data_BZG # _chem_comp.id BZG _chem_comp.name "6-(BENZYLOXY)-9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-9H-PURIN-2-AMINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C17 H20 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "O6-BENZYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-01-17 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 437.344 _chem_comp.one_letter_code N _chem_comp.three_letter_code BZG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BZG P P P 0 1 N N N 41.721 37.076 14.331 6.408 1.886 0.376 P BZG 1 BZG O1P O1P O 0 1 N N N 42.514 35.899 14.756 6.699 2.459 1.852 O1P BZG 2 BZG O2P O2P O 0 1 N N N 42.451 38.328 14.605 7.661 1.349 -0.201 O2P BZG 3 BZG "O5'" "O5'" O 0 1 N N N 40.308 37.145 15.088 5.311 0.710 0.464 "O5'" BZG 4 BZG CZ1 CZ1 C 0 1 Y N N 35.221 29.229 10.992 -7.041 1.027 -1.270 CZ1 BZG 5 BZG CT1 CT1 C 0 1 Y N N 35.457 28.223 10.058 -7.909 2.061 -1.571 CT1 BZG 6 BZG CI CI C 0 1 Y N N 34.684 28.149 8.907 -8.230 2.996 -0.605 CI BZG 7 BZG CT2 CT2 C 0 1 Y N N 33.672 29.080 8.687 -7.684 2.898 0.661 CT2 BZG 8 BZG CZ2 CZ2 C 0 1 Y N N 33.438 30.081 9.619 -6.816 1.865 0.961 CZ2 BZG 9 BZG CE CE C 0 1 Y N N 34.214 30.157 10.773 -6.495 0.929 -0.004 CE BZG 10 BZG CW CW C 0 1 N N N 34.003 31.194 11.676 -5.550 -0.198 0.323 CW BZG 11 BZG OL OL O 0 1 N N N 34.185 32.533 11.201 -4.209 0.206 0.036 OL BZG 12 BZG CK CK C 0 1 Y N N 34.010 33.491 12.154 -3.230 -0.698 0.277 CK BZG 13 BZG NJ NJ N 0 1 Y N N 32.865 34.183 12.187 -3.520 -1.900 0.757 NJ BZG 14 BZG CH CH C 0 1 Y N N 32.754 35.288 12.943 -2.568 -2.793 0.996 CH BZG 15 BZG NI NI N 0 1 N N N 31.612 35.971 12.942 -2.925 -4.034 1.497 NI BZG 16 BZG NG NG N 0 1 Y N N 33.778 35.726 13.685 -1.289 -2.538 0.771 NG BZG 17 BZG CF CF C 0 1 Y N N 34.941 35.063 13.697 -0.910 -1.359 0.291 CF BZG 18 BZG CM CM C 0 1 Y N N 35.082 33.911 12.931 -1.887 -0.385 0.018 CM BZG 19 BZG NN NN N 0 1 Y N N 36.316 33.460 13.125 -1.239 0.705 -0.463 NN BZG 20 BZG CO CO C 0 1 Y N N 36.933 34.290 13.960 0.039 0.466 -0.506 CO BZG 21 BZG NE NE N 0 1 Y N N 36.104 35.276 14.303 0.293 -0.792 -0.043 NE BZG 22 BZG "CT'" "CT'" C 0 1 N N R 36.486 36.490 15.056 1.610 -1.426 0.062 "CT'" BZG 23 BZG "OS'" "OS'" O 0 1 N N N 37.602 37.096 14.389 2.645 -0.424 0.162 "OS'" BZG 24 BZG "CP'" "CP'" C 0 1 N N N 37.070 36.182 16.434 1.937 -2.205 -1.231 "CP'" BZG 25 BZG "C5'" "C5'" C 0 1 N N N 39.576 38.353 15.063 4.915 -0.071 -0.665 "C5'" BZG 26 BZG "C4'" "C4'" C 0 1 N N R 38.102 38.058 15.332 3.862 -1.093 -0.235 "C4'" BZG 27 BZG "C3'" "C3'" C 0 1 N N S 37.830 37.479 16.716 3.453 -1.981 -1.431 "C3'" BZG 28 BZG "O3'" "O3'" O 0 1 N N N 37.007 38.419 17.407 4.152 -3.226 -1.393 "O3'" BZG 29 BZG OXT OXT O 0 1 N Y N 41.308 37.007 12.796 5.850 3.071 -0.561 OXT BZG 30 BZG H1P H1P H 0 1 N N N 43.341 36.189 15.123 7.352 3.172 1.875 H1P BZG 31 BZG HOT HOT H 0 1 N Y N 41.612 37.789 12.350 5.029 3.470 -0.243 HOT BZG 32 BZG "H5'1" "H5'1" H 0 0 N N N 39.962 39.032 15.838 4.496 0.582 -1.431 "H5'1" BZG 33 BZG "H5'2" "H5'2" H 0 0 N N N 39.681 38.826 14.075 5.784 -0.592 -1.068 "H5'2" BZG 34 BZG HZ1 HZ1 H 0 1 N N N 35.823 29.286 11.887 -6.793 0.294 -2.024 HZ1 BZG 35 BZG HT1 HT1 H 0 1 N N N 36.241 27.500 10.229 -8.335 2.138 -2.560 HT1 BZG 36 BZG HI HI H 0 1 N N N 34.868 27.369 8.182 -8.907 3.804 -0.840 HI BZG 37 BZG HT2 HT2 H 0 1 N N N 33.070 29.023 7.792 -7.935 3.629 1.416 HT2 BZG 38 BZG HZ2 HZ2 H 0 1 N N N 32.653 30.803 9.449 -6.390 1.788 1.951 HZ2 BZG 39 BZG HWC1 HWC1 H 0 0 N N N 32.967 31.111 12.037 -5.635 -0.448 1.380 HWC1 BZG 