 BIV C24 C25 SING N N 62 BIV C24 H241 SING N N 63 BIV C24 H242 SING N N 64 BIV C25 C26 SING N N 65 BIV C25 C27 SING N N 66 BIV C26 H261 SING N N 67 BIV C26 H262 SING N N 68 BIV C26 H263 SING N N 69 BIV C27 H271 SING N N 70 BIV C27 H272 SING N N 71 BIV C27 H273 SING N N 72 BIV O1 HO1 SING N N 73 BIV C21 C28 SING N N 74 BIV C21 H211 SING N N 75 BIV C21 H212 SING N N 76 BIV C28 C29 SING N N 77 BIV C28 H281 SING N N 78 BIV C28 H282 SING N N 79 BIV C29 C30 SING N N 80 BIV C29 H291 SING N N 81 BIV C29 H292 SING N N 82 BIV C30 O4 SING N N 83 BIV C30 C32 SING N N 84 BIV C30 C33 SING N N 85 BIV O4 HO4 SING N N 86 BIV C32 H321 SING N N 87 BIV C32 H322 SING N N 88 BIV C32 H323 SING N N 89 BIV C33 H331 SING N N 90 BIV C33 H332 SING N N 91 BIV C33 H333 SING N N 92 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BIV SMILES ACDLabs 10.04 "OC3C(=C)/C(=C\C=C1/CCCC2(C)C(C(CCCC(O)(C)C)CCCC(O)(C)C)CCC12)CC(O)C3" BIV InChI InChI 1.03 "InChI=1S/C32H54O4/c1-22-25(20-26(33)21-29(22)34)14-13-24-12-9-19-32(6)27(15-16-28(24)32)23(10-7-17-30(2,3)35)11-8-18-31(4,5)36/h13-14,23,26-29,33-36H,1,7-12,15-21H2,2-6H3/b24-13+,25-14-/t26-,27-,28+,29+,32-/m1/s1" BIV InChIKey InChI 1.03 WTQXZYVWLNPNEX-LKUPKUSPSA-N BIV SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)CCCC(CCCC(C)(C)O)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C" BIV SMILES CACTVS 3.385 "CC(C)(O)CCCC(CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C" BIV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C[C@]12CCC/C(=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)/[C@@H]1CC[C@@H]2C(CCCC(C)(C)O)CCCC(C)(C)O" BIV SMILES "OpenEye OEToolkits" 1.7.5 "CC12CCCC(=CC=C3CC(CC(C3=C)O)O)C1CCC2C(CCCC(C)(C)O)CCCC(C)(C)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BIV "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,3S,5Z)-5-[(2E)-2-{(1R,3aS,7aR)-1-[5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-methylhexyl]-7a-methyloctahydro-4H-inden-4-ylidene}ethylidene]-4-methylidenecyclohexane-1,3-diol (non-preferred name)" BIV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-(2,10-dihydroxy-2,10-dimethyl-undecan-6-yl)-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BIV "Create component" 2006-06-20 RCSB BIV "Modify descriptor" 2011-06-04 RCSB BIV "Modify descriptor" 2012-01-05 RCSB BIV "Modify coordinates" 2012-01-05 RCSB BIV "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BIV _pdbx_chem_comp_synonyms.name GEMINI _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##