data_BY6 # _chem_comp.id BY6 _chem_comp.name "[(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)-2-[(1R,2S)-2-[[6-amino-2-[(1S)-3-amino-1-[(2,3-diamino-3-oxopropyl)amino]-3-oxopropyl]-5-methylpyrimidine-4-carbonyl]amino]-3-[[(2S,3R,4R)-5-[[(2R,3S)-1-[2-[4-[4-[3-[4-(3-aminopropylamino)butylamino]propylcarbamoyl]-1,3-thiazol-2-yl]-1,3-thiazol-2-yl]ethylamino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-hydroxy-4-methyl-5-oxopentan-2-yl]amino]-1-(3H-imidazol-4-yl)-3-oxopropoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl] carbamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C60 H96 N20 O21 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Bleomycin A6" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-02-13 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1497.656 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BY6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZHP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BY6 NA NA N 0 1 N N N 14.329 63.673 17.362 6.201 -10.834 0.855 NA BY6 1 BY6 C2 C2 C 0 1 N N S 13.827 61.280 18.218 7.766 -8.920 0.890 C2 BY6 2 BY6 C1 C1 C 0 1 N N N 14.750 62.607 18.027 6.924 -9.935 0.160 C1 BY6 3 BY6 O1 O1 O 0 1 N N N 15.881 62.594 18.483 6.898 -9.942 -1.052 O1 BY6 4 BY6 NC NC N 0 1 N N N 15.830 59.798 17.537 7.712 -6.727 1.979 NC BY6 5 BY6 C3 C3 C 0 1 N N N 14.795 60.117 18.551 6.877 -7.773 1.374 C3 BY6 6 BY6 NB NB N 0 1 N N N 13.127 60.977 16.952 8.794 -8.393 -0.018 NB BY6 7 BY6 ND ND N 0 1 N N N 17.785 58.476 20.854 5.058 -4.415 5.401 ND BY6 8 BY6 C5 C5 C 0 1 N N N 16.761 57.711 18.623 6.390 -5.723 3.779 C5 BY6 9 BY6 C4 C4 C 0 1 N N N 17.844 58.432 19.447 5.535 -4.538 4.147 C4 BY6 10 BY6 O4 O4 O 0 1 N N N 18.726 58.953 18.798 5.276 -3.696 3.314 O4 BY6 11 BY6 C8 C8 C 0 1 Y N N 14.176 55.703 16.009 9.749 -3.259 2.715 C8 BY6 12 BY6 C9 C9 C 0 1 Y N N 13.431 56.340 14.992 9.262 -2.099 2.106 C9 BY6 13 BY6 C10 C10 C 0 1 Y N N 13.751 57.766 14.783 7.974 -2.123 1.582 C10 BY6 14 BY6 NG NG N 0 1 Y N N 14.702 58.291 15.614 7.258 -3.243 1.680 NG BY6 15 BY6 C7 C7 C 0 1 Y N N 15.364 57.720 16.544 7.753 -4.314 2.261 C7 BY6 16 BY6 NE NE N 0 1 Y N N 15.137 56.447 16.758 8.969 -4.333 2.770 NE BY6 17 BY6 C6 C6 C 0 1 N N S 16.367 58.488 17.321 6.905 -5.557 2.348 C6 BY6 18 BY6 NF NF N 0 1 N N N 14.001 54.413 16.268 11.028 -3.290 3.247 NF BY6 19 BY6 CA CA C 0 1 N N N 12.411 55.592 14.189 10.109 -0.855 2.019 CA BY6 20 BY6 C12 C12 C 0 1 N N N 13.164 58.696 13.751 7.405 -0.919 0.925 C12 BY6 21 BY6 O12 O12 O 0 1 N N N 12.288 58.272 12.943 8.111 0.044 0.705 O12 BY6 22 BY6 NH NH N 0 1 N N N 13.624 59.851 13.751 6.104 -0.896 0.573 NH BY6 23 BY6 C13 C13 C 0 1 N N S 13.068 60.781 12.650 5.542 0.292 -0.076 C13 BY6 24 BY6 C30 C30 C 0 1 N N N 13.984 60.765 11.474 6.274 0.553 -1.367 C30 BY6 25 BY6 O30 O30 O 0 1 N N N 13.494 61.491 10.574 7.472 0.740 -1.357 O30 BY6 26 BY6 C14 C14 C 0 1 N N R 13.173 62.326 13.278 5.696 1.500 0.851 C14 BY6 27 BY6 C27 C27 C 0 1 Y N N 14.536 62.740 13.821 4.735 1.373 2.005 C27 BY6 28 BY6 OH1 OH1 O 0 1 N N N 12.267 62.379 14.370 5.412 2.697 0.124 