40 BZG HWC2 HWC2 H 0 0 N N N 34.697 31.045 12.516 -5.803 -1.071 -0.279 HWC2 BZG 41 BZG HIN1 HIN1 H 0 0 N N N 30.957 35.525 12.332 -3.858 -4.238 1.667 HIN1 BZG 42 BZG HIN2 HIN2 H 0 0 N N N 31.239 35.997 13.869 -2.242 -4.699 1.678 HIN2 BZG 43 BZG HO HO H 0 1 N N N 37.950 34.182 14.307 0.788 1.164 -0.849 HO BZG 44 BZG "HT'" "HT'" H 0 1 N N N 35.637 37.184 15.146 1.641 -2.091 0.926 "HT'" BZG 45 BZG "HP'1" "HP'1" H 0 0 N N N 36.280 36.005 17.179 1.721 -3.266 -1.103 "HP'1" BZG 46 BZG "HP'2" "HP'2" H 0 0 N N N 37.746 35.315 16.403 1.376 -1.799 -2.073 "HP'2" BZG 47 BZG "H4'" "H4'" H 0 1 N N N 37.538 38.997 15.233 4.241 -1.707 0.583 "H4'" BZG 48 BZG "H3'" "H3'" H 0 1 N N N 38.771 37.274 17.248 3.641 -1.464 -2.372 "H3'" BZG 49 BZG HA HA H 0 1 N N N 37.501 39.214 17.570 3.890 -3.846 -2.087 HA BZG 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BZG P O1P SING N N 1 BZG P O2P DOUB N N 2 BZG P "O5'" SING N N 3 BZG P OXT SING N N 4 BZG O1P H1P SING N N 5 BZG "O5'" "C5'" SING N N 6 BZG CZ1 CT1 SING Y N 7 BZG CZ1 CE DOUB Y N 8 BZG CZ1 HZ1 SING N N 9 BZG CT1 CI DOUB Y N 10 BZG CT1 HT1 SING N N 11 BZG CI CT2 SING Y N 12 BZG CI HI SING N N 13 BZG CT2 CZ2 DOUB Y N 14 BZG CT2 HT2 SING N N 15 BZG CZ2 CE SING Y N 16 BZG CZ2 HZ2 SING N N 17 BZG CE CW SING N N 18 BZG CW OL SING N N 19 BZG CW HWC1 SING N N 20 BZG CW HWC2 SING N N 21 BZG OL CK SING N N 22 BZG CK NJ SING Y N 23 BZG CK CM DOUB Y N 24 BZG NJ CH DOUB Y N 25 BZG CH NI SING N N 26 BZG CH NG SING Y N 27 BZG NI HIN1 SING N N 28 BZG NI HIN2 SING N N 29 BZG NG CF DOUB Y N 30 BZG CF CM SING Y N 31 BZG CF NE SING Y N 32 BZG CM NN SING Y N 33 BZG NN CO DOUB Y N 34 BZG CO NE SING Y N 35 BZG CO HO SING N N 36 BZG NE "CT'" SING N N 37 BZG "CT'" "OS'" SING N N 38 BZG "CT'" "CP'" SING N N 39 BZG "CT'" "HT'" SING N N 40 BZG "OS'" "C4'" SING N N 41 BZG "CP'" "C3'" SING N N 42 BZG "CP'" "HP'1" SING N N 43 BZG "CP'" "HP'2" SING N N 44 BZG "C5'" "C4'" SING N N 45 BZG "C5'" "H5'1" SING N N 46 BZG "C5'" "H5'2" SING N N 47 BZG "C4'" "C3'" SING N N 48 BZG "C4'" "H4'" SING N N 49 BZG "C3'" "O3'" SING N N 50 BZG "C3'" "H3'" SING N N 51 BZG "O3'" HA SING N N 52 BZG OXT HOT SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BZG SMILES ACDLabs 12.01 "O=P(O)(O)OCC4OC(n3cnc2c3nc(nc2OCc1ccccc1)N)CC4O" BZG InChI InChI 1.03 "InChI=1S/C17H20N5O7P/c18-17-20-15-14(16(21-17)27-7-10-4-2-1-3-5-10)19-9-22(15)13-6-11(23)12(29-13)8-28-30(24,25)26/h1-5,9,11-13,23H,6-8H2,(H2,18,20,21)(H2,24,25,26)/t11-,12+,13+/m0/s1" BZG InChIKey InChI 1.03 QWBOXDSUUMFHFW-YNEHKIRRSA-N BZG SMILES_CANONICAL CACTVS 3.370 "Nc1nc(OCc2ccccc2)c3ncn([C@H]4C[C@H](O)[C@@H](CO[P](O)(O)=O)O4)c3n1" BZG SMILES CACTVS 3.370 "Nc1nc(OCc2ccccc2)c3ncn([CH]4C[CH](O)[CH](CO[P](O)(O)=O)O4)c3n1" BZG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)COc2c3c(nc(n2)N)n(cn3)[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O" BZG SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)COc2c3c(nc(n2)N)n(cn3)C4CC(C(O4)COP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BZG "SYSTEMATIC NAME" ACDLabs 12.01 "6-(benzyloxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine" BZG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(2-azanyl-6-phenylmethoxy-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BZG "Create component" 2007-01-17 RCSB BZG "Modify descriptor" 2011-06-04 RCSB BZG "Modify leaving atom flag" 2012-11-02 RCSB BZG "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BZG _pdbx_chem_comp_synonyms.name "O6-BENZYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##