data_BOZ # _chem_comp.id BOZ _chem_comp.name "BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANONE ZINC" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 N8 O Zn" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.787 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BOZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XUJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BOZ C1 C1 C 0 1 Y N N 45.338 19.667 52.874 -5.749 0.857 0.158 C1 BOZ 1 BOZ C2 C2 C 0 1 Y N N 44.787 19.230 51.616 -5.017 2.031 0.278 C2 BOZ 2 BOZ C3 C3 C 0 1 Y N N 44.339 20.123 50.603 -3.654 2.002 0.321 C3 BOZ 3 BOZ C4 C4 C 0 1 Y N N 44.450 21.503 50.898 -2.979 0.776 0.245 C4 BOZ 4 BOZ C5 C5 C 0 1 Y N N 44.966 21.962 52.089 -3.723 -0.416 0.123 C5 BOZ 5 BOZ C6 C6 C 0 1 Y N N 45.416 21.076 53.081 -5.111 -0.362 0.087 C6 BOZ 6 BOZ C7 C7 C 0 1 N N N 45.697 18.749 53.897 -7.254 0.916 0.113 C7 BOZ 7 BOZ N1 N1 N 0 1 N N N 46.516 19.096 54.891 -7.764 -0.204 -0.690 N1 BOZ 8 BOZ N2 N2 N 0 1 N N N 45.206 17.512 53.921 -7.676 2.185 -0.494 N2 BOZ 9 BOZ N3 N3 N 0 1 Y N N 44.102 22.537 50.122 -1.679 0.435 0.260 N3 BOZ 10 BOZ N4 N4 N 0 1 Y N N 44.963 23.297 52.085 -2.804 -1.439 0.071 N4 BOZ 11 BOZ C8 C8 C 0 1 Y N N 44.427 23.572 50.879 -1.561 -0.867 0.159 C8 BOZ 12 BOZ "C1'" "C1'" C 0 1 Y N N 43.376 27.438 45.144 4.584 1.897 0.157 "C1'" BOZ 13 BOZ "C2'" "C2'" C 0 1 Y N N 43.166 26.072 44.799 5.234 0.678 0.012 "C2'" BOZ 14 BOZ "C3'" "C3'" C 0 1 Y N N 43.267 25.027 45.752 4.527 -0.487 -0.049 "C3'" BOZ 15 BOZ "C4'" "C4'" C 0 1 Y N N 43.591 25.361 47.058 3.128 -0.459 0.037 "C4'" BOZ 16 BOZ "C5'" "C5'" C 0 1 Y N N 43.805 26.646 47.440 2.469 0.779 0.185 "C5'" BOZ 17 BOZ "C6'" "C6'" C 0 1 Y N N 43.696 27.694 46.511 3.210 1.952 0.243 "C6'" BOZ 18 BOZ "C7'" "C7'" C 0 1 N N N 43.345 28.460 44.148 5.388 3.170 0.220 "C7'" BOZ 19 BOZ "N1'" "N1'" N 0 1 N N N 44.062 29.592 44.245 6.620 3.010 -0.564 "N1'" BOZ 20 BOZ "N2'" "N2'" N 0 1 N N N 42.602 28.371 43.036 4.596 4.278 -0.333 "N2'" BOZ 21 BOZ "N3'" "N3'" N 0 1 Y N N 43.732 24.532 48.102 2.182 -1.414 0.016 "N3'" BOZ 22 BOZ "N4'" "N4'" N 0 1 Y N N 44.093 26.642 48.745 1.124 0.493 0.240 "N4'" BOZ 23 BOZ "C8'" "C8'" C 0 1 Y N N 44.026 25.356 49.095 0.997 -0.867 0.129 "C8'" BOZ 24 BOZ C9 C9 C 0 1 N N N 44.243 24.924 50.446 -0.282 -1.605 0.141 C9 BOZ 25 BOZ O9 O9 O 0 1 N N N 44.426 25.802 51.311 -0.283 -2.821 0.136 O9 BOZ 26 BOZ ZN ZN ZN 2 0 N N N 43.314 22.673 48.263 2.495 -3.169 -0.147 ZN BOZ 27 BOZ H2 H2 H 0 1 N N N 44.710 18.168 51.433 -5.533 2.978 0.337 H2 BOZ 28 BOZ H3 H3 H 0 1 N N N 43.938 19.769 49.665 -3.095 2.922 0.414 H3 BOZ 29 BOZ H6 H6 H 0 1 N N N 45.823 21.463 54.004 -5.686 -1.272 -0.001 H6 BOZ 30 BOZ H7 H7 H 0 1 N N N 46.554 18.406 53.299 -7.651 0.847 1.125 H7 BOZ 31 BOZ HN11 HN11 H 0 0 N N N 46.645 18.317 55.505 -7.373 -0.100 -1.614 HN11 BOZ 32 BOZ HN12 HN12 H 0 0 N N N 47.400 19.372 54.513 -7.367 -1.045 -0.300 HN12 BOZ 33 BOZ HN21 HN21 H 0 0 N N N 45.574 17.022 54.712 -7.377 2.160 -1.457 HN21 BOZ 34 BOZ HN22 HN22 H 0 0 N N N 44.209 17.550 53.987 -8.685 2.181 -0.504 HN22 BOZ 35 BOZ HN4 HN4 H 0 1 N N N 45.277 23.929 52.793 -2.999 -2.385 -0.012 