OH1 BY6 29 BY6 NJ NJ N 0 1 Y N N 15.358 62.097 14.675 4.299 0.225 2.544 NJ BY6 30 BY6 C28 C28 C 0 1 Y N N 15.251 63.887 13.546 4.169 2.392 2.679 C28 BY6 31 BY6 C29 C29 C 0 1 Y N N 16.481 62.728 14.944 3.479 0.495 3.524 C29 BY6 32 BY6 NI NI N 0 1 Y N N 16.365 63.847 14.209 3.371 1.836 3.641 NI BY6 33 BY6 NK NK N 0 1 N N N 15.078 60.135 11.413 5.598 0.577 -2.532 NK BY6 34 BY6 C34 C34 C 0 1 N N S 17.489 61.907 11.505 3.376 -0.734 -3.733 C34 BY6 35 BY6 C36 C36 C 0 1 N N N 18.754 62.019 12.251 2.199 -0.667 -4.673 C36 BY6 36 BY6 O36 O36 O 0 1 N N N 19.605 62.857 12.123 2.369 -0.374 -5.837 O36 BY6 37 BY6 OH2 OH2 O 0 1 N N N 18.178 60.651 9.583 4.862 -1.582 -5.439 OH2 BY6 38 BY6 C31 C31 C 0 1 N N R 15.959 60.224 10.215 5.851 -0.448 -3.548 C31 BY6 39 BY6 CB CB C 0 1 N N N 15.880 58.815 9.465 7.126 -0.098 -4.318 CB BY6 40 BY6 C33 C33 C 0 1 N N S 17.357 60.553 10.746 4.669 -0.507 -4.518 C33 BY6 41 BY6 CC CC C 0 1 N N N 17.476 63.172 10.494 3.418 -2.111 -3.067 CC BY6 42 BY6 NL NL N 0 1 N N N 18.940 61.047 13.218 0.958 -0.932 -4.219 NL BY6 43 BY6 C37 C37 C 0 1 N N S 20.145 60.974 14.060 -0.168 -0.989 -5.155 C37 BY6 44 BY6 C40 C40 C 0 1 N N N 21.318 60.475 13.147 -1.454 -0.748 -4.408 C40 BY6 45 BY6 O40 O40 O 0 1 N N N 21.196 59.674 12.266 -1.444 -0.649 -3.199 O40 BY6 46 BY6 C38 C38 C 0 1 N N R 19.883 59.780 15.212 -0.212 -2.368 -5.816 C38 BY6 47 BY6 OH3 OH3 O 0 1 N N N 18.749 60.147 15.748 -0.477 -3.363 -4.825 OH3 BY6 48 BY6 CD CD C 0 1 N N N 21.063 59.691 16.129 1.134 -2.657 -6.483 CD BY6 49 BY6 NM NM N 0 1 N N N 22.452 61.109 13.511 -2.616 -0.643 -5.083 NM BY6 50 BY6 C42 C42 C 0 1 N N N 24.514 59.943 13.761 -5.036 -0.416 -5.348 C42 BY6 51 BY6 C49 C49 C 0 1 N N N 32.638 61.546 11.568 -11.620 3.303 -1.391 C49 BY6 52 BY6 O49 O49 O 0 1 N N N 33.309 62.591 11.726 -12.022 4.415 -1.107 O49 BY6 53 BY6 C43 C43 C 0 1 Y N N 25.946 59.738 13.127 -6.336 -0.289 -4.596 C43 BY6 54 BY6 C41 C41 C 0 1 N N N 23.762 60.871 12.816 -3.879 -0.519 -4.352 C41 BY6 55 BY6 S43 S43 S 0 1 Y N N 26.363 58.156 12.378 -7.307 -1.605 -4.101 S43 BY6 56 BY6 C44 C44 C 0 1 Y N N 27.969 58.774 12.041 -8.470 -0.495 -3.381 C44 BY6 57 BY6 C45 C45 C 0 1 Y N N 27.977 60.073 12.513 -8.020 0.763 -3.579 C45 BY6 58 BY6 NN NN N 0 1 Y N N 26.844 60.574 13.108 -6.867 0.826 -4.232 NN BY6 59 BY6 C47 C47 C 0 1 Y N N 30.651 62.727 12.559 -9.601 4.196 -2.509 C47 BY6 60 BY6 C48 C48 C 0 1 Y N N 31.204 61.574 11.997 -10.354 3.142 -2.126 C48 BY6 61 BY6 NO NO N 0 1 Y N N 30.316 60.499 11.897 -9.871 1.952 -2.460 NO BY6 62 BY6 C46 C46 C 0 1 Y N N 29.135 60.916 12.417 -8.744 1.962 -3.107 C46 BY6 63 BY6 S46 S46 S 0 1 Y N N 28.999 62.568 13.017 -8.215 3.625 -3.332 S46 BY6 64 BY6 NP NP N 0 1 N N N 33.076 60.449 11.082 -12.334 2.217 -1.033 NP BY6 65 BY6 O59 O59 O 0 1 N N N 9.389 65.972 14.963 9.607 3.092 1.511 O59 BY6 66 BY6 O58 O58 O 0 1 N N N 11.285 63.435 16.971 6.281 1.802 2.355 O58 BY6 67 BY6 C61 C61 C 0 1 N N N 12.196 66.787 14.234 9.287 1.315 -0.703 C61 BY6 68 BY6 O61 O61 O 0 1 N N N 13.382 66.673 13.452 8.848 0.868 -1.987 O61 BY6 69 BY6 O56 O56 O 0 1 N N N 9.793 61.697 15.087 5.703 