data_BTD # _chem_comp.id BTD _chem_comp.name 5-BROMOTHIENYLDEOXYURIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 Br N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BTD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KI4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BTD "O5'" O5* O 0 1 N N N 17.544 93.923 44.130 0.705 -2.572 6.324 "O5'" BTD 1 BTD "C5'" C5* C 0 1 N N N 16.949 94.605 45.235 0.456 -1.166 6.374 "C5'" BTD 2 BTD "C4'" C4* C 0 1 N N R 17.641 95.850 45.389 1.158 -0.481 5.200 "C4'" BTD 3 BTD "O4'" O4* O 0 1 N N N 19.002 95.472 45.705 0.611 -0.938 3.944 "O4'" BTD 4 BTD "C1'" C1* C 0 1 N N R 19.871 95.986 44.741 0.923 0.063 2.961 "C1'" BTD 5 BTD N1 N1 N 0 1 N N N 20.795 94.802 44.536 -0.158 0.149 1.977 N1 BTD 6 BTD C6 C6 C 0 1 N N N 20.374 93.475 44.392 0.120 -0.066 0.656 C6 BTD 7 BTD C2 C2 C 0 1 N N N 22.129 95.150 44.555 -1.403 0.433 2.391 C2 BTD 8 BTD O2 O2 O 0 1 N N N 22.519 96.311 44.679 -1.604 0.618 3.576 O2 BTD 9 BTD N3 N3 N 0 1 N N N 23.006 94.158 44.428 -2.433 0.529 1.532 N3 BTD 10 BTD C4 C4 C 0 1 N N N 22.674 92.849 44.243 -2.239 0.329 0.211 C4 BTD 11 BTD O4 O4 O 0 1 N N N 23.645 92.135 44.106 -3.168 0.410 -0.571 O4 BTD 12 BTD C5 C5 C 0 1 N N N 21.249 92.461 44.222 -0.885 0.012 -0.263 C5 BTD 13 BTD C55 C55 C 0 1 Y N N 20.853 91.109 44.069 -0.618 -0.215 -1.699 C55 BTD 14 BTD C44 C44 C 0 1 Y N N 19.678 90.551 44.436 -1.144 -1.164 -2.534 C44 BTD 15 BTD C33 C33 C 0 1 Y N N 19.592 89.215 44.134 -0.744 -1.180 -3.854 C33 BTD 16 BTD C22 C22 C 0 1 Y N N 20.686 88.658 43.486 0.162 -0.264 -4.281 C22 BTD 17 BTD S11 S11 S 0 1 Y N N 21.891 89.826 43.226 0.477 0.671 -2.794 S11 BTD 18 BTD BR BR BR 0 0 N N N 21.308 87.024 42.795 0.902 -0.039 -6.006 BR BTD 19 BTD "C2'" C2* C 0 1 N N N 18.956 96.320 43.660 1.066 1.405 3.705 "C2'" BTD 20 BTD "C3'" C3* C 0 1 N N S 17.678 96.760 44.274 0.860 1.039 5.197 "C3'" BTD 21 BTD "O3'" O3* O 0 1 N N N 17.862 97.933 44.922 1.781 1.747 6.028 "O3'" BTD 22 BTD "HO5'" *HO5 H 0 0 N N N 17.085 93.097 44.027 0.246 -2.964 7.079 "HO5'" BTD 23 BTD "H5'1" 1H5* H 0 0 N N N 15.846 94.729 45.128 -0.616 -0.985 6.311 "H5'1" BTD 24 BTD "H5'2" 2H5* H 0 0 N N N 16.935 93.995 46.168 0.838 -0.762 7.311 "H5'2" BTD 25 BTD "H4'" H4* H 0 1 N N N 17.080 96.428 46.159 2.232 -0.661 5.238 "H4'" BTD 26 BTD "H1'" H1* H 0 1 N N N 20.500 96.887 44.924 1.859 -0.185 2.462 "H1'" BTD 27 BTD H6 H6 H 0 1 N N N 19.302 93.216 44.413 1.127 -0.297 0.342 H6 BTD 28 BTD HN3 HN3 H 0 1 N N N 23.991 94.416 44.475 -3.320 0.740 1.863 HN3 BTD 29 BTD H44 H44 