data_BV6 # _chem_comp.id BV6 _chem_comp.name "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)-3,5-bis(oxidanyl)oxan-4-yl]sulfanyl-oxane-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N O12 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-10 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.456 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BV6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6JG2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BV6 C1 C1 C 0 1 Y N N 28.344 32.122 35.919 3.289 -0.333 1.041 C1 BV6 1 BV6 C2 C2 C 0 1 Y N N 27.687 33.236 35.329 4.069 -0.862 2.059 C2 BV6 2 BV6 C3 C3 C 0 1 Y N N 28.474 34.320 35.039 5.370 -1.249 1.802 C3 BV6 3 BV6 C4 C4 C 0 1 Y N N 29.854 34.229 35.340 5.895 -1.110 0.530 C4 BV6 4 BV6 C5 C5 C 0 1 Y N N 30.491 33.115 35.914 5.120 -0.583 -0.486 C5 BV6 5 BV6 O5 O1 O -1 1 N N N 31.884 35.196 35.128 7.973 -1.989 1.152 O5 BV6 6 BV6 C6 C6 C 0 1 Y N N 29.710 32.026 36.215 3.819 -0.195 -0.234 C6 BV6 7 BV6 O6 O2 O 0 1 N N N 30.149 36.364 34.693 7.753 -1.403 -0.862 O6 BV6 8 BV6 C1A C7 C 0 1 N N S 25.239 25.776 35.933 -3.353 0.203 0.336 C1A BV6 9 BV6 C2A C8 C 0 1 N N R 24.409 24.815 36.827 -4.758 0.361 0.924 C2A BV6 10 BV6 C3A C9 C 0 1 N N S 23.711 23.666 36.100 -5.370 -1.026 1.144 C3A BV6 11 BV6 C4A C10 C 0 1 N N S 23.121 24.157 34.781 -5.378 -1.785 -0.186 C4A BV6 12 BV6 C5A C11 C 0 1 N N R 24.268 24.596 33.882 -3.949 -1.860 -0.731 C5A BV6 13 BV6 C6A C12 C 0 1 N N N 23.903 25.221 32.532 -3.958 -2.565 -2.089 C6A BV6 14 BV6 O2A O3 O 0 1 N N N 25.143 24.293 37.936 -4.678 1.051 2.173 O2A BV6 15 BV6 O4A O4 O 0 1 N N N 22.462 23.030 34.193 -5.880 -3.107 0.021 O4A BV6 16 BV6 O5A O5 O 0 1 N N N 25.194 25.489 34.534 -3.429 -0.538 -0.883 O5A BV6 17 BV6 O6A O6 O 0 1 N N N 23.104 26.415 32.670 -2.614 -2.739 -2.544 O6A BV6 18 BV6 C1B C13 C 0 1 N N S 26.854 30.512 35.126 1.264 0.579 0.194 C1B BV6 19 BV6 C2B C14 C 0 1 N N R 26.590 29.005 35.372 -0.182 0.827 0.631 C2B BV6 20 BV6 C3B C15 C 0 1 N N S 25.342 28.447 34.649 -0.957 1.457 -0.530 C3B BV6 21 BV6 C4B C16 C 0 1 N N S 24.617 29.476 33.678 -0.251 2.746 -0.961 C4B BV6 22 BV6 C5B C17 C 0 1 N N S 24.654 31.012 33.988 1.198 2.424 -1.337 C5B BV6 23 BV6 C6B C18 C 0 1 N N N 24.713 32.006 32.815 1.215 1.465 -2.528 C6B BV6 24 BV6 O1B O7 O 0 1 N N N 27.615 31.022 36.212 2.008 0.043 1.290 O1B BV6 25 BV6 O2B O8 O 0 1 N N N 26.823 28.441 36.709 -0.197 