4.538 2.217 O56 BY6 70 BY6 C60 C60 C 0 1 N N S 11.837 65.375 14.705 8.093 1.859 0.085 C60 BY6 71 BY6 O62 O62 O 0 1 N N N 11.537 64.518 13.544 7.623 3.059 -0.531 O62 BY6 72 BY6 C63 C63 C 0 1 N N R 11.142 63.038 13.856 6.487 3.639 0.113 C63 BY6 73 BY6 C57 C57 C 0 1 N N S 10.017 63.147 14.841 6.853 4.011 1.552 C57 BY6 74 BY6 C58 C58 C 0 1 N N S 10.285 63.916 16.111 7.340 2.759 2.287 C58 BY6 75 BY6 C59 C59 C 0 1 N N S 10.569 65.408 15.677 8.524 2.160 1.523 C59 BY6 76 BY6 C69 C69 C 0 1 N N S 8.614 59.849 15.671 4.502 6.468 3.040 C69 BY6 77 BY6 C68 C68 C 0 1 N N S 9.583 58.881 14.864 3.154 5.770 2.838 C68 BY6 78 BY6 C67 C67 C 0 1 N N R 9.012 58.571 13.445 2.682 6.001 1.399 C67 BY6 79 BY6 C65 C65 C 0 1 N N R 9.087 59.977 12.727 3.753 5.488 0.431 C65 BY6 80 BY6 O64 O64 O 0 1 N N N 8.231 60.963 13.544 4.989 6.156 0.694 O64 BY6 81 BY6 C64 C64 C 0 1 N N R 8.521 61.196 14.933 5.502 5.938 2.009 C64 BY6 82 BY6 O68 O68 O 0 1 N N N 9.647 57.629 15.637 2.178 6.320 3.762 O68 BY6 83 BY6 O67 O67 O 0 1 N N N 9.813 57.679 12.675 1.461 5.293 1.177 O67 BY6 84 BY6 O69 O69 O 0 1 N N N 7.265 59.191 15.652 4.341 7.878 2.868 O69 BY6 85 BY6 NQ NQ N 0 1 N N N 10.472 56.313 17.240 1.203 6.190 5.878 NQ BY6 86 BY6 C70 C70 C 0 1 N N N 10.568 57.537 16.680 2.152 5.801 5.004 C70 BY6 87 BY6 O70 O70 O 0 1 N N N 11.356 58.422 17.029 2.986 4.982 5.338 O70 BY6 88 BY6 O66 O66 O 0 1 N N N 8.701 61.262 10.737 4.257 5.189 -1.913 O66 BY6 89 BY6 C66 C66 C 0 1 N N N 8.563 59.913 11.287 3.316 5.769 -1.008 C66 BY6 90 BY6 HNA HNA H 0 1 N N N 13.402 63.481 17.040 6.221 -10.828 1.825 HNA BY6 91 BY6 HNAA HNAA H 0 0 N N N 14.845 64.516 17.210 5.655 -11.485 0.386 HNAA BY6 92 BY6 H2 H2 H 0 1 N N N 13.078 61.426 19.010 8.246 -9.394 1.746 H2 BY6 93 BY6 HNC HNC H 0 1 N N N 15.419 60.054 16.662 8.218 -7.084 2.776 HNC BY6 94 BY6 H3 H3 H 0 1 N N N 15.322 60.390 19.477 6.329 -7.356 0.528 H3 BY6 95 BY6 H3A H3A H 0 1 N N N 14.163 59.219 18.616 6.171 -8.148 2.115 H3A BY6 96 BY6 HNB HNB H 0 1 N N N 12.144 60.909 17.122 9.434 -9.120 -0.301 HNB BY6 97 BY6 HNBA HNBA H 0 0 N N N 13.301 61.708 16.292 8.374 -7.948 -0.821 HNBA BY6 98 BY6 HND HND H 0 1 N N N 16.962 57.980 21.133 5.266 -5.088 6.068 HND BY6 99 BY6 HNDA HNDA H 0 0 N N N 18.444 58.921 21.461 4.508 -3.652 5.638 HNDA BY6 100 BY6 H5 H5 H 0 1 N N N 17.147 56.723 18.333 7.236 -5.788 4.464 H5 BY6 101 BY6 H5A H5A H 0 1 N N N 15.861 57.637 19.251 5.797 -6.635 3.848 H5A BY6 102 BY6 H6 H6 H 0 1 N N N 17.316 58.606 16.777 6.060 -5.468 1.666 H6 BY6 103 BY6 HNF HNF H 0 1 N N N 13.957 53.903 15.409 11.592 -2.503 3.199 HNF BY6 104 BY6 HNFA HNFA H 0 0 N N N 14.766 54.076 16.816 11.358 -4.099 3.668 HNFA BY6 105 BY6 HA HA H 0 1 N N N 11.520 55.409 14.807 10.584 -0.807 1.039 HA BY6 106 BY6 HAA HAA H 0 1 N N N 12.130 56.187 13.308 9.481 0.023 2.162 HAA BY6 107 BY6 HAB HAB H 0 1 N N N 12.835 54.631 13.863 10.876 -0.884 2.794 HAB BY6 108 BY6 HNH HNH H 0 1 N N N 14.305 60.156 14.416 5.540 -1.665 0.748 HNH BY6 109 BY6 H13 H13 H 0 1 N N N 12.053 60.476 12.357 4.485 0.126 -0.285 H13 BY6 110 BY6 H14 H14 H 0 1 N N N 12.958 63.011 12.444 6.717 1.539 1.230 