data_C12 # _chem_comp.id C12 _chem_comp.name "2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C15 H18 N3 O4" _chem_comp.mon_nstd_parent_comp_id "THR, TYR, GLY" _chem_comp.pdbx_synonyms "PEPTIDE DERIVED CHROMOPHORE" _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-02-23 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.321 _chem_comp.one_letter_code TYG _chem_comp.three_letter_code C12 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C12 C1 C1 C 0 1 Y N N Y N N 0.080 4.684 3.027 1.659 0.156 0.112 C1 C12 1 C12 N2 N2 N 0 1 Y N N Y N N -1.162 4.212 3.085 0.676 0.907 0.526 N2 C12 2 C12 CA2 CA2 C 0 1 Y N N Y N N -1.463 3.962 4.405 -0.197 0.157 1.217 CA2 C12 3 C12 CG1 CG1 C 0 1 N N N N N N 0.427 5.470 -0.635 4.940 1.976 -0.643 CG1 C12 4 C12 OG1 OG1 O 0 1 N N N N N N -1.110 4.213 0.587 3.102 2.459 0.850 OG1 C12 5 C12 C2 C2 C 0 1 Y N N Y N N -0.391 4.277 5.210 0.262 -1.114 1.233 C2 C12 6 C12 O2 O2 O -1 1 N N N Y N N -0.090 4.264 6.428 -0.330 -2.182 1.829 O2 C12 7 C12 N3 N3 N 0 1 Y N N Y N N 0.578 4.736 4.291 1.437 -1.120 0.528 N3 C12 8 C12 CA1 CA1 C 0 1 N N R Y N N 0.783 5.080 1.774 2.840 0.623 -0.699 CA1 C12 9 C12 N1 N1 N 0 1 N N N Y Y N 1.766 4.055 1.361 2.375 1.498 -1.783 N1 C12 10 C12 CB1 CB1 C 0 1 N N R N N N -0.241 5.368 0.645 3.804 1.396 0.203 CB1 C12 11 C12 CA3 CA3 C 0 1 N N N Y N N 1.862 5.159 4.851 2.296 -2.279 0.278 CA3 C12 12 C12 C3 C3 C 0 1 N N N Y N Y 2.060 6.565 5.089 1.872 -2.952 -1.002 C3 C12 13 C12 O3 O3 O 0 1 N N N Y N Y 2.978 6.994 5.890 2.677 -3.134 -1.884 O3 C12 14 C12 CB2 CB2 C 0 1 N N N N N N -2.824 3.395 4.897 -1.468 0.648 1.861 CB2 C12 15 C12 CG2 CG2 C 0 1 Y N N N N N -3.688 2.977 3.886 -2.604 0.538 0.878 CG2 C12 16 C12 CD1 CD1 C 0 1 Y N N N N N -4.377 3.913 3.129 -2.898 1.599 0.042 CD1 C12 17 C12 CE1 CE1 C 0 1 Y N N N N N -5.270 3.567 2.089 -3.936 1.499 -0.864 CE1 C12 18 C12 CD2 CD2 C 0 1 Y N N N N N -3.948 1.654 3.534 -3.355 -0.622 0.817 CD2 C12 19 C12 CE2 CE2 C 0 1 Y N N N N N -4.837 1.321 2.496 -4.397 -0.725 -0.084 CE2 C12 20 C12 CZ CZ C 0 1 Y N N N N N -5.506 2.264 1.764 -4.691 0.337 -0.927 CZ C12 21 C12 OH OH O 0 1 N N N N N N -6.367 1.957 0.758 -5.716 0.238 -1.814 OH C12 22 C12 HG11 HG11 H 0 0 N N N N N N 1.085 4.600 -0.775 5.627 2.527 0.000 HG11 C12 23 C12 HG12 HG12 H 0 0 N N N N N N 1.027 6.392 -0.663 5.476 1.165 -1.136 HG12 C12 24 C12 HG13 HG13 H 0 0 N N N N N N -0.323 5.496 -1.439 4.527 2.649 -1.394 HG13 C12 25 C12 HG1 HG1 H 0 1 N N N N N N -1.301 4.005 -0.320 2.753 3.030 0.152 HG1 C12 26 C12 HA1 HA1 H 0 1 N N N Y N N 1.343 6.006 1.973 3.353 -0.240 -1.124 HA1 C12 27 C12 H HN11 H 0 0 N N N Y Y N 2.598 4.151 1.908 1.669 0.985 -2.288 HN11 C12 28 C12 H2 HN12 H 0 0 N Y N Y Y N 1.988 4.176 0.393 1.910 2.279 -1.346 HN12 C12 29 C12 HB1 HB1 H 0 1 N N N N N N -0.777 6.307 0.847 4.218 0.723 0.954 HB1 C12 30 C12 HA31 HA31 H 0 0 N N N Y N N 2.605 4.895 4.084 3.332 -1.951 0.191 HA31 C12 31 C12 HA32 HA32 H 0 0 N N N Y N N 1.966 4.654 5.823 2.207 -2.983 1.106 HA32 C12 32 C12 H3 H3 H 0 1 N N N Y N