1.713 1.752 O2B BV6 26 BV6 O4B O9 O 0 1 N N N 23.328 28.993 33.201 -0.268 3.683 0.118 O4B BV6 27 BV6 O5B O10 O 0 1 N N N 25.796 31.437 34.754 1.852 1.812 -0.223 O5B BV6 28 BV6 O6B O11 O 0 1 N N N 24.976 33.346 33.298 2.563 1.256 -2.952 O6B BV6 29 BV6 N4 N1 N 1 1 N N N 30.666 35.314 35.045 7.289 -1.525 0.257 N4 BV6 30 BV6 S1A S1 S 0 1 N N N 24.450 27.376 35.814 -2.647 1.841 0.006 S1A BV6 31 BV6 O3A O12 O 0 1 N N N 22.736 23.010 36.956 -6.708 -0.887 1.624 O3A BV6 32 BV6 H1 H1 H 0 1 N N N 26.627 33.229 35.121 3.660 -0.970 3.053 H1 BV6 33 BV6 H2 H2 H 0 1 N N N 28.056 35.212 34.596 5.977 -1.661 2.594 H2 BV6 34 BV6 H3 H3 H 0 1 N N N 31.553 33.115 36.111 5.533 -0.475 -1.479 H3 BV6 35 BV6 H4 H4 H 0 1 N N N 30.130 31.136 36.660 3.214 0.216 -1.029 H4 BV6 36 BV6 H5 H5 H 0 1 N N N 26.258 25.914 36.322 -2.720 -0.330 1.046 H5 BV6 37 BV6 H6 H6 H 0 1 N N N 23.601 25.433 37.246 -5.380 0.928 0.232 H6 BV6 38 BV6 H7 H7 H 0 1 N N N 24.487 22.928 35.848 -4.775 -1.576 1.873 H7 BV6 39 BV6 H8 H8 H 0 1 N N N 22.427 24.992 34.957 -6.013 -1.261 -0.901 H8 BV6 40 BV6 H9 H9 H 0 1 N N N 24.828 23.680 33.643 -3.324 -2.420 -0.036 H9 BV6 41 BV6 H10 H10 H 0 1 N N N 24.831 25.478 32.000 -4.437 -3.539 -1.991 H10 BV6 42 BV6 H11 H11 H 0 1 N N N 23.336 24.484 31.944 -4.509 -1.960 -2.809 H11 BV6 43 BV6 H12 H12 H 0 1 N N N 24.584 23.715 38.442 -4.294 1.936 2.109 H12 BV6 44 BV6 H13 H13 H 0 1 N N N 22.075 23.286 33.364 -6.781 -3.135 0.371 H13 BV6 45 BV6 H14 H14 H 0 1 N N N 22.904 26.764 31.809 -2.543 -3.180 -3.402 H14 BV6 46 BV6 H15 H15 H 0 1 N N N 27.543 30.519 34.268 1.277 -0.129 -0.635 H15 BV6 47 BV6 H16 H16 H 0 1 N N N 27.401 28.546 34.788 -0.646 -0.120 0.908 H16 BV6 48 BV6 H17 H17 H 0 1 N N N 25.762 27.706 33.953 -0.988 0.761 -1.368 H17 BV6 49 BV6 H18 H18 H 0 1 N N N 25.247 29.413 32.778 -0.765 3.172 -1.823 H18 BV6 50 BV6 H19 H19 H 0 1 N N N 23.745 31.243 34.563 1.717 3.344 -1.603 H19 BV6 51 BV6 H20 H20 H 0 1 N N N 25.516 31.705 32.126 0.775 0.512 -2.234 H20 BV6 52 BV6 H21 H21 H 0 1 N N N 23.750 31.995 32.283 0.638 1.893 -3.348 H21 BV6 53 BV6 H22 H22 H 0 1 N N N 26.618 27.513 36.702 0.280 1.379 2.524 H22 BV6 54 BV6 H23 H23 H 0 1 N N N 22.939 29.642 32.627 0.163 4.524 -0.086 H23 BV6 55 BV6 H24 H24 H 0 1 N N N 25.009 33.947 32.563 2.650 0.656 -3.706 H24 BV6 56 BV6 H25 H25 H 0 1 N N N 22.320 22.302 36.478 -6.779 -0.409 2.461 H25 BV6 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BV6 