H14 BY6 111 BY6 H28 H28 H 0 1 N N N 14.936 64.684 12.889 4.317 3.446 2.496 H28 BY6 112 BY6 H29 H29 H 0 1 N N N 17.290 62.424 15.591 2.974 -0.234 4.140 H29 BY6 113 BY6 HNI HNI H 0 1 N N N 17.058 64.567 14.177 2.830 2.315 4.288 HNI BY6 114 BY6 HNK HNK H 0 1 N N N 15.358 59.565 12.185 4.943 1.273 -2.698 HNK BY6 115 BY6 H34 H34 H 0 1 N N N 16.626 61.920 12.187 3.274 0.036 -2.969 H34 BY6 116 BY6 HOH2 HOH2 H 0 0 N N N 17.629 60.673 8.808 4.857 -2.458 -5.028 HOH2 BY6 117 BY6 H31 H31 H 0 1 N N N 15.669 60.998 9.489 5.972 -1.417 -3.064 H31 BY6 118 BY6 HB HB H 0 1 N N N 15.862 58.978 8.377 7.992 -0.254 -3.676 HB BY6 119 BY6 HBA HBA H 0 1 N N N 16.759 58.209 9.730 7.205 -0.737 -5.198 HBA BY6 120 BY6 HBB HBB H 0 1 N N N 14.965 58.288 9.772 7.088 0.946 -4.630 HBB BY6 121 BY6 H33 H33 H 0 1 N N N 17.630 59.774 11.473 4.601 0.433 -5.066 H33 BY6 122 BY6 HC HC H 0 1 N N N 17.473 64.106 11.075 3.430 -2.885 -3.834 HC BY6 123 BY6 HCA HCA H 0 1 N N N 18.371 63.140 9.856 4.318 -2.191 -2.456 HCA BY6 124 BY6 HCB HCB H 0 1 N N N 16.575 63.129 9.865 2.538 -2.237 -2.436 HCB BY6 125 BY6 HNL HNL H 0 1 N N N 18.223 60.363 13.351 0.811 -1.086 -3.272 HNL BY6 126 BY6 H37 H37 H 0 1 N N N 20.370 61.945 14.525 -0.043 -0.223 -5.920 H37 BY6 127 BY6 H38 H38 H 0 1 N N N 19.798 58.749 14.839 -1.001 -2.385 -6.568 H38 BY6 128 BY6 HOH3 HOH3 H 0 0 N N N 18.857 60.236 16.688 -1.279 -3.201 -4.310 HOH3 BY6 129 BY6 HD HD H 0 1 N N N 21.989 59.669 15.535 1.910 -2.727 -5.720 HD BY6 130 BY6 HDA HDA H 0 1 N N N 21.076 60.566 16.796 1.075 -3.600 -7.027 HDA BY6 131 BY6 HDB HDB H 0 1 N N N 20.992 58.772 16.730 1.377 -1.852 -7.176 HDB BY6 132 BY6 HNM HNM H 0 1 N N N 22.419 61.760 14.270 -2.615 -0.649 -6.053 HNM BY6 133 BY6 H42 H42 H 0 1 N N N 23.991 58.980 13.855 -5.062 -1.311 -5.969 H42 BY6 134 BY6 H42A H42A H 0 0 N N N 24.582 60.371 14.772 -4.895 0.461 -5.980 H42A BY6 135 BY6 H41 H41 H 0 1 N N N 23.614 60.406 11.830 -4.021 -1.396 -3.720 H41 BY6 136 BY6 H41A H41A H 0 0 N N N 24.309 61.804 12.616 -3.854 0.377 -3.731 H41A BY6 137 BY6 H44 H44 H 0 1 N N N 28.783 58.249 11.564 -9.381 -0.771 -2.871 H44 BY6 138 BY6 H47 H47 H 0 1 N N N 31.212 63.640 12.695 -9.838 5.234 -2.329 H47 BY6 139 BY6 HNP HNP H 0 1 N N N 32.369 59.964 10.568 -12.013 1.330 -1.259 HNP BY6 140 BY6 HO59 HO59 H 0 0 N N N 8.674 66.092 15.577 10.390 2.780 1.038 HO59 BY6 141 BY6 HO58 HO58 H 0 0 N N N 12.095 63.326 16.486 6.470 1.046 2.927 HO58 BY6 142 BY6 H61 H61 H 0 1 N N N 12.369 67.446 15.098 9.731 0.481 -0.160 H61 BY6 143 BY6 H61A H61A H 0 0 N N N 11.377 67.224 13.644 10.030 2.104 -0.827 H61A BY6 144 BY6 HO61 HO61 H 0 0 N N N 13.153 66.648 12.530 9.554 0.510 -2.542 HO61 BY6 145 BY6 H60 H60 H 0 1 N N N 12.698 64.967 15.255 7.295 1.117 0.092 H60 BY6 146 BY6 H63 H63 H 0 1 N N N 10.818 62.455 12.981 6.180 4.534 -0.428 H63 BY6 147 BY6 H57 H57 H 0 1 N N N 9.169 63.734 14.459 7.644 4.761 1.544 H57 BY6 148 BY6 H58 H58 H 0 1 N N N 9.391 63.801 16.742 7.654 3.027 3.296 H58 BY6 149 BY6 H59 H59 H 0 1 N N N 10.762 66.042 16.555 8.843 1.237 2.008 H59 BY6 150 BY6 H69 H69 H 0 1 N N N 8.972 60.025 16.696 4.871 6.263 4.045 