Y 1.425 7.279 4.585 0.849 -3.271 -1.131 H3 C12 33 C12 HB21 HB21 H 0 0 N N N N N N -3.333 4.218 5.420 -1.687 0.040 2.739 HB21 C12 34 C12 HB22 HB22 H 0 0 N N N N N N -2.612 2.525 5.536 -1.345 1.688 2.161 HB22 C12 35 C12 HD1 HD1 H 0 1 N N N N N N -4.223 4.960 3.345 -2.311 2.504 0.092 HD1 C12 36 C12 HE1 HE1 H 0 1 N N N N N N -5.775 4.349 1.542 -4.163 2.327 -1.520 HE1 C12 37 C12 HD2 HD2 H 0 1 N N N N N N -3.452 0.861 4.074 -3.126 -1.447 1.474 HD2 C12 38 C12 HE2 HE2 H 0 1 N N N N N N -4.998 0.278 2.267 -4.983 -1.631 -0.131 HE2 C12 39 C12 HOH HOH H 0 1 N N N N N N -7.248 1.885 1.106 -6.508 0.561 -1.363 HOH C12 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C12 C1 N2 DOUB Y N 1 C12 C1 N3 SING Y N 2 C12 C1 CA1 SING N N 3 C12 N2 CA2 SING Y N 4 C12 CA2 C2 DOUB Y N 5 C12 CA2 CB2 SING N N 6 C12 CG1 CB1 SING N N 7 C12 CG1 HG11 SING N N 8 C12 CG1 HG12 SING N N 9 C12 CG1 HG13 SING N N 10 C12 OG1 CB1 SING N N 11 C12 OG1 HG1 SING N N 12 C12 C2 O2 SING N N 13 C12 C2 N3 SING Y N 14 C12 N3 CA3 SING N N 15 C12 CA1 N1 SING N N 16 C12 CA1 CB1 SING N N 17 C12 CA1 HA1 SING N N 18 C12 N1 H SING N N 19 C12 N1 H2 SING N N 20 C12 CB1 HB1 SING N N 21 C12 CA3 C3 SING N N 22 C12 CA3 HA31 SING N N 23 C12 CA3 HA32 SING N N 24 C12 C3 O3 DOUB N N 25 C12 C3 H3 SING N N 26 C12 CB2 CG2 SING N N 27 C12 CB2 HB21 SING N N 28 C12 CB2 HB22 SING N N 29 C12 CG2 CD1 SING Y N 30 C12 CG2 CD2 DOUB Y N 31 C12 CD1 CE1 DOUB Y N 32 C12 CD1 HD1 SING N N 33 C12 CE1 CZ SING Y N 34 C12 CE1 HE1 SING N N 35 C12 CD2 CE2 SING Y N 36 C12 CD2 HD2 SING N N 37 C12 CE2 CZ DOUB Y N 38 C12 CE2 HE2 SING N N 39 C12 CZ OH SING N N 40 C12 OH HOH SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C12 SMILES ACDLabs 10.04 "[O-]c1c(nc(n1CC=O)C(N)C(O)C)Cc2ccc(O)cc2" C12 SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O)[C@H](N)c1nc(Cc2ccc(O)cc2)c([O-])n1CC=O" C12 SMILES CACTVS 3.341 "C[CH](O)[CH](N)c1nc(Cc2ccc(O)cc2)c([O-])n1CC=O" C12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]([C@@H](c1nc(c(n1CC=O)[O-])Cc2ccc(cc2)O)N)O" C12 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(c1nc(c(n1CC=O)[O-])Cc2ccc(cc2)O)N)O" C12 InChI InChI 1.03 "InChI=1S/C15H19N3O4/c1-9(20)13(16)14-17-12(15(22)18(14)6-7-19)8-10-2-4-11(21)5-3-10/h2-5,7,9,13,20-22H,6,8,16H2,1H3/p-1/t9-,13+/m1/s1" C12 InChIKey InChI 1.03 KWFLPENCHOQQNX-RNCFNFMXSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C12 "SYSTEMATIC NAME" ACDLabs 10.04 "2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzyl)-1-(2-oxoethyl)-1H-imidazol-5-olate" C12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(1R,2R)-1-amino-2-hydroxy-propyl]-5-[(4-hydroxyphenyl)methyl]-3-(2-oxoethyl)imidazol-4-olate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C12 "Create component" 2006-02-23 RCSB C12 "Modify descriptor" 2011-06-04 RCSB C12 "Modify synonyms" 2020-06-05 PDBE C12 "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C12 _pdbx_chem_comp_synonyms.name "PEPTIDE DERIVED CHROMOPHORE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #