data_BMX # _chem_comp.id BMX _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H16 N O9 P" _chem_comp.mon_nstd_parent_comp_id BM3 _chem_comp.pdbx_synonyms ;2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE; N-acetyl-6-O-phosphono-alpha-D-mannosamine; 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannose; 2-acetamido-2-deoxy-6-O-phosphono-D-mannose; 2-acetamido-2-deoxy-6-O-phosphono-mannose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-10 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BMX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YI1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BMX "2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE" PDB ? 2 BMX N-acetyl-6-O-phosphono-alpha-D-mannosamine PDB ? 3 BMX 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannose PDB ? 4 BMX 2-acetamido-2-deoxy-6-O-phosphono-D-mannose PDB ? 5 BMX 2-acetamido-2-deoxy-6-O-phosphono-mannose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BMX C1 C1 C 0 1 N N S 31.283 11.565 -7.881 -1.585 -0.466 -1.425 C1 BMX 1 BMX C2 C2 C 0 1 N N S 30.249 10.976 -8.788 -2.664 0.246 -0.604 C2 BMX 2 BMX C3 C3 C 0 1 N N R 29.219 10.215 -7.984 -2.161 1.637 -0.210 C3 BMX 3 BMX C4 C4 C 0 1 N N S 29.931 9.209 -7.086 -0.845 1.492 0.562 C4 BMX 4 BMX C5 C5 C 0 1 N N R 31.012 9.862 -6.245 0.164 0.733 -0.303 C5 BMX 5 BMX C6 C6 C 0 1 N N N 31.809 8.930 -5.294 1.461 0.531 0.483 C6 BMX 6 BMX C7 C7 C 0 1 N N N 30.776 9.959 -11.072 -3.840 -1.545 0.557 C7 BMX 7 BMX C8 C8 C 0 1 N N N 31.625 8.971 -11.811 -4.137 -2.345 1.799 C8 BMX 8 BMX N2 N2 N 0 1 N N N 30.960 10.084 -9.654 -2.953 -0.531 0.604 N2 BMX 9 BMX O1 O1 O 0 1 N Y N 30.754 12.587 -7.097 -1.342 0.265 -2.628 O1 BMX 10 BMX O3 O3 O 0 1 N N N 28.272 9.622 -8.821 -3.132 2.280 0.618 O3 BMX 11 BMX O4 O4 O 0 1 N N N 28.955 8.688 -6.253 -0.329 2.788 0.873 O4 BMX 12 BMX O5 O5 O 0 1 N N N 31.810 10.541 -7.114 -0.380 -0.540 -0.661 O5 BMX 13 BMX O6 O6 O 0 1 N N N 32.883 8.225 -5.884 2.441 -0.073 -0.362 O6 BMX 14 BMX O7 O7 O 0 1 N N N 29.946 10.628 -11.668 -4.399 -1.814 -0.485 O7 BMX 15 BMX P P P 0 1 N N N 34.173 7.674 -5.076 3.929 -0.431 0.138 P BMX 16 BMX O19 O19 O 0 1 N N N 35.182 7.327 -6.095 4.797 -0.975 -1.104 O19 BMX 17 BMX O17 O17 O 0 1 N N N 34.734 8.638 -4.113 4.569 0.783 0.692 O17 BMX 18 BMX O18 O18 O 0 1 N N N 33.736 6.511 -4.246 3.854 -1.566 1.278 O18 BMX 19 BMX H1 H1 H 0 1 N N N 32.084 12.029 -8.475 -1.921 -1.473 -1.672 H1 BMX 20 BMX HO1 HA H 0 1 N Y N 31.434 12.939 -6.534 -0.668 -0.129 -3.198 HO1 BMX 21 BMX H2 H2 H 0 1 N N N 29.712 11.752 -9.353 -3.571 0.341 -1.201 H2 BMX 22 BMX HN2 HB H 0 1 N N N 31.648 9.494 -9.232 -2.506 -0.316 1.437 HN2 BMX 23 BMX H3 H3 H 0 1 N N N 28.659 10.907 -7.338 -1.995 2.233 -1.107 H3 BMX 24 BMX H81 H81C H 0 1 N N N 31.361 8.986 -12.879 -3.450 -3.189 1.861 H81 BMX 25 BMX H82 H82C H 0 1 N N N 32.686 9.238 -11.692 -4.012 -1.711 2.678 H82 BMX 26 BMX H83 H83C H 0 1 N N N 31.452 7.963 -11.405 -5.162 -2.712 1.759 H83 BMX 27 BMX HO3 HC H 0 1 N Y N 27.636 9.150 -8.296 -2.878 3.168 0.905 HO3 BMX 28 BMX H4 H4 H 0 1 N N N 30.426 8.440 -7.697 -1.024 0.940 1.485 H4 BMX 29 BMX HO4 HD H 0 1 N Y N 29.346 8.050 -5.667 0.505 2.772 1.362 HO4 BMX 30 BMX H5 H5 H 0 1 N N N 30.526 10.529 -5.518 0.372 1.306 -1.207 H5 BMX 31 BMX H61 H61C H 0 1 N N N 32.227 9.556 -4.492 1.827 1.496 0.833 H61 BMX 32 BMX H62 H62C H 0 1 N N N 31.105 8.185 -4.896 1.269 -0.116 1.339 H62 BMX 33 BMX H18 H18 H 0 1 N N N 33.926 6.685 -3.332 3.446 -2.391 0.984 H18 BMX 34 BMX H19 H19 H 0 1 N N N 35.987 7.799 -5.918 5.706 -1.211 -0.876 H19 BMX 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BMX C1 O1 SING N N 1 BMX C1 C2 SING N N 2 BMX C1 O5 SING N N 3 BMX C2 N2 SING N N 4 BMX C2 C3 SING N N 5 BMX N2 C7 SING N N 6 BMX C7 O7 DOUB N N 7 BMX C7 C8 SING N N 8 BMX C3 O3 SING N N 9 BMX C3 C4 SING N N 10 BMX C4 O4 SING N N 11 BMX C4 C5 SING N N 12 BMX C5 C6 SING N N 13 BMX C5 O5 SING N N 14 BMX C6 O6 SING N N 15 BMX O6 P SING N N 16 BMX P O17 DOUB N N 17 BMX P O18 SING N N 18 BMX P O19 SING N N 19 BMX C1 H1 SING N N 20 BMX O1 HO1 SING N N 21 BMX C2 H2 SING N N 22 BMX N2 HN2 SING N N 23 BMX C3 H3 SING N N 24 BMX C8 H81 SING N N 25 BMX C8 H82 SING N N 26 BMX C8 H83 SING N N 27 BMX O3 HO3 SING N N 28 BMX C4 H4 SING N N 29 BMX O4 HO4 SING N N 30 BMX C5 H5 SING N N 31 BMX C6 H61 SING N N 32 BMX C6 H62 SING N N 33 BMX O18 H18 SING N N 34 BMX O19 H19 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BMX SMILES ACDLabs 12.01 "O=P(O)(O)OCC1OC(O)C(NC(=O)C)C(O)C1O" BMX SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@@H]1[C@@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O" BMX SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O" BMX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(=O)N[C@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)COP(=O)(O)O)O)O" BMX SMILES "OpenEye OEToolkits" 1.7.2 "CC(=O)NC1C(C(C(OC1O)COP(=O)(O)O)O)O" BMX InChI InChI 1.03 "InChI=1S/C8H16NO9P/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H2,14,15,16)/t4-,5+,6-,7-,8+/m1/s1" BMX InChIKey InChI 1.03 BRGMHAYQAZFZDJ-UOLFYFMNSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMX "SYSTEMATIC NAME" ACDLabs 12.01 "2-(acetylamino)-2-deoxy-6-O-phosphono-alpha-D-mannopyranose" BMX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,4R,5S,6S)-5-acetamido-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate" BMX "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-ManpNAc6PO3 # _pdbx_chem_comp_related.comp_id BMX _pdbx_chem_comp_related.related_comp_id BM3 _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 BMX C1 BM3 C1 "Carbohydrate core" 2 BMX C2 BM3 C2 "Carbohydrate core" 3 BMX C3 BM3 C3 "Carbohydrate core" 4 BMX C4 BM3 C4 "Carbohydrate core" 5 BMX C5 BM3 C5 "Carbohydrate core" 6 BMX C6 BM3 C6 "Carbohydrate core" 7 BMX C7 BM3 C7 "Carbohydrate core" 8 BMX C8 BM3 C8 "Carbohydrate core" 9 BMX N2 BM3 N2 "Carbohydrate core" 10 BMX O1 BM3 O1 "Carbohydrate core" 11 BMX O3 BM3 O3 "Carbohydrate core" 12 BMX O4 BM3 O4 "Carbohydrate core" 13 BMX O5 BM3 O5 "Carbohydrate core" 14 BMX O6 BM3 O6 "Carbohydrate core" 15 BMX O7 BM3 O7 "Carbohydrate core" 16 BMX H1 BM3 H1 "Carbohydrate core" 17 BMX H2 BM3 H2 "Carbohydrate core" 18 BMX H3 BM3 H3 "Carbohydrate core" 19 BMX H4 BM3 H4 "Carbohydrate core" 20 BMX H5 BM3 H5 "Carbohydrate core" 21 BMX H61 BM3 H61 "Carbohydrate core" 22 BMX H62 BM3 H62 "Carbohydrate core" 23 BMX H81 BM3 H81 "Carbohydrate core" 24 BMX H82 BM3 H82 "Carbohydrate core" 25 BMX H83 BM3 H83 "Carbohydrate core" 26 BMX HO1 BM3 HO1 "Carbohydrate core" 27 BMX HN2 BM3 HN2 "Carbohydrate core" 28 BMX HO3 BM3 HO3 "Carbohydrate core" 29 BMX HO4 BM3 HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BMX "CARBOHYDRATE ISOMER" D PDB ? BMX "CARBOHYDRATE RING" pyranose PDB ? BMX "CARBOHYDRATE ANOMER" alpha PDB ? BMX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BMX "Create component" 2011-05-10 EBI BMX "Modify descriptor" 2011-06-04 RCSB BMX "Other modification" 2020-07-03 RCSB BMX "Modify parent residue" 2020-07-17 RCSB BMX "Modify name" 2020-07-17 RCSB BMX "Modify synonyms" 2020-07-17 RCSB BMX "Modify linking type" 2020-07-17 RCSB BMX "Modify atom id" 2020-07-17 RCSB BMX "Modify component atom id" 2020-07-17 RCSB BMX "Modify leaving atom flag" 2020-07-17 RCSB ##