H69 BY6 151 BY6 H68 H68 H 0 1 N N N 10.571 59.347 14.733 3.266 4.701 3.018 H68 BY6 152 BY6 H67 H67 H 0 1 N N N 8.021 58.101 13.532 2.523 7.066 1.234 H67 BY6 153 BY6 H65 H65 H 0 1 N N N 10.137 60.301 12.676 3.883 4.415 0.569 H65 BY6 154 BY6 H64 H64 H 0 1 N N N 7.737 61.870 15.308 6.451 6.462 2.121 H64 BY6 155 BY6 HO67 HO67 H 0 0 N N N 9.991 58.066 11.826 1.063 5.456 0.311 HO67 BY6 156 BY6 HO69 HO69 H 0 0 N N N 6.967 59.052 16.543 5.157 8.384 2.982 HO69 BY6 157 BY6 HNQ HNQ H 0 1 N N N 11.137 56.262 17.985 0.495 6.788 5.590 HNQ BY6 158 BY6 HNQA HNQA H 0 0 N N N 9.846 55.585 16.959 1.227 5.872 6.794 HNQA BY6 159 BY6 HO66 HO66 H 0 0 N N N 8.731 61.892 11.447 4.043 5.328 -2.846 HO66 BY6 160 BY6 H66 H66 H 0 1 N N N 9.148 59.194 10.695 2.331 5.335 -1.180 H66 BY6 161 BY6 H66A H66A H 0 0 N N N 7.516 59.578 11.260 3.272 6.846 -1.171 H66A BY6 162 BY6 C50 C50 C 0 1 N N N 34.349 59.714 11.082 -13.593 2.376 -0.302 C50 BY6 163 BY6 C52 C52 C 0 1 N N N 35.029 59.322 12.404 -14.197 0.999 -0.020 C52 BY6 164 BY6 C53 C53 C 0 1 N N N 34.189 58.331 13.249 -15.512 1.165 0.743 C53 BY6 165 BY6 N18 N18 N 0 1 N N N 34.914 57.966 14.568 -16.092 -0.157 1.014 N18 BY6 166 BY6 C54 C54 C 0 1 N N N 34.081 56.980 15.412 -17.359 -0.036 1.747 C54 BY6 167 BY6 C55 C55 C 0 1 N N N 34.807 56.618 16.726 -17.931 -1.431 2.010 C55 BY6 168 BY6 C56 C56 C 0 1 N N N 33.964 55.633 17.558 -19.251 -1.305 2.774 C56 BY6 169 BY6 C571 C571 C 0 0 N N N 34.686 55.270 18.871 -19.823 -2.700 3.037 C571 BY6 170 BY6 N19 N19 N 0 1 N N N 33.840 54.285 19.701 -21.090 -2.579 3.770 N19 BY6 171 BY6 C581 C581 C 0 0 N N N 34.556 53.918 21.016 -21.670 -3.901 4.041 C581 BY6 172 BY6 C591 C591 C 0 0 N N N 33.708 52.930 21.847 -22.985 -3.735 4.805 C591 BY6 173 BY6 C601 C601 C 0 0 N N N 34.408 52.549 23.169 -23.589 -5.112 5.086 C601 BY6 174 BY6 N20 N20 N 0 1 N N N 33.556 51.564 23.993 -24.852 -4.952 5.819 N20 BY6 175 BY6 H50 H50 H 0 1 N N N 34.152 58.770 10.553 -13.403 2.889 0.641 H50 BY6 176 BY6 H50A H50A H 0 0 N N N 35.055 60.432 10.638 -14.290 2.963 -0.901 H50A BY6 177 BY6 H75 H75 H 0 1 N N N 35.992 58.845 12.169 -14.387 0.486 -0.963 H75 BY6 178 BY6 H76 H76 H 0 1 N N N 35.151 60.240 12.997 -13.501 0.412 0.579 H76 BY6 179 BY6 H77 H77 H 0 1 N N N 33.223 58.799 13.491 -15.323 1.678 1.686 H77 BY6 180 BY6 H78 H78 H 0 1 N N N 34.042 57.411 12.665 -16.209 1.752 0.144 H78 BY6 181 BY6 H79 H79 H 0 1 N N N 35.792 57.541 14.347 -16.218 -0.679 0.159 H79 BY6 182 BY6 H80 H80 H 0 1 N N N 33.115 57.447 15.655 -17.182 0.468 2.697 H80 BY6 183 BY6 H81 H81 H 0 1 N N N 33.934 56.059 14.829 -18.068 0.542 1.155 H81 BY6 184 BY6 H82 H82 H 0 1 N N N 35.774 56.151 16.486 -18.108 -1.936 1.060 H82 BY6 185 BY6 H83 H83 H 0 1 N N N 34.961 57.536 17.312 -17.222 -2.009 2.602 H83 BY6 186 BY6 H84 H84 H 0 1 N N N 32.998 56.101 17.797 -19.074 -0.800 3.724 H84 BY6 187 BY6 H85 H85 H 0 1 N N N 33.812 54.715 16.972 -19.960 -0.727 2.182 H85 BY6 188 BY6 H86 H86 H 0 1 N N N 35.652 54.802 18.633 -20.000 -3.204 2.087 H86 BY6 189 BY6 H87 H87 H 0 1 N N N 34.839 56.188 19.457 -19.114 -3.278 3.629 H87 BY6 190 BY6 H88 H88 H 0 1 N N N 32.962 