HN4 BOZ 36 BOZ "H2'" "H2'" H 0 1 N N N 42.922 25.824 43.777 6.312 0.652 -0.055 "H2'" BOZ 37 BOZ "H3'" "H3'" H 0 1 N N N 43.096 23.999 45.468 5.043 -1.428 -0.162 "H3'" BOZ 38 BOZ "H6'" "H6'" H 0 1 N N N 43.857 28.711 46.837 2.711 2.904 0.355 "H6'" BOZ 39 BOZ "H7'" "H7'" H 0 1 N N N 42.507 28.945 44.670 5.642 3.389 1.257 "H7'" BOZ 40 BOZ "H1'1" "H1'1" H 0 0 N N N 43.892 30.165 43.443 6.337 2.811 -1.512 "H1'1" BOZ 41 BOZ "H1'2" "H1'2" H 0 0 N N N 43.793 30.087 45.071 7.073 3.912 -0.580 "H1'2" BOZ 42 BOZ "H2'1" "H2'1" H 0 0 N N N 42.731 29.193 42.482 3.817 4.418 0.292 "H2'1" BOZ 43 BOZ "H2'2" "H2'2" H 0 0 N N N 42.883 27.568 42.511 5.171 5.104 -0.271 "H2'2" BOZ 44 BOZ "HN4'" "HN4'" H 0 0 N N N 44.310 27.425 49.327 0.402 1.134 0.339 "HN4'" BOZ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BOZ C1 C2 SING Y N 1 BOZ C1 C6 DOUB Y N 2 BOZ C1 C7 SING N N 3 BOZ C2 C3 DOUB Y N 4 BOZ C2 H2 SING N N 5 BOZ C3 C4 SING Y N 6 BOZ C3 H3 SING N N 7 BOZ C4 C5 DOUB Y N 8 BOZ C4 N3 SING Y N 9 BOZ C5 C6 SING Y N 10 BOZ C5 N4 SING Y N 11 BOZ C6 H6 SING N N 12 BOZ C7 N1 SING N N 13 BOZ C7 N2 SING N N 14 BOZ C7 H7 SING N N 15 BOZ N1 HN11 SING N N 16 BOZ N1 HN12 SING N N 17 BOZ N2 HN21 SING N N 18 BOZ N2 HN22 SING N N 19 BOZ N3 C8 DOUB Y N 20 BOZ N4 C8 SING Y N 21 BOZ N4 HN4 SING N N 22 BOZ C8 C9 SING N N 23 BOZ "C1'" "C2'" SING Y N 24 BOZ "C1'" "C6'" DOUB Y N 25 BOZ "C1'" "C7'" SING N N 26 BOZ "C2'" "C3'" DOUB Y N 27 BOZ "C2'" "H2'" SING N N 28 BOZ "C3'" "C4'" SING Y N 29 BOZ "C3'" "H3'" SING N N 30 BOZ "C4'" "C5'" DOUB Y N 31 BOZ "C4'" "N3'" SING Y N 32 BOZ "C5'" "C6'" SING Y N 33 BOZ "C5'" "N4'" SING Y N 34 BOZ "C6'" "H6'" SING N N 35 BOZ "C7'" "N1'" SING N N 36 BOZ "C7'" "N2'" SING N N 37 BOZ "C7'" "H7'" SING N N 38 BOZ "N1'" "H1'1" SING N N 39 BOZ "N1'" "H1'2" SING N N 40 BOZ "N2'" "H2'1" SING N N 41 BOZ "N2'" "H2'2" SING N N 42 BOZ "N3'" "C8'" DOUB Y N 43 BOZ "N3'" ZN SING N N 44 BOZ "N4'" "C8'" SING Y N 45 BOZ "N4'" "HN4'" SING N N 46 BOZ "C8'" C9 SING N N 47 BOZ C9 O9 DOUB N N 48 BOZ ZN N3 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BOZ InChI InChI 1.06 "InChI=1S/C17H18N8O.Zn/c18-14(19)7-1-3-9-11(5-7)24-16(22-9)13(26)17-23-10-4-2-8(15(20)21)6-12(10)25-17;/h1-6,14-15H,18-21H2,(H,22,24)(H,23,25);/q;+2" BOZ InChIKey InChI 1.06 ZZTKUHCUDLEGEN-UHFFFAOYSA-N BOZ SMILES_CANONICAL CACTVS 3.385 "[Zn++].NC(N)c1ccc2nc([nH]c2c1)C(=O)c3[nH]c4cc(ccc4n3)C(N)N" BOZ SMILES CACTVS 3.385 "[Zn++].NC(N)c1ccc2nc([nH]c2c1)C(=O)c3[nH]c4cc(ccc4n3)C(N)N" BOZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(N)N)NC3=[N]2[Zn+2][N]4=C(C3=O)Nc5c4ccc(c5)C(N)N" BOZ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(N)N)NC3=[N]2[Zn+2][N]4=C(C3=O)Nc5c4ccc(c5)C(N)N" # _pdbx_chem_comp_identifier.comp_id BOZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program OpenEye/Lexichem _pdbx_chem_comp_identifier.program_version 1.4 _pdbx_chem_comp_identifier.identifier "[5-(diaminomethyl)-2-[[6-(diaminomethyl)-1H-benzoimidazol-2-yl]carbonyl]-3H-benzoimidazol-1-yl]zinc" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BOZ "Create component" 1999-07-08 RCSB BOZ "Modify descriptor" 2023-09-23 RCSB #