H 0 1 N N N 18.875 91.124 44.929 -1.864 -1.881 -2.168 H44 BTD 30 BTD H33 H33 H 0 1 N N N 18.697 88.624 44.396 -1.144 -1.914 -4.538 H33 BTD 31 BTD "H2'1" 1H2* H 0 0 N N N 19.377 97.069 42.950 2.062 1.822 3.552 "H2'1" BTD 32 BTD "H2'2" 2H2* H 0 0 N N N 18.823 95.487 42.930 0.302 2.109 3.374 "H2'2" BTD 33 BTD "H3'" H3* H 0 1 N N N 16.835 96.813 43.545 -0.167 1.232 5.506 "H3'" BTD 34 BTD "HO3'" *HO3 H 0 0 N N N 17.886 98.533 44.186 1.599 2.689 5.909 "HO3'" BTD 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BTD "O5'" "C5'" SING N N 1 BTD "O5'" "HO5'" SING N N 2 BTD "C5'" "C4'" SING N N 3 BTD "C5'" "H5'1" SING N N 4 BTD "C5'" "H5'2" SING N N 5 BTD "C4'" "O4'" SING N N 6 BTD "C4'" "C3'" SING N N 7 BTD "C4'" "H4'" SING N N 8 BTD "O4'" "C1'" SING N N 9 BTD "C1'" N1 SING N N 10 BTD "C1'" "C2'" SING N N 11 BTD "C1'" "H1'" SING N N 12 BTD N1 C6 SING N N 13 BTD N1 C2 SING N N 14 BTD C6 C5 DOUB N N 15 BTD C6 H6 SING N N 16 BTD C2 O2 DOUB N N 17 BTD C2 N3 SING N N 18 BTD N3 C4 SING N N 19 BTD N3 HN3 SING N N 20 BTD C4 O4 DOUB N N 21 BTD C4 C5 SING N N 22 BTD C5 C55 SING N N 23 BTD C55 C44 DOUB Y N 24 BTD C55 S11 SING Y N 25 BTD C44 C33 SING Y N 26 BTD C44 H44 SING N N 27 BTD C33 C22 DOUB Y N 28 BTD C33 H33 SING N N 29 BTD C22 S11 SING Y N 30 BTD C22 BR SING N N 31 BTD "C2'" "C3'" SING N N 32 BTD "C2'" "H2'1" SING N N 33 BTD "C2'" "H2'2" SING N N 34 BTD "C3'" "O3'" SING N N 35 BTD "C3'" "H3'" SING N N 36 BTD "O3'" "HO3'" SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BTD SMILES ACDLabs 10.04 "Brc3sc(C=1C(=O)NC(=O)N(C=1)C2OC(CO)C(O)C2)cc3" BTD SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C(=O)NC2=O)c3sc(Br)cc3" BTD SMILES CACTVS 3.341 "OC[CH]1O[CH](C[CH]1O)N2C=C(C(=O)NC2=O)c3sc(Br)cc3" BTD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(sc1C2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)CO)O)Br" BTD SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(sc1C2=CN(C(=O)NC2=O)C3CC(C(O3)CO)O)Br" BTD InChI InChI 1.03 "InChI=1S/C13H13BrN2O5S/c14-10-2-1-9(22-10)6-4-16(13(20)15-12(6)19)11-3-7(18)8(5-17)21-11/h1-2,4,7-8,11,17-18H,3,5H2,(H,15,19,20)/t7-,8+,11+/m0/s1" BTD InChIKey InChI 1.03 IGUZFFOBAZCVRK-VAOFZXAKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BTD "SYSTEMATIC NAME" ACDLabs 10.04 "5-(5-bromothiophen-2-yl)-2'-deoxyuridine" BTD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-(5-bromothiophen-2-yl)-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BTD "Create component" 1999-07-08 RCSB BTD "Modify descriptor" 2011-06-04 RCSB #