54.712 19.917 -20.965 -2.057 4.625 H88 BY6 191 BY6 H89 H89 H 0 1 N N N 35.522 53.449 20.779 -21.860 -4.414 3.098 H89 BY6 192 BY6 H90 H90 H 0 1 N N N 34.705 54.836 21.604 -20.974 -4.488 4.640 H90 BY6 193 BY6 H91 H91 H 0 1 N N N 32.743 53.403 22.082 -22.796 -3.221 5.747 H91 BY6 194 BY6 H92 H92 H 0 1 N N N 33.568 52.014 21.255 -23.682 -3.148 4.205 H92 BY6 195 BY6 H93 H93 H 0 1 N N N 35.373 52.075 22.936 -23.779 -5.625 4.143 H93 BY6 196 BY6 H94 H94 H 0 1 N N N 34.552 53.464 23.762 -22.893 -5.698 5.685 H94 BY6 197 BY6 H95 H95 H 0 1 N N N 33.371 50.746 23.448 -25.492 -4.358 5.313 H95 BY6 198 BY6 H96 H96 H 0 1 N N N 34.052 51.307 24.822 -25.271 -5.848 6.017 H96 BY6 199 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BY6 NA C1 SING N N 1 BY6 NA HNA SING N N 2 BY6 NA HNAA SING N N 3 BY6 C2 C1 SING N N 4 BY6 C2 C3 SING N N 5 BY6 C2 NB SING N N 6 BY6 C2 H2 SING N N 7 BY6 C1 O1 DOUB N N 8 BY6 NC C3 SING N N 9 BY6 NC C6 SING N N 10 BY6 NC HNC SING N N 11 BY6 C3 H3 SING N N 12 BY6 C3 H3A SING N N 13 BY6 NB HNB SING N N 14 BY6 NB HNBA SING N N 15 BY6 ND C4 SING N N 16 BY6 ND HND SING N N 17 BY6 ND HNDA SING N N 18 BY6 C5 C4 SING N N 19 BY6 C5 C6 SING N N 20 BY6 C5 H5 SING N N 21 BY6 C5 H5A SING N N 22 BY6 C4 O4 DOUB N N 23 BY6 C8 C9 DOUB Y N 24 BY6 C8 NE SING Y N 25 BY6 C8 NF SING N N 26 BY6 C9 C10 SING Y N 27 BY6 C9 CA SING N N 28 BY6 C10 NG DOUB Y N 29 BY6 C10 C12 SING N N 30 BY6 NG C7 SING Y N 31 BY6 C7 NE DOUB Y N 32 BY6 C7 C6 SING N N 33 BY6 C6 H6 SING N N 34 BY6 NF HNF SING N N 35 BY6 NF HNFA SING N N 36 BY6 CA HA SING N N 37 BY6 CA HAA SING N N 38 BY6 CA HAB SING N N 39 BY6 C12 O12 DOUB N N 40 BY6 C12 NH SING N N 41 BY6 NH C13 SING N N 42 BY6 NH HNH SING N N 43 BY6 C13 C30 SING N N 44 BY6 C13 C14 SING N N 45 BY6 C13 H13 SING N N 46 BY6 C30 O30 DOUB N N 47 BY6 C30 NK SING N N 48 BY6 C14 C27 SING N N 49 BY6 C14 OH1 SING N N 50 BY6 C14 H14 SING N N 51 BY6 C27 NJ SING Y N 52 BY6 C27 C28 DOUB Y N 53 BY6 OH1 C63 SING N N 54 BY6 NJ C29 DOUB Y N 55 BY6 C28 NI SING Y N 56 BY6 C28 H28 SING N N 57 BY6 C29 NI SING Y N 58 BY6 C29 H29 SING N N 59 BY6 NI HNI SING N N 60 BY6 NK C31 SING N N 61 BY6 NK HNK SING N N 62 BY6 C34 C36 SING N N 63 BY6 C34 C33 SING N N 64 BY6 C34 CC SING N N 65 BY6 C34 H34 SING N N 66 BY6 C36 O36 DOUB N N 67 BY6 C36 NL SING N N 68 BY6 OH2 C33 SING N N 69 BY6 OH2 HOH2 SING N N 70 BY6 C31 CB SING N N 71 BY6 C31 C33 SING N N 72 BY6 C31 H31 SING N N 73 BY6 CB HB SING N N 74 BY6 CB HBA SING N N 75 BY6 CB HBB SING N N 76 BY6 C33 H33 SING N N 77 BY6 CC HC SING N N 78 BY6 CC HCA SING N N 79 BY6 CC HCB SING N N 80 BY6 NL C37 SING N N 81 BY6 NL HNL SING N N 82 BY6 C37 C40 SING N N 83 BY6 C37 C38 SING N N 84 BY6 C37 H37 SING N N 85 BY6 C40 O40 DOUB N N 86 BY6 C40 NM SING N N 87 BY6 C38 OH3 SING N N 88 BY6 C38 CD SING N N 89 BY6 C38 H38 SING N N 90 BY6 OH3 HOH3 SING N N 91 BY6 CD HD SING N N 92 BY6 CD HDA SING N N 93 BY6 CD HDB SING N N 94 BY6 NM C41 SING N N 95 BY6 NM HNM SING N N 96 BY6 C42 C43 SING N N 97 BY6 C42 C41 SING N N 98 BY6 C42 H42 SING N N 99 BY6 C42 H42A SING N N 100 BY6 C49 O49 DOUB N N 101 BY6 C49 