C1 C2 DOUB Y N 1 BV6 C1 C6 SING Y N 2 BV6 C1 O1B SING N N 3 BV6 C2 C3 SING Y N 4 BV6 C3 C4 DOUB Y N 5 BV6 C4 C5 SING Y N 6 BV6 C4 N4 SING N N 7 BV6 C5 C6 DOUB Y N 8 BV6 O5 N4 SING N N 9 BV6 O6 N4 DOUB N N 10 BV6 C1A C2A SING N N 11 BV6 C1A O5A SING N N 12 BV6 C1A S1A SING N N 13 BV6 C2A C3A SING N N 14 BV6 C2A O2A SING N N 15 BV6 C3A C4A SING N N 16 BV6 C3A O3A SING N N 17 BV6 C4A C5A SING N N 18 BV6 C4A O4A SING N N 19 BV6 C5A C6A SING N N 20 BV6 C5A O5A SING N N 21 BV6 C6A O6A SING N N 22 BV6 C1B C2B SING N N 23 BV6 C1B O1B SING N N 24 BV6 C1B O5B SING N N 25 BV6 C2B C3B SING N N 26 BV6 C2B O2B SING N N 27 BV6 C3B C4B SING N N 28 BV6 C3B S1A SING N N 29 BV6 C4B C5B SING N N 30 BV6 C4B O4B SING N N 31 BV6 C5B C6B SING N N 32 BV6 C5B O5B SING N N 33 BV6 C6B O6B SING N N 34 BV6 C2 H1 SING N N 35 BV6 C3 H2 SING N N 36 BV6 C5 H3 SING N N 37 BV6 C6 H4 SING N N 38 BV6 C1A H5 SING N N 39 BV6 C2A H6 SING N N 40 BV6 C3A H7 SING N N 41 BV6 C4A H8 SING N N 42 BV6 C5A H9 SING N N 43 BV6 C6A H10 SING N N 44 BV6 C6A H11 SING N N 45 BV6 O2A H12 SING N N 46 BV6 O4A H13 SING N N 47 BV6 O6A H14 SING N N 48 BV6 C1B H15 SING N N 49 BV6 C2B H16 SING N N 50 BV6 C3B H17 SING N N 51 BV6 C4B H18 SING N N 52 BV6 C5B H19 SING N N 53 BV6 C6B H20 SING N N 54 BV6 C6B H21 SING N N 55 BV6 O2B H22 SING N N 56 BV6 O4B H23 SING N N 57 BV6 O6B H24 SING N N 58 BV6 O3A H25 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BV6 InChI InChI 1.03 "InChI=1S/C18H25NO12S/c20-5-9-11(22)13(24)14(25)18(31-9)32-16-12(23)10(6-21)30-17(15(16)26)29-8-3-1-7(2-4-8)19(27)28/h1-4,9-18,20-26H,5-6H2/t9-,10+,11-,12+,13+,14-,15+,16+,17-,18+/m1/s1" BV6 InChIKey InChI 1.03 JHLJVHIWBCGKQZ-KZPLUMROSA-N BV6 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@@H](O)[C@@H](S[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]1O" BV6 SMILES CACTVS 3.385 "OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]1O" BV6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@H]([C@H]([C@H]([C@@H](O2)CO)O)S[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O" BV6 SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)SC3C(C(C(C(O3)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id BV6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)-3,5-bis(oxidanyl)oxan-4-yl]sulfanyl-oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BV6 "Create component" 2019-03-10 PDBJ BV6 "Initial release" 2020-08-19 RCSB ##