C48 SING N N 102 BY6 C49 NP SING N N 103 BY6 C43 S43 SING Y N 104 BY6 C43 NN DOUB Y N 105 BY6 C41 H41 SING N N 106 BY6 C41 H41A SING N N 107 BY6 S43 C44 SING Y N 108 BY6 C44 C45 DOUB Y N 109 BY6 C44 H44 SING N N 110 BY6 C45 NN SING Y N 111 BY6 C45 C46 SING Y N 112 BY6 C47 C48 DOUB Y N 113 BY6 C47 S46 SING Y N 114 BY6 C47 H47 SING N N 115 BY6 C48 NO SING Y N 116 BY6 NO C46 DOUB Y N 117 BY6 C46 S46 SING Y N 118 BY6 NP HNP SING N N 119 BY6 O59 C59 SING N N 120 BY6 O59 HO59 SING N N 121 BY6 O58 C58 SING N N 122 BY6 O58 HO58 SING N N 123 BY6 C61 O61 SING N N 124 BY6 C61 C60 SING N N 125 BY6 C61 H61 SING N N 126 BY6 C61 H61A SING N N 127 BY6 O61 HO61 SING N N 128 BY6 O56 C57 SING N N 129 BY6 O56 C64 SING N N 130 BY6 C60 O62 SING N N 131 BY6 C60 C59 SING N N 132 BY6 C60 H60 SING N N 133 BY6 O62 C63 SING N N 134 BY6 C63 C57 SING N N 135 BY6 C63 H63 SING N N 136 BY6 C57 C58 SING N N 137 BY6 C57 H57 SING N N 138 BY6 C58 C59 SING N N 139 BY6 C58 H58 SING N N 140 BY6 C59 H59 SING N N 141 BY6 C69 C68 SING N N 142 BY6 C69 C64 SING N N 143 BY6 C69 O69 SING N N 144 BY6 C69 H69 SING N N 145 BY6 C68 C67 SING N N 146 BY6 C68 O68 SING N N 147 BY6 C68 H68 SING N N 148 BY6 C67 C65 SING N N 149 BY6 C67 O67 SING N N 150 BY6 C67 H67 SING N N 151 BY6 C65 O64 SING N N 152 BY6 C65 C66 SING N N 153 BY6 C65 H65 SING N N 154 BY6 O64 C64 SING N N 155 BY6 C64 H64 SING N N 156 BY6 O68 C70 SING N N 157 BY6 O67 HO67 SING N N 158 BY6 O69 HO69 SING N N 159 BY6 NQ C70 SING N N 160 BY6 NQ HNQ SING N N 161 BY6 NQ HNQA SING N N 162 BY6 C70 O70 DOUB N N 163 BY6 O66 C66 SING N N 164 BY6 O66 HO66 SING N N 165 BY6 C66 H66 SING N N 166 BY6 C66 H66A SING N N 167 BY6 NP C50 SING N N 168 BY6 C50 C52 SING N N 169 BY6 C52 C53 SING N N 170 BY6 C53 N18 SING N N 171 BY6 N18 C54 SING N N 172 BY6 C54 C55 SING N N 173 BY6 C55 C56 SING N N 174 BY6 C56 C571 SING N N 175 BY6 C571 N19 SING N N 176 BY6 N19 C581 SING N N 177 BY6 C581 C591 SING N N 178 BY6 C591 C601 SING N N 179 BY6 C601 N20 SING N N 180 BY6 C50 H50 SING N N 181 BY6 C50 H50A SING N N 182 BY6 C52 H75 SING N N 183 BY6 C52 H76 SING N N 184 BY6 C53 H77 SING N N 185 BY6 C53 H78 SING N N 186 BY6 N18 H79 SING N N 187 BY6 C54 H80 SING N N 188 BY6 C54 H81 SING N N 189 BY6 C55 H82 SING N N 190 BY6 C55 H83 SING N N 191 BY6 C56 H84 SING N N 192 BY6 C56 H85 SING N N 193 BY6 C571 H86 SING N N 194 BY6 C571 H87 SING N N 195 BY6 N19 H88 SING N N 196 BY6 C581 H89 SING N N 197 BY6 C581 H90 SING N N 198 BY6 C591 H91 SING N N 199 BY6 C591 H92 SING N N 200 BY6 C601 H93 SING N N 201 BY6 C601 H94 SING N N 202 BY6 N20 H95 SING N N 203 BY6 N20 H96 SING N N 204 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BY6 SMILES ACDLabs 10.04 "O=C(N)CC(NCC(C(=O)N)N)c1nc(N)c(c(n1)C(=O)NC(C(=O)NC(C)C(O)C(C(=O)NC(C(=O)NCCc2nc(cs2)c3nc(C(=O)NCCCNCCCCNCCCN)cs3)C(O)C)C)C(OC5OC(CO)C(O)C(O)C5OC4OC(CO)C(O)C(OC(=O)N)C4O)c6ncnc6)C" BY6 SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O)[C@H](NC(=O)[C@@H](C)[C@H](O)[C@@H](C)NC(=O)[C@@H](NC(=O)c1nc(nc(N)c1C)[C@H](CC(N)=O)NC[C@H](N)C(N)=O)[C@@H](O[C@@H]2O[C@@H](CO)[C@@H](O)[C@H](O)[C@@H]2O[C@H]3O[C@H](CO)[C@@H](O)[C@H](OC(N)=O)[C@@H]3O)c4c[nH]cn4)C(=O)NCCc5scc(n5)c6scc(n6)C(=O)NCCCNCCCCNCCCN" BY6 SMILES CACTVS 3.341 "C[CH](O)[CH](NC(=O)[CH](C)[CH](O)[CH](C)NC(=O)[CH](NC(=O)c1nc(nc(N)c1C)[CH](CC(N)=O)NC[CH](N)C(N)=O)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](OC(N)=O)[CH]3O)c4c[nH]cn4)C(=O)NCCc5scc(n5)c6scc(n6)C(=O)NCCCNCCCCNCCCN" BY6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(nc(nc1N)[C@H](CC(=O)N)NC[C@@H](C(=O)N)N)C(=O)N[C@@H]([C@H](c2c[nH]cn2)O[C@H]3[C@H]([C@H]([C@@H]([C@@H](O3)CO)O)O)O[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)OC(=O)N)O)C(=O)N[C@H](C)[C@H]([C@H](C)C(=O)N[C@@H]([C@@H](C)O)C(=O)NCCc5nc(cs5)c6nc(cs6)C(=O)NCCCNCCCCNCCCN)O" BY6 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(nc(nc1N)C(CC(=O)N)NCC(C(=O)N)N)C(=O)NC(C(c2c[nH]cn2)OC3C(C(C(C(O3)CO)O)O)OC4C(C(C(C(O4)CO)O)OC(=O)N)O)C(=O)NC(C)C(C(C)C(=O)NC(C(C)O)C(=O)NCCc5nc(cs5)c6nc(cs6)C(=O)NCCCNCCCCNCCCN)O" BY6 InChI InChI 1.03 "InChI=1S/C60H96N20O21S2/c1-25-38(77-51(80-49(25)64)30(17-36(63)84)72-18-29(62)50(65)90)55(94)79-40(46(31-19-69-24-73-31)99-59-48(44(88)42(86)34(20-81)98-59)100-58-45(89)47(101-60(66)96)43(87)35(21-82)97-58)56(95)74-27(3)41(85)26(2)52(91)78-39(28(4)83)54(93)71-16-9-37-75-33(23-102-37)57-76-32(22-103-57)53(92)70-15-8-14-68-12-6-5-11-67-13-7-10-61/h19,22-24,26-30,34-35,39-48,58-59,67-68,72,81-83,85-89H,5-18,20-21,61-62H2,1-4H3,(H2,63,84)(H2,65,90)(H2,66,96)(H,69,73)(H,70,92)(H,71,93)(H,74,95)(H,78,91)(H,79,94)(H2,64,77,80)/t26-,27+,28+,29-,30-,34-,35+,39-,40-,41-,42+,43+,44-,45-,46-,47-,48-,58+,59-/m0/s1" BY6 InChIKey InChI 1.03 FOUFFVYWFNBHHH-YNGSZULRSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BY6 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3S,4S,5R,6R)-2-{[(2R,3S,4S,5S,6S)-2-{[(1R,2S)-2-[({6-amino-2-[(1S)-3-amino-1-{[(2S)-2,3-diamino-3-oxopropyl]amino}-3-oxopropyl]-5-methylpyrimidin-4-yl}carbonyl)amino]-3-{[(1R,2S,3S)-4-{[(1S,2R)-1-{[2-(4-{[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]carbamoyl}-2,4'-bi-1,3-thiazol-2'-yl)ethyl]carbamoyl}-2-hydroxypropyl]amino}-2-hydroxy-1,3-dimethyl-4-oxobutyl]amino}-1-(1H-imidazol-4-yl)-3-oxopropyl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl carbamate (non-preferred name)" BY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5R,6R)-2-[(2R,3S,4S,5S,6S)-2-[(1R,2S)-2-[[6-amino-2-[(1S)-3-amino-1-[[(2S)-2,3-diamino-3-oxo-propyl]amino]-3-oxo-propyl]-5-methyl-pyrimidin-4-yl]carbonylamino]-3-[[(2R,3S,4S)-5-[[(2S,3R)-1-[2-[4-[4-[3-[4-(3-aminopropylamino)butylamino]propylcarbamoyl]-1,3-thiazol-2-yl]-1,3-thiazol-2-yl]ethylamino]-3-hydroxy-1-oxo-butan-2-yl]amino]-3-hydroxy-4-methyl-5-oxo-pentan-2-yl]amino]-1-(1H-imidazol-4-yl)-3-oxo-propoxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl] carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BY6 "Create component" 2008-02-13 PDBJ BY6 "Modify aromatic_flag" 2011-06-04 RCSB BY6 "Modify descriptor" 2011-06-04 RCSB BY6 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BY6 _pdbx_chem_comp_synonyms.name